Atom Nomenclature for 0FP

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0FP

Atom Name (V3) Atom Name (V2)
CA CA
C C
O O
CB CB
CG CG
CD CD
CE CE
NZ NZ
N N
CA1 CA1
CB1 CB1
CG1 CG1
CG2 CG2
CG3 CG3
C1 C1
O1 O1
N1 N1
CA2 CA2
CB2 CB2
CG11 CG11
CG21 CG21
CG31 CG31
C2 C2
O2 O2
N2 N2
CA3 CA3
CB3 CB3
CG4 CG4
OD1 OD1
ND2 ND2
CE1 CE1
CE2 CE2
C3 C3
O3 O3
N3 N3
CA4 CA4
C4 C4
O4 O4
CB4 CB4
C11 C11
O11 O11
N21 N21
C31 C31
C311 C311
C32 C32
C41 C41
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
HA2 HA2
HA HA
HB1 HB1
HB2 HB2
HG1 HG1
HG2 HG2
HD1 HD1
HD2 HD2
HE1 HE1
HE2 HE2
HZ1 HZ1
HZ2 HZ2
H H
HA1 HA1
HG11 HG11
HG12 HG12
HG13 HG13
HG21 HG21
HG22 HG22
HG23 HG23
HG31 HG31
HG32 HG32
HG33 HG33
H1 H1
HA3 HA3
HG14 HG14
HG15 HG15
HG16 HG16
HG24 HG24
HG25 HG25
HG26 HG26
HG34 HG34
HG35 HG35
HG36 HG36
H2 H2
HA11 HA11
HB21 HB21
HB3 HB3
HE11 HE11
HE12 HE12
HE13 HE13
HE21 HE21
HE22 HE22
HE23 HE23
H3 H3
HA4 HA4
HB11 HB11
HB22 HB22
HB31 HB31
HN2 HN2
HC3 HC3
H311 H311
H312 H312
H321 H321
H322 H322
H323 H323
HC5 HC5
HC6 HC6
HC7 HC7
HC8 HC8
HC9 HC9
H62 H62
H63 H63