PDB Chemical Component 0G

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0G

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP3 P 1.619 1.610
OP3 HOP3 0.950 0.967
P OP1 1.489 1.480
P OP2 1.463 1.611
P O5' 1.597 1.610
OP2 HOP2 0.950 0.967
O5' C5' 1.415 1.429
C5' C4' 1.506 1.531
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.090
C4' O4' 1.452 1.444
C4' C3' 1.544 1.545
C4' H4' 1.100 1.089
O4' C1' 1.416 1.444
C3' O3' 1.445 1.429
C3' C2' 1.526 1.545
C3' H3' 1.100 1.090
O3' HO3' 0.950 0.966
C2' O2' 1.426 1.429
C2' C1' 1.527 1.544
C2' H2' 1.100 1.091
O2' HO2' 0.950 0.967
C1' N9 1.458 1.465
C1' H1' 1.100 1.089
N9 C8 1.377 1.365
N9 C4 1.376 1.368
C8 N7 1.301 1.301
C8 H8 1.080 1.080
N7 C5 1.393 1.355
C6 O6 1.249 1.219
C6 C5 1.419 1.415
C6 N1 1.399 1.351
C5 C4 1.391 1.400
N1 C2 1.383 1.363
N1 H1 1.000 0.970
C2 N2 1.349 1.373
C2 N3 1.333 1.314
N2 H21 1.000 0.970
N2 H22 1.000 0.970
N3 C4 1.357 1.338

Bond Angles for 0G

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
P OP3 HOP3 109.5 114.0
OP3 P OP1 104.6 109.5
OP3 P OP2 110.1 109.4
OP3 P O5' 105.0 109.5
OP1 P OP2 121.8 109.4
OP1 P O5' 105.5 109.5
OP2 P O5' 108.5 109.5
P OP2 HOP2 109.5 114.0
P O5' C5' 118.5 123.0
O5' C5' C4' 111.0 109.5
O5' C5' H5' 108.9 109.5
O5' C5' H5'' 108.9 109.5
C4' C5' H5' 109.0 109.5
C4' C5' H5'' 109.0 109.4
C5' C4' O4' 107.7 110.4
C5' C4' C3' 117.4 110.4
C5' C4' H4' 103.7 110.3
H5' C5' H5'' 110.0 109.4
O4' C4' C3' 103.9 104.8
O4' C4' H4' 117.2 110.4
C4' O4' C1' 108.0 105.3
C3' C4' H4' 107.5 110.5
C4' C3' O3' 113.4 110.5
C4' C3' C2' 98.1 104.0
C4' C3' H3' 115.3 110.5
O4' C1' C2' 107.0 104.8
O4' C1' N9 108.9 110.4
O4' C1' H1' 113.1 110.3
O3' C3' C2' 112.3 110.5
O3' C3' H3' 101.9 110.5
C3' O3' HO3' 109.5 114.1
C2' C3' H3' 116.4 110.6
C3' C2' O2' 113.4 110.5
C3' C2' C1' 99.9 104.1
C3' C2' H2' 113.5 110.5
O2' C2' C1' 110.3 110.5
O2' C2' H2' 103.7 110.5
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 116.4 110.6
C2' C1' N9 113.8 110.4
C2' C1' H1' 108.0 110.4
N9 C1' H1' 106.1 110.4
C1' N9 C8 128.9 126.2
C1' N9 C4 125.0 126.3
C8 N9 C4 106.1 107.5
N9 C8 N7 113.5 109.8
N9 C8 H8 123.2 125.1
N9 C4 C5 105.6 106.1
N9 C4 N3 125.3 134.2
N7 C8 H8 123.3 125.1
C8 N7 C5 104.6 109.4
N7 C5 C6 131.3 134.2
N7 C5 C4 110.1 107.2
O6 C6 C5 129.3 120.8
O6 C6 N1 118.7 120.9
C5 C6 N1 111.9 118.3
C6 C5 C4 118.6 118.6
C6 N1 C2 125.0 120.3
C6 N1 H1 117.5 119.8
C5 C4 N3 129.0 119.7
C2 N1 H1 117.5 119.9
N1 C2 N2 116.2 119.0
N1 C2 N3 123.9 121.9
N2 C2 N3 119.8 119.0
C2 N2 H21 120.0 120.0
C2 N2 H22 120.0 120.0
C2 N3 C4 111.6 121.1
H21 N2 H22 120.0 120.0

Torsion Angles for 0G

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP3 OP2 227.5 240.1
OP1 P OP3 O5' 110.9 120.1
OP2 P OP3 O5' 243.4 240.0
OP3 P OP2 HOP2 237.0 60.0
OP3 P O5' C5' 66.3 175.0
HOP3 OP3 P OP1 360.0 300.0
HOP3 OP3 P OP2 132.5 60.0
HOP3 OP3 P O5' 249.1 180.0
OP1 P OP3 HOP3 360.0 300.0
OP3 P OP1 OP2 125.5 119.9
OP3 P OP1 O5' 249.5 240.0
OP2 P OP1 O5' 124.1 120.0
OP1 P OP2 HOP2 360.0 180.0
OP1 P O5' C5' 316.1 54.9
OP2 P OP3 HOP3 132.5 60.0
OP3 P OP2 OP1 237.1 240.0
OP3 P OP2 O5' 114.4 120.0
OP1 P OP2 O5' 237.3 240.0
OP2 P O5' C5' 184.0 295.0
O5' P OP3 HOP3 249.1 180.0
OP3 P O5' OP1 110.2 120.0
OP3 P O5' OP2 242.3 240.0
OP1 P O5' OP2 132.1 120.0
O5' P OP2 HOP2 122.7 300.0
P O5' C5' C4' 175.0 180.0
P O5' C5' H5' 295.0 300.1
P O5' C5' H5'' 55.0 60.1
HOP2 OP2 P O5' 122.7 300.0
C4' C5' O5' H5' 240.0 240.0
C4' C5' O5' H5'' 120.0 120.0
O5' C5' C4' O4' 73.9 293.6
O5' C5' C4' C3' 317.1 178.2
O5' C5' C4' H4' 198.8 55.8
H5' C5' O5' H5'' 240.0 240.0
O5' C5' C4' H5' 120.0 120.1
O5' C5' C4' H5'' 240.0 240.0
H5' C5' C4' H5'' 120.1 119.9
O4' C4' C5' C3' 116.8 115.4
O4' C4' C5' H4' 235.1 237.7
C5' C4' O4' C1' 211.5 200.6
C3' C4' C5' H4' 118.3 122.4
C5' C4' C3' O3' 280.5 261.4
C5' C4' C3' C2' 161.9 142.8
C5' C4' C3' H3' 37.5 24.1
O5' C5' H5' C4' 238.7 240.0
O5' C5' H5' H5'' 119.3 120.0
C4' C5' H5' H5'' 240.6 240.1
H5' C5' C4' O4' 313.9 173.5
H5' C5' C4' C3' 197.1 58.1
H5' C5' C4' H4' 78.8 295.7
O5' C5' H5'' C4' 121.2 120.0
O5' C5' H5'' H5' 240.6 239.9
C4' C5' H5'' H5' 119.4 120.0
H5'' C5' C4' O4' 193.9 53.6
H5'' C5' C4' C3' 77.1 298.2
H5'' C5' C4' H4' 318.7 175.8
O4' C4' C5' H5' 313.9 173.5
O4' C4' C5' H5'' 193.9 53.6
C5' C4' O4' C3' 234.7 241.2
C5' C4' O4' H4' 116.3 122.2
C3' C4' O4' H4' 241.6 241.0
O4' C4' C3' O3' 161.7 142.6
O4' C4' C3' C2' 43.0 24.0
O4' C4' C3' H3' 278.7 265.2
C4' O4' C1' C2' 353.3 40.5
C4' O4' C1' N9 116.8 159.4
C4' O4' C1' H1' 234.5 281.7
C3' C4' C5' H5' 197.1 58.1
C3' C4' C5' H5'' 77.1 298.2
C5' C4' C3' O4' 118.8 118.8
C5' C4' C3' H4' 243.7 237.7
O4' C4' C3' H4' 124.9 118.9
C3' C4' O4' C1' 336.8 319.5
O3' C3' C4' C2' 118.6 118.6
O3' C3' C4' H3' 243.0 237.4
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 124.4 118.8
C4' C3' C2' O2' 72.2 118.6
C4' C3' C2' C1' 314.8 360.0
C4' C3' C2' H2' 190.2 241.2
H4' C4' C5' H5' 78.8 295.7
H4' C4' C5' H5'' 318.7 175.8
C5' C4' H4' O4' 241.5 237.8
C5' C4' H4' C3' 125.0 122.3
O4' C4' H4' C3' 243.5 244.5
H4' C4' O4' C1' 95.2 78.4
H4' C4' C3' O3' 36.8 23.7
H4' C4' C3' C2' 278.2 265.1
H4' C4' C3' H3' 153.8 146.3
C1' O4' C4' C3' 336.8 319.5
C1' O4' C4' H4' 95.2 78.4
C3' C2' C1' O4' 33.9 336.0
O2' C2' C1' O4' 274.2 217.4
O4' C1' C2' H2' 156.5 94.7
C2' C1' O4' N9 236.6 241.1
C2' C1' O4' H1' 118.8 118.8
N9 C1' O4' H1' 242.3 237.7
O4' C1' N9 C8 342.4 336.5
O4' C1' N9 C4 163.7 156.2
O3' C3' C4' H4' 36.8 23.7
C4' C3' O3' C2' 249.9 245.4
C4' C3' O3' H3' 124.6 122.7
C2' C3' O3' H3' 234.7 237.3
O3' C3' C2' O2' 312.7 0.0
O3' C3' C2' C1' 195.3 241.3
O3' C3' C2' H2' 70.7 122.6
C2' C3' C4' H4' 278.2 265.1
C4' C3' C2' O3' 119.5 118.6
C4' C3' C2' H3' 236.5 241.3
O4' C1' C2' C3' 33.9 336.0
O3' C3' C2' H3' 116.9 122.7
C2' C3' O3' HO3' 290.1 294.6
O2' C2' C3' C1' 117.4 118.7
O2' C2' C3' H2' 242.0 237.4
C3' C2' O2' HO2' 180.0 61.4
C1' C2' C3' H2' 124.6 118.8
C3' C2' C1' N9 273.5 217.2
C3' C2' C1' H1' 155.9 94.8
H3' C3' C4' H4' 153.8 146.3
C4' C3' H3' O3' 236.7 237.3
C4' C3' H3' C2' 114.1 114.7
O3' C3' H3' C2' 237.5 237.4
H3' C3' O3' HO3' 55.4 57.3
H3' C3' C2' O2' 195.8 237.3
H3' C3' C2' C1' 78.4 118.7
H3' C3' C2' H2' 313.8 359.9
HO3' O3' C3' C2' 290.1 294.6
HO3' O3' C3' H3' 55.4 57.3
O4' C1' C2' O2' 274.2 217.4
O2' C2' C3' H3' 195.8 237.3
C3' C2' O2' C1' 248.9 245.3
C3' C2' O2' H2' 123.6 122.6
C1' C2' O2' H2' 234.7 237.3
O2' C2' C1' N9 153.8 98.5
O2' C2' C1' H1' 36.2 336.1
O4' C1' C2' N9 120.3 118.8
O4' C1' C2' H1' 237.9 241.2
C1' C2' C3' H3' 78.4 118.7
C3' C2' C1' O2' 119.7 118.7
C3' C2' C1' H2' 237.4 241.3
O2' C2' C1' H2' 117.7 122.6
C1' C2' O2' HO2' 291.1 176.1
N9 C1' C2' H1' 117.6 122.4
C2' C1' N9 C8 101.7 91.8
C2' C1' N9 C4 283.1 271.6
H2' C2' C3' H3' 313.8 359.9
C3' C2' H2' O2' 236.5 237.4
C3' C2' H2' C1' 115.2 114.7
O2' C2' H2' C1' 238.7 237.3
H2' C2' O2' HO2' 56.4 298.8
H2' C2' C1' N9 36.1 335.9
H2' C2' C1' H1' 278.5 213.5
HO2' O2' C2' C1' 291.1 176.1
HO2' O2' C2' H2' 56.4 298.8
O4' C1' N9 C2' 240.7 244.6
O4' C1' N9 H1' 122.0 122.3
N9 C1' C2' H2' 36.1 335.9
C2' C1' N9 H1' 241.3 237.6
C8 N9 C1' C4 178.6 180.3
C1' N9 C8 N7 179.8 180.0
C1' N9 C8 H8 359.8 0.0
C1' N9 C4 C5 179.6 179.8
C1' N9 C4 N3 0.1 360.0
O4' C1' H1' C2' 118.3 115.3
O4' C1' H1' N9 240.7 237.7
H1' C1' C2' H2' 278.5 213.5
C2' C1' H1' N9 122.4 122.4
H1' C1' N9 C8 220.4 214.2
H1' C1' N9 C4 41.7 33.9
C8 N9 C1' H1' 220.4 214.2
C1' N9 C8 C4 181.2 179.8
C8 N9 C4 C5 0.7 359.6
C8 N9 C4 N3 181.2 179.7
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 1.4 0.1
C4 N9 C1' H1' 41.7 33.9
C1' N9 C4 C8 178.9 180.2
C4 N9 C8 N7 358.7 0.2
C4 N9 C8 H8 178.6 180.2
N7 C5 C4 N9 0.1 0.4
C6 C5 C4 N9 179.0 180.2
C5 C4 N9 N3 179.5 179.9
C2 N3 C4 N9 180.3 179.1
N7 C8 N9 C4 358.7 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.4 180.0
C8 N7 C5 C4 359.1 359.7
H8 C8 N9 C4 178.6 180.2
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 181.4 180.0
N9 C4 C5 N7 0.1 0.4
C5 N7 C8 H8 181.4 180.0
O6 C6 C5 N7 358.3 360.0
N7 C5 C6 N1 179.5 179.9
C6 C5 N7 C4 181.3 180.3
N7 C5 C4 N3 179.6 180.3
N7 C5 C6 O6 358.3 360.0
C5 C6 O6 N1 181.2 180.0
O6 C6 C5 C4 179.7 180.3
O6 C6 N1 C2 181.1 180.0
O6 C6 N1 H1 1.1 360.0
N9 C4 C5 C6 179.0 180.2
N7 C5 C6 C4 178.6 179.7
O6 C6 C5 N1 178.8 180.0
C5 C6 N1 C2 0.1 0.0
C5 C6 N1 H1 180.1 180.0
C6 C5 C4 N3 358.5 0.0
O6 C6 N1 C5 181.0 180.0
N1 C6 C5 C4 0.9 0.3
C2 N1 C6 H1 180.0 180.0
C6 N1 C2 N2 179.1 180.0
C6 N1 C2 N3 359.3 359.3
N9 C4 C5 N3 180.5 180.1
N7 C5 C4 C6 181.1 180.3
C4 C5 C6 N1 0.9 0.3
C2 N3 C4 C5 0.9 359.3
C6 N1 C2 H1 180.0 180.0
N2 C2 N1 N3 179.9 180.7
N1 C2 N2 H21 180.1 0.0
N1 C2 N2 H22 0.1 180.0
N1 C2 N3 C4 0.3 1.0
C6 N1 H1 C2 180.0 180.0
H1 N1 C2 N2 359.1 0.0
H1 N1 C2 N3 179.3 179.4
N2 C2 N1 H1 359.1 0.0
N1 C2 N2 N3 180.1 179.4
N2 C2 N3 C4 180.4 180.4
H21 N2 C2 H22 180.0 180.0
N9 C4 N3 C2 180.3 179.1
C5 C4 N3 C2 0.9 359.3
N3 C2 N1 H1 179.3 179.4
N1 C2 N3 N2 179.9 180.7
N3 C2 N2 H21 360.0 180.7
N3 C2 N2 H22 180.0 0.7
H21 N2 C2 N3 360.0 180.7
C2 N2 H21 H22 180.0 180.0
H22 N2 C2 N3 180.0 0.7
C2 N2 H22 H21 180.0 180.0
N9 C4 N3 C5 179.4 179.8