Atom Nomenclature for 0FY

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0FY

Atom Name (V3) Atom Name (V2)
C34 C34
C14 C14
C28 C28
C25 C25
C35 C35
C37 C37
C8 C8
C10 C10
C33 C33
C38 C38
C9 C9
C15 C15
C13 C13
C4 C4
C6 C6
C3 C3
C1 C1
C30 C30
C21 C21
C22 C22
C20 C20
C24 C24
C23 C23
C11 C11
C40 C40
C18 C18
C29 C29
N27 N27
N16 N16
N2 N2
N26 N26
N5 N5
N36 N36
N7 N7
N32 N32
N12 N12
N19 N19
O31 O31
F39 F39
S17 S17
H34 H34
H14 H14
H28 H28
H25 H25
H35 H35
H37 H37
H8 H8
H6 H6
H211 H211
H212 H212
H222 H222
H221 H221
H201 H201
H202 H202
H242 H242
H241 H241
H23 H23
H111 H111
H113 H113
H112 H112
H402 H402
H403 H403
H401 H401
H181 H181
H182 H182
H292 H292
H291 H291
H32 H32
H12 H12
H36 H36
H7 H7
H19 H19