PDB Chemical Component 0DA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0DA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C8A N9A 1.364 1.363
C8A N7A 1.307 1.301
N9A C4A 1.373 1.372
N9A C1' 1.469 1.465
C4A C5A 1.367 1.405
C4A N3A 1.360 1.329
C5A N7A 1.401 1.355
C5A C6A 1.412 1.405
N3A C2A 1.333 1.316
C2A N1A 1.333 1.321
N1A C6A 1.343 1.329
C6A N6A 1.321 1.384
C4' O4' 1.404 1.445
C4' C3' 1.532 1.545
O4' C1' 1.403 1.444
C3' C2' 1.521 1.545
C2' C1' 1.527 1.546
C3' O3' 1.430 1.429
C4' C5' 1.540 1.531
C5' O5' 1.430 1.429
O5' P 1.719 1.610
P OP2 1.721 1.610
P OP3 1.720 1.610
P OP1 1.721 1.481
C8A H8A 1.080 1.080
C2A H2A 1.080 1.080
N6A HN61 1.000 0.971
N6A HN62 1.000 0.970
C4' H4' 1.100 1.090
C3' H3' 1.100 1.089
C2' H2' 1.100 1.090
C2' H2'' 1.100 1.090
C1' H1' 1.100 1.090
O3' HO3' 0.950 0.967
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.090
OP2 H2P 0.950 0.967
OP3 HOP3 0.949 0.966

Bond Angles for 0DA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N9A C8A N7A 114.2 110.0
C8A N9A C4A 105.9 107.4
C8A N9A C1' 126.8 126.3
N9A C8A H8A 122.9 125.0
C8A N7A C5A 103.0 109.4
N7A C8A H8A 122.9 125.0
C4A N9A C1' 126.1 126.3
N9A C4A C5A 105.8 106.0
N9A C4A N3A 127.1 134.9
N9A C1' O4' 107.0 110.4
N9A C1' C2' 116.4 110.3
N9A C1' H1' 106.3 110.3
C5A C4A N3A 127.2 119.1
C4A C5A N7A 111.0 107.2
C4A C5A C6A 114.5 118.1
C4A N3A C2A 111.6 120.6
N7A C5A C6A 134.5 134.7
C5A C6A N1A 121.0 118.5
C5A C6A N6A 122.6 120.8
N3A C2A N1A 128.4 122.5
N3A C2A H2A 115.8 118.7
C2A N1A C6A 117.3 121.1
N1A C2A H2A 115.8 118.8
N1A C6A N6A 116.4 120.7
C6A N6A HN61 109.5 120.0
C6A N6A HN62 109.5 120.1
O4' C4' C3' 109.3 104.8
C4' O4' C1' 109.6 105.2
O4' C4' C5' 111.9 110.4
O4' C4' H4' 109.6 110.4
C4' C3' C2' 102.5 104.1
C4' C3' O3' 86.0 110.5
C3' C4' C5' 114.1 110.4
C3' C4' H4' 107.2 110.4
C4' C3' H3' 122.8 110.5
O4' C1' C2' 108.8 104.8
O4' C1' H1' 114.2 110.4
C3' C2' C1' 103.3 104.0
C2' C3' O3' 96.2 110.5
C2' C3' H3' 115.4 110.5
C3' C2' H2' 111.6 110.5
C3' C2' H2'' 111.6 110.5
C1' C2' H2' 111.6 110.5
C1' C2' H2'' 111.6 110.5
C2' C1' H1' 104.4 110.4
O3' C3' H3' 127.5 110.6
C3' O3' HO3' 109.5 114.0
C4' C5' O5' 104.8 109.5
C5' C4' H4' 104.4 110.4
C4' C5' H5' 111.1 109.4
C4' C5' H5'' 111.1 109.5
C5' O5' P 120.0 123.0
O5' C5' H5' 111.0 109.4
O5' C5' H5'' 111.0 109.5
O5' P OP2 115.1 109.5
O5' P OP3 129.6 109.5
O5' P OP1 107.1 109.4
OP2 P OP3 75.5 109.5
OP2 P OP1 111.6 109.5
P OP2 H2P 109.5 114.0
OP3 P OP1 114.0 109.4
P OP3 HOP3 109.5 114.1
HN61 N6A HN62 109.4 120.0
H2' C2' H2'' 107.3 110.6
H5' C5' H5'' 107.8 109.5

Torsion Angles for 0DA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N9A C8A N7A C5A 2.6 360.0
N7A C8A N9A H8A 180.0 180.3
C4A N9A C8A C1' 191.9 180.1
C8A N9A C4A C5A 3.0 360.0
C8A N9A C4A N3A 183.3 180.0
C8A N9A C1' O4' 321.3 336.5
C8A N9A C1' C2' 83.2 91.9
C8A N9A C1' H1' 198.9 214.2
N7A C8A N9A C4A 356.3 0.0
N7A C8A N9A C1' 164.5 180.0
N9A C8A N7A H8A 180.0 179.7
C4A C5A N7A C8A 359.4 0.0
C8A N7A C5A C6A 178.0 179.9
C4A N9A C8A N7A 356.3 0.0
C8A N9A C4A C1' 168.3 179.9
C4A N9A C8A H8A 176.3 179.7
C4A N9A C1' O4' 127.1 156.5
C4A N9A C1' C2' 249.0 271.8
C4A N9A C1' H1' 4.7 34.2
C5A C4A N9A N3A 179.7 180.0
N9A C4A C5A N7A 358.4 360.0
N9A C4A C5A C6A 179.6 180.1
N9A C4A N3A C2A 178.8 179.9
C1' N9A C8A N7A 164.5 180.0
C8A N9A C1' C4A 194.1 180.1
C1' N9A C8A H8A 344.5 359.7
C1' N9A C4A C5A 194.7 180.1
C1' N9A C4A N3A 15.1 0.1
C4' O4' C1' N9A 116.8 159.3
O4' C1' N9A C2' 238.1 244.6
O4' C1' N9A H1' 122.4 122.3
C3' C2' C1' N9A 261.3 217.2
N9A C1' C2' H2' 141.3 98.6
N9A C1' C2' H2'' 21.3 335.8
C2' C1' N9A H1' 244.3 237.7
C8A N7A C5A C4A 359.4 0.0
C5A C4A N9A C1' 194.7 180.1
N9A C4A C5A N3A 180.3 180.0
C5A C4A N3A C2A 359.2 360.0
N7A C5A C4A C6A 178.9 179.9
C4A C5A C6A N1A 1.8 359.9
C4A C5A C6A N6A 180.3 180.0
N3A C4A N9A C1' 15.1 0.1
N9A C4A N3A C5A 179.6 180.0
N3A C4A C5A N7A 178.1 180.0
N3A C4A C5A C6A 359.2 0.0
C4A N3A C2A N1A 1.7 0.1
C4A N3A C2A H2A 181.7 180.0
C5A N7A C8A H8A 182.6 180.3
N7A C5A C4A N3A 178.1 180.0
C4A C5A N7A C6A 181.4 180.1
N7A C5A C6A N1A 183.2 180.0
N7A C5A C6A N6A 1.8 0.1
C6A C5A C4A N3A 359.2 0.0
C4A C5A C6A N7A 178.5 179.9
C2A N1A C6A C5A 358.9 0.1
N1A C6A C5A N6A 181.4 179.9
C5A C6A N6A HN61 181.4 359.9
C5A C6A N6A HN62 301.4 180.0
N3A C2A N1A C6A 359.2 359.9
N1A C2A N3A H2A 180.0 180.1
C5A C6A N1A C2A 358.9 0.1
N3A C2A N1A H2A 180.0 179.9
C2A N1A C6A N6A 180.2 180.0
C5A C6A N1A N6A 178.6 180.1
C6A N1A C2A H2A 179.3 180.0
N1A C6A N6A HN61 0.0 180.0
N1A C6A N6A HN62 120.0 0.0
C5A C6A N6A N1A 181.4 179.9
HN61 N6A C6A HN62 240.0 180.0
N9A C1' O4' C4' 116.8 159.3
O4' C4' C3' C2' 20.6 24.0
O4' C4' C3' O3' 116.1 142.6
C3' C4' O4' C5' 127.5 118.8
C3' C4' O4' H4' 242.8 241.1
O4' C4' C3' H3' 249.0 265.3
C4' O4' C1' C2' 350.3 40.5
C4' O4' C1' H1' 234.1 281.6
O4' C4' C5' O5' 228.9 293.6
C5' C4' O4' H4' 115.3 122.3
O4' C4' C5' H5' 348.9 53.6
O4' C4' C5' H5'' 108.9 173.6
C3' C4' O4' C1' 352.9 319.5
O4' C4' C3' C5' 233.8 241.2
O4' C4' C3' H4' 118.8 118.9
C4' C3' C2' C1' 335.3 0.0
C2' C3' C4' O3' 264.5 241.4
C2' C3' C4' H3' 131.6 118.6
C4' C3' C2' H2' 95.2 118.6
C4' C3' C2' H2'' 215.3 241.4
O3' C3' C4' H3' 227.1 237.3
C4' C3' O3' HO3' 180.0 180.0
C3' C4' C5' O5' 104.0 178.2
C5' C4' C3' H4' 245.0 237.7
C3' C4' C5' H5' 224.0 298.2
C3' C4' C5' H5'' 344.0 58.2
N9A C1' O4' C2' 126.5 118.8
N9A C1' O4' H1' 242.7 237.7
C1' O4' C4' C3' 352.9 319.5
C1' O4' C4' C5' 225.4 200.6
C1' O4' C4' H4' 110.1 78.4
C3' C2' C1' O4' 22.3 336.0
O4' C1' C2' H2' 262.3 217.4
O4' C1' C2' H2'' 142.3 94.6
C2' C1' O4' H1' 116.2 118.9
N9A C1' C2' C3' 261.3 217.2
C4' C3' C2' O3' 87.3 118.6
C2' C3' C4' C5' 146.8 142.8
C2' C3' C4' H4' 261.8 265.1
C4' C3' C2' H3' 224.1 241.4
O4' C1' C2' C3' 22.3 336.0
C1' C2' C3' H2' 240.0 241.4
C1' C2' C3' H2'' 120.0 118.6
C3' C2' C1' H1' 144.6 94.9
O3' C3' C2' H3' 136.8 122.7
C2' C3' O3' HO3' 282.1 294.6
H2' C2' C3' H2'' 240.0 237.2
N9A C1' C2' O4' 239.1 241.2
N9A C1' C2' H1' 116.8 122.3
O4' C1' C2' H1' 237.7 241.1
C1' C2' C3' O3' 248.0 241.4
C1' C2' C3' H3' 111.2 118.7
C3' C2' C1' H2' 120.0 118.6
C3' C2' C1' H2'' 240.0 241.4
H2' C2' C1' H2'' 120.0 122.8
C4' C3' O3' C2' 257.9 245.4
O3' C3' C4' C5' 242.3 261.5
O3' C3' C4' H4' 357.4 23.8
C4' C3' O3' H3' 129.1 122.7
O3' C3' C2' C1' 248.0 241.4
C2' C3' O3' H3' 231.2 237.3
O3' C3' C2' H2' 7.9 359.9
O3' C3' C2' H2'' 127.9 122.7
O4' C4' C5' C3' 124.8 115.4
C5' C4' O4' C1' 225.4 200.6
O4' C4' C5' H4' 241.5 237.7
C5' C4' C3' C2' 146.8 142.8
C5' C4' C3' O3' 242.3 261.5
C3' C4' C5' H4' 116.7 122.3
C5' C4' C3' H3' 15.2 24.2
C4' C5' O5' P 181.7 180.0
O5' C5' C4' H5' 240.0 240.0
O5' C5' C4' H5'' 120.0 120.1
H5' C5' C4' H5'' 240.0 240.0
O5' C5' C4' H4' 347.4 55.9
C4' C5' O5' H5' 120.0 120.0
C4' C5' O5' H5'' 240.0 240.0
C5' O5' P OP2 8.2 64.9
C5' O5' P OP3 99.8 185.0
C5' O5' P OP1 243.6 304.9
H5' C5' O5' H5'' 120.0 120.0
P O5' C5' H5' 61.7 60.1
P O5' C5' H5'' 301.7 300.1
OP2 P O5' OP3 268.4 240.0
OP2 P O5' OP1 124.6 120.0
O5' P OP2 H2P 237.8 60.0
OP3 P O5' OP1 216.2 240.1
O5' P OP3 HOP3 141.8 180.0
O5' P OP2 OP3 127.3 120.0
O5' P OP2 OP1 237.7 240.0
OP3 P OP2 OP1 110.5 120.0
OP2 P OP3 HOP3 252.5 300.0
O5' P OP3 OP2 249.3 240.0
O5' P OP3 OP1 141.8 119.9
OP2 P OP3 OP1 252.5 240.0
OP3 P OP2 H2P 110.5 299.9
O5' P OP1 OP2 126.7 120.0
O5' P OP1 OP3 209.9 240.0
OP2 P OP1 OP3 83.2 120.0
OP1 P OP2 H2P 0.0 179.9
OP1 P OP3 HOP3 360.0 60.0
N9A C8A H8A N7A 180.0 180.3
H8A C8A N9A C4A 176.3 179.7
H8A C8A N9A C1' 344.5 359.7
H8A C8A N7A C5A 182.6 180.3
N3A C2A H2A N1A 180.0 180.1
H2A C2A N1A C6A 179.3 180.0
C6A N6A HN61 HN62 120.0 180.0
C6A N6A HN62 HN61 240.0 180.0
O4' C4' H4' C3' 241.4 244.6
H4' C4' O4' C1' 110.1 78.4
O4' C4' H4' C5' 120.0 122.3
H4' C4' C3' C2' 261.8 265.1
H4' C4' C3' O3' 357.4 23.8
C3' C4' H4' C5' 238.6 237.7
H4' C4' C3' H3' 130.2 146.5
H4' C4' C5' O5' 347.4 55.9
H4' C4' C5' H5' 107.4 175.8
H4' C4' C5' H5'' 227.4 295.8
C4' C3' H3' C2' 126.1 114.6
C4' C3' H3' O3' 247.1 237.3
H3' C3' C4' C5' 15.2 24.2
H3' C3' C4' H4' 130.2 146.5
H3' C3' C2' C1' 111.2 118.7
C2' C3' H3' O3' 121.0 122.7
H3' C3' C2' H2' 231.1 237.2
H3' C3' C2' H2'' 351.1 0.0
H3' C3' O3' HO3' 50.9 57.3
C3' C2' H2' C1' 245.0 245.4
H2' C2' C3' O3' 7.9 359.9
H2' C2' C3' H3' 231.1 237.2
C3' C2' H2' H2'' 122.5 122.7
C1' C2' H2' H2'' 237.5 237.3
H2' C2' C1' H1' 24.6 336.3
C3' C2' H2'' C1' 115.0 114.6
H2'' C2' C3' O3' 127.9 122.7
H2'' C2' C3' H3' 351.1 0.0
C3' C2' H2'' H2' 237.5 237.3
C1' C2' H2'' H2' 122.5 122.7
H2'' C2' C1' H1' 264.6 213.5
N9A C1' H1' O4' 117.8 122.3
N9A C1' H1' C2' 236.5 237.7
O4' C1' H1' C2' 118.7 115.5
H1' C1' C2' H2' 24.6 336.3
H1' C1' C2' H2'' 264.6 213.5
HO3' O3' C3' H3' 50.9 57.3
C4' C5' H5' O5' 243.8 240.0
H5' C5' C4' H4' 107.4 175.8
C4' C5' H5' H5'' 121.9 120.0
H5' C5' O5' P 61.7 60.1
O5' C5' H5' H5'' 238.1 240.0
C4' C5' H5'' O5' 116.3 120.1
H5'' C5' C4' H4' 227.4 295.8
C4' C5' H5'' H5' 238.1 240.0
H5'' C5' O5' P 301.7 300.1
O5' C5' H5'' H5' 121.9 120.0
H2P OP2 P OP3 110.5 299.9
H2P OP2 P OP1 0.0 179.9
HOP3 OP3 P OP1 360.0 60.0