PDB Chemical Component 0DF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0DF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C7 |
N1 |
1.473 |
1.465 |
| O1 |
C3 |
1.295 |
1.217 |
| N1 |
C3 |
1.316 |
1.346 |
| N1 |
C2 |
1.341 |
1.392 |
| C3 |
N2 |
1.329 |
1.345 |
| C2 |
C6 |
1.402 |
1.385 |
| C2 |
C1 |
1.400 |
1.399 |
| N2 |
C1 |
1.324 |
1.389 |
| C6 |
C5 |
1.388 |
1.399 |
| C1 |
N3 |
1.351 |
1.325 |
| C13 |
C12 |
1.393 |
1.380 |
| C13 |
C8 |
1.406 |
1.394 |
| C5 |
C8 |
1.485 |
1.483 |
| C5 |
C4 |
1.385 |
1.393 |
| N3 |
C4 |
1.325 |
1.317 |
| C12 |
C11 |
1.399 |
1.383 |
| C8 |
C9 |
1.404 |
1.393 |
| C11 |
C10 |
1.389 |
1.384 |
| C9 |
C10 |
1.402 |
1.381 |
| C7 |
H1 |
1.100 |
1.090 |
| C7 |
H2 |
1.100 |
1.090 |
| C7 |
H3 |
1.100 |
1.090 |
| C6 |
H4 |
1.080 |
1.080 |
| C4 |
H5 |
1.080 |
1.081 |
| N2 |
H6 |
1.000 |
0.970 |
| C13 |
H7 |
1.080 |
1.080 |
| C12 |
H8 |
1.079 |
1.080 |
| C11 |
H9 |
1.080 |
1.079 |
| C10 |
H10 |
1.080 |
1.079 |
| C9 |
H11 |
1.080 |
1.080 |
Bond Angles for 0DF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C7 |
N1 |
C2 |
129.0 |
125.9 |
| O1 |
C3 |
N2 |
122.6 |
125.1 |
| N1 |
C3 |
N2 |
114.5 |
109.7 |
| N1 |
C2 |
C6 |
132.4 |
133.6 |
| N1 |
C2 |
C1 |
106.7 |
106.9 |
| C3 |
N2 |
C1 |
104.1 |
108.6 |
| C3 |
N2 |
H6 |
128.0 |
125.7 |
| C6 |
C2 |
C1 |
120.6 |
119.5 |
| C2 |
C6 |
C5 |
116.0 |
118.2 |
| C2 |
C6 |
H4 |
122.0 |
120.9 |
| C2 |
C1 |
N3 |
120.9 |
120.5 |
| C6 |
C5 |
C8 |
122.9 |
120.4 |
| C6 |
C5 |
C4 |
120.8 |
119.0 |
| C5 |
C6 |
H4 |
122.0 |
120.9 |
| C13 |
C12 |
C11 |
119.2 |
120.2 |
| C12 |
C13 |
H7 |
120.2 |
120.1 |
| C13 |
C12 |
H8 |
120.4 |
119.9 |
| C13 |
C8 |
C9 |
120.8 |
119.7 |
| C4 |
C5 |
C8 |
116.3 |
120.5 |
| C5 |
C8 |
C9 |
120.7 |
120.1 |
| C5 |
C4 |
H5 |
118.7 |
119.5 |
| N3 |
C4 |
H5 |
118.7 |
119.4 |
| C12 |
C11 |
C10 |
121.6 |
120.2 |
| C11 |
C12 |
H8 |
120.4 |
119.9 |
| C12 |
C11 |
H9 |
119.2 |
119.9 |
| C8 |
C9 |
C10 |
119.2 |
119.9 |
| C8 |
C9 |
H11 |
120.5 |
120.1 |
| C10 |
C11 |
H9 |
119.2 |
119.9 |
| C11 |
C10 |
H10 |
120.2 |
120.0 |
| C9 |
C10 |
H10 |
120.2 |
119.9 |
| H1 |
C7 |
H2 |
109.4 |
109.5 |
| H1 |
C7 |
H3 |
109.5 |
109.5 |
| H2 |
C7 |
H3 |
109.4 |
109.4 |
Torsion Angles for 0DF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C7 |
N1 |
C3 |
N2 |
180.3 |
180.3 |
| C7 |
N1 |
C2 |
C6 |
3.7 |
359.9 |
| C7 |
N1 |
C2 |
C1 |
177.4 |
180.0 |
| N1 |
C3 |
O1 |
N2 |
178.7 |
180.3 |
| O1 |
C3 |
N2 |
C1 |
180.9 |
179.8 |
| O1 |
C3 |
N2 |
H6 |
0.9 |
359.9 |
| O1 |
C3 |
N1 |
N2 |
181.2 |
179.8 |
| N1 |
C3 |
N2 |
C1 |
2.1 |
359.6 |
| N1 |
C3 |
N2 |
H6 |
182.1 |
179.7 |
| C2 |
N1 |
C3 |
N2 |
0.4 |
0.2 |
| C6 |
C2 |
N1 |
C1 |
186.3 |
179.9 |
| N1 |
C2 |
C6 |
C5 |
177.9 |
180.0 |
| N1 |
C2 |
C6 |
H4 |
357.9 |
360.0 |
| N1 |
C2 |
C1 |
N3 |
182.0 |
180.0 |
| N1 |
C2 |
C6 |
C1 |
173.0 |
180.1 |
| C6 |
C2 |
C1 |
N3 |
356.6 |
0.1 |
| C2 |
C6 |
C5 |
C8 |
180.6 |
180.0 |
| C2 |
C6 |
C5 |
C4 |
356.8 |
0.0 |
| C5 |
C6 |
C2 |
H4 |
180.0 |
180.0 |
| N1 |
C2 |
C1 |
C6 |
185.4 |
180.0 |
| C3 |
N2 |
C1 |
C2 |
356.3 |
0.4 |
| C1 |
C2 |
C6 |
C5 |
4.9 |
360.0 |
| C1 |
C2 |
C6 |
H4 |
184.9 |
179.9 |
| C3 |
N2 |
C1 |
H6 |
180.0 |
180.1 |
| C5 |
C6 |
C2 |
C1 |
4.9 |
360.0 |
| C2 |
C6 |
C5 |
H4 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
C8 |
176.2 |
180.1 |
| C6 |
C5 |
C8 |
C9 |
220.1 |
180.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C3 |
N2 |
C1 |
N3 |
178.7 |
180.1 |
| C1 |
N3 |
C4 |
H5 |
181.8 |
180.0 |
| C12 |
C13 |
C8 |
C9 |
3.4 |
0.3 |
| C13 |
C12 |
C11 |
C10 |
0.1 |
0.0 |
| C11 |
C12 |
C13 |
H8 |
180.0 |
180.0 |
| C13 |
C12 |
C11 |
H9 |
180.1 |
179.9 |
| C5 |
C8 |
C13 |
C9 |
175.1 |
179.7 |
| C13 |
C8 |
C9 |
C10 |
357.3 |
359.5 |
| C13 |
C8 |
C9 |
H11 |
177.3 |
179.7 |
| C6 |
C5 |
C8 |
C4 |
176.3 |
180.1 |
| C8 |
C5 |
C6 |
H4 |
0.5 |
360.0 |
| C13 |
C8 |
C5 |
C9 |
184.9 |
180.3 |
| C8 |
C5 |
C4 |
H5 |
356.4 |
0.1 |
| C5 |
C8 |
C9 |
C10 |
182.3 |
179.8 |
| C5 |
C8 |
C9 |
H11 |
2.3 |
0.0 |
| C6 |
C5 |
C4 |
C8 |
183.6 |
179.9 |
| C4 |
C5 |
C6 |
H4 |
176.7 |
180.1 |
| C4 |
C5 |
C8 |
C9 |
43.8 |
359.9 |
| N3 |
C4 |
C5 |
H5 |
180.0 |
179.9 |
| C2 |
C1 |
N3 |
C4 |
360.0 |
359.9 |
| N3 |
C4 |
C5 |
C8 |
176.4 |
180.0 |
| C5 |
C4 |
N3 |
H5 |
180.0 |
180.1 |
| C11 |
C12 |
C13 |
H7 |
178.0 |
180.0 |
| C13 |
C12 |
C11 |
H8 |
180.0 |
180.0 |
| C10 |
C11 |
C12 |
H9 |
180.0 |
180.1 |
| C12 |
C11 |
C10 |
H10 |
180.6 |
179.9 |
| C8 |
C9 |
C10 |
H10 |
180.7 |
180.3 |
| C10 |
C11 |
C12 |
H8 |
180.1 |
180.1 |
| C12 |
C11 |
C10 |
H9 |
180.0 |
179.9 |
| C8 |
C9 |
C10 |
C11 |
0.8 |
0.5 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
179.8 |
| C8 |
C9 |
C10 |
H11 |
180.0 |
180.2 |
| C9 |
C10 |
C11 |
H9 |
180.6 |
179.8 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.2 |
| H1 |
C7 |
N1 |
C2 |
359.9 |
180.1 |
| H2 |
C7 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C7 |
N1 |
C2 |
119.9 |
300.1 |
| H1 |
C7 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C7 |
N1 |
C2 |
239.9 |
60.0 |
| H1 |
C7 |
H3 |
H2 |
119.9 |
120.0 |
| H4 |
C6 |
C2 |
C1 |
184.9 |
179.9 |
| C2 |
C6 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C6 |
C5 |
C8 |
0.5 |
360.0 |
| H4 |
C6 |
C5 |
C4 |
176.7 |
180.1 |
| H5 |
C4 |
C5 |
C8 |
356.4 |
0.1 |
| C3 |
N2 |
H6 |
C1 |
180.0 |
179.9 |
| H7 |
C13 |
C12 |
C11 |
178.0 |
180.0 |
| H7 |
C13 |
C12 |
H8 |
358.0 |
360.0 |
| H7 |
C13 |
C8 |
C9 |
183.4 |
180.2 |
| C13 |
C12 |
H8 |
C11 |
180.0 |
180.0 |
| H8 |
C12 |
C13 |
H7 |
358.0 |
360.0 |
| H8 |
C12 |
C11 |
C10 |
180.1 |
180.1 |
| H8 |
C12 |
C11 |
H9 |
0.1 |
359.9 |
| C12 |
C11 |
H9 |
C10 |
180.0 |
180.1 |
| H9 |
C11 |
C12 |
H8 |
0.1 |
359.9 |
| H9 |
C11 |
C10 |
H10 |
0.6 |
0.1 |
| H10 |
C10 |
C11 |
H9 |
0.6 |
0.1 |
| C8 |
C9 |
H11 |
C10 |
180.0 |
179.8 |
| H11 |
C9 |
C10 |
H10 |
0.7 |
0.1 |