PDB Chemical Component 0DN

Ideal Model

Chemical Description

Name 5'-deoxy-5'-fluorothymidine
Formula C10 H13 F N2 O4
Formal charge 0
Molecular weight 244.220 g/mol
Component type NON-POLYMER

Chemical features

Atom count 30
Chiral atom count 3
Chiral atoms C4 C2 C1
Bond count 31
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-deoxy-5'-fluorothymidine
Systematic name (OpenEye OEToolkits) 1-[(2R,4S,5S)-5-(fluoranylmethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](O)[C@@H](CF)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](O)[CH](CF)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CF)O
InChI descriptor InChI=1S/C10H13FN2O4/c1-5-4-13(10(16)12-9(5)15)8-2-6(14)7(3-11)17-8/h4,6-8,14H,2-3H2,1H3,(H,12,15,16)/t6-,7+,8+/m0/s1
InChIKey descriptor MYWVPKQWFIVGJZ-XLPZGREQSA-N

Status Information

Last modified 2012-01-27
Created 2011-12-14
Release status REL
Model PDB code 3UXM
Processing site RCSB