Atom Nomenclature for 0FG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0FG

Atom Name (V3) Atom Name (V2)
N N
CA CA
CB CB
CG CG
CD1 CD1
CD2 CD2
C C
O O
N1 N1
CA1 CA1
C1 C1
O1 O1
CB1 CB1
CG1 CG1
CD11 CD11
CD21 CD21
CE1 CE1
CE2 CE2
CZ CZ
C11 C11
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
N2 N2
F F
H H
H2 H2
HA HA
HB2 HB2
HB3 HB3
HG HG
HD11 HD11
HD12 HD12
HD13 HD13
HD21 HD21
HD22 HD22
HD23 HD23
H1 H1
HA1 HA1
HB21 HB21
HB31 HB31
HD1 HD1
HD2 HD2
HE1 HE1
HE2 HE2
HZ HZ
H21 H21
H3 H3
H5 H5
H6 H6
H11 H11
H2A H2A
HN2 HN2