Atom Nomenclature for 0EU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0EU

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
S7 S7
C8 C8
N9 N9
C10 C10
O10 O10
N11 N11
C14 C14
C15 C15
N15 N15
O15 O15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
N20 N20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
O26 O26
O27 O27
C28 C28
C29 C29
C30 C30
C31 C31
C35 C35
C36 C36
H2 H2
H3 H3
H4 H4
H5 H5
HN9 HN9
HN11 HN11
H16 H16
H16A H16A
H17 H17
H17A H17A
H18 H18
H18A H18A
H19 H19
H19A H19A
H20 H20
H21 H21
H21A H21A
H22 H22
H22A H22A
H23 H23
H23A H23A
H24 H24
H24A H24A
H28 H28
H28A H28A
H30 H30
H30A H30A
H30B H30B
H31 H31
H31A H31A
H31B H31B
H35 H35
H35A H35A
H36 H36
H36A H36A
H36B H36B