Atom Nomenclature for 0F4

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0F4

Atom Name (V3) Atom Name (V2)
F1 F1
C2 C2
F3 F3
F4 F4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
N10 N10
C11 C11
O12 O12
N13 N13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
N19 N19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
N25 N25
C26 C26
O27 O27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
N34 N34
C36 C36
C37 C37
C38 C38
H6 H6
H7 H7
H8 H8
HN10 HN10
HN13 HN13
H15 H15
H16 H16
H17 H17
HN19 HN19
H21 H21
H22 H22
HN25 HN25
H29 H29
H31 H31
H32 H32
H33 H33
H36 H36
H37 H37
H38 H38
HN34 HN34