Atom Nomenclature for 0FQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0FQ

Atom Name (V3) Atom Name (V2)
CB CB
N1A N1A
O1A O1A
P1A P1A
C1B C1B
O1B O1B
C1D C1D
S1P S1P
C2A C2A
O2A O2A
P2A P2A
C2B C2B
C2D C2D
O2D O2D
C2P C2P
N3A N3A
O3A O3A
C3B C3B
C3D C3D
O3D O3D
P3D P3D
C3P C3P
C4A C4A
O4A O4A
C4B C4B
C4D C4D
O4D O4D
N4P N4P
C5A C5A
O5A O5A
C5B C5B
C5D C5D
O5D O5D
C5P C5P
O5P O5P
C6A C6A
N6A N6A
O6A O6A
C6B C6B
C6P C6P
N7A N7A
O7A O7A
C7B C7B
C7P C7P
C8A C8A
O8A O8A
N8P N8P
N9A N9A
O9A O9A
C9P C9P
O9P O9P
CAP CAP
OAP OAP
CBP CBP
CCP CCP
CDP CDP
CEP CEP
HB HB
HBA HBA
H1D H1D
H2A H2A
HO2A HO2A
H2D H2D
HO2D HO2D
H2P H2P
H2PA H2PA
H3B H3B
H3D H3D
H3P H3P
H3PA H3PA
H4B H4B
H4D H4D
HN4P HN4P
HO5A HO5A
H5B H5B
H5D H5D
H5DA H5DA
HN6A HN6A
HN6B HN6B
H6B H6B
H6P H6P
H6PA H6PA
H7B H7B
H7P H7P
H7PA H7PA
H8A H8A
HO8A HO8A
HN8P HN8P
HO9A HO9A
HAP HAP
HOAP HOAP
HCP HCP
HCPA HCPA
HDP HDP
HDPA HDPA
HDPB HDPB
HEP HEP
HEPA HEPA
HEPB HEPB