PDB Chemical Component 0D2
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0D2
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C9 |
C10 |
1.392 |
1.383 |
| C9 |
C8 |
1.385 |
1.382 |
| C10 |
C11 |
1.401 |
1.382 |
| C8 |
C7 |
1.400 |
1.383 |
| C11 |
C6 |
1.401 |
1.382 |
| C7 |
C6 |
1.404 |
1.383 |
| C6 |
C5 |
1.531 |
1.507 |
| O14 |
C15 |
1.285 |
1.215 |
| O12 |
C1 |
1.272 |
1.212 |
| C1 |
C5 |
1.489 |
1.516 |
| C1 |
N2 |
1.328 |
1.348 |
| C5 |
N4 |
1.468 |
1.473 |
| C5 |
C18 |
1.573 |
1.530 |
| C15 |
N16 |
1.337 |
1.338 |
| C15 |
N17 |
1.339 |
1.345 |
| N16 |
C19 |
1.335 |
1.348 |
| N17 |
C18 |
1.462 |
1.473 |
| N2 |
C3 |
1.325 |
1.338 |
| N4 |
C3 |
1.344 |
1.345 |
| C3 |
O13 |
1.271 |
1.215 |
| C19 |
C18 |
1.488 |
1.516 |
| C19 |
O20 |
1.270 |
1.212 |
| C18 |
C21 |
1.539 |
1.507 |
| C21 |
C22 |
1.400 |
1.382 |
| C21 |
C26 |
1.398 |
1.382 |
| C22 |
C23 |
1.393 |
1.383 |
| C26 |
C25 |
1.405 |
1.383 |
| C23 |
C24 |
1.393 |
1.381 |
| C25 |
C24 |
1.391 |
1.383 |
| N16 |
H1 |
1.000 |
0.969 |
| N17 |
H2 |
1.001 |
0.970 |
| C26 |
H3 |
1.080 |
1.079 |
| C25 |
H4 |
1.080 |
1.079 |
| C24 |
H5 |
1.080 |
1.081 |
| C23 |
H6 |
1.080 |
1.080 |
| C22 |
H7 |
1.080 |
1.080 |
| N4 |
H8 |
1.000 |
0.970 |
| N2 |
H9 |
1.000 |
0.971 |
| C7 |
H10 |
1.080 |
1.080 |
| C8 |
H11 |
1.080 |
1.080 |
| C9 |
H12 |
1.080 |
1.080 |
| C10 |
H13 |
1.080 |
1.080 |
| C11 |
H14 |
1.080 |
1.080 |
Bond Angles for 0D2
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C9 |
C10 |
C11 |
120.6 |
120.0 |
| C10 |
C9 |
H12 |
120.2 |
120.0 |
| C9 |
C10 |
H13 |
119.7 |
120.0 |
| C9 |
C8 |
H11 |
120.0 |
120.0 |
| C11 |
C10 |
H13 |
119.7 |
120.0 |
| C10 |
C11 |
H14 |
119.8 |
119.9 |
| C8 |
C7 |
H10 |
119.5 |
120.1 |
| O12 |
C1 |
N2 |
122.3 |
127.2 |
| C1 |
N2 |
H9 |
127.9 |
124.2 |
| C5 |
N4 |
C3 |
106.8 |
106.6 |
| C5 |
N4 |
H8 |
126.6 |
126.7 |
| C15 |
N16 |
H1 |
128.5 |
124.2 |
| C15 |
N17 |
H2 |
126.5 |
126.7 |
| N16 |
C19 |
C18 |
114.4 |
105.7 |
| N17 |
C18 |
C21 |
108.8 |
110.6 |
| N4 |
C3 |
O13 |
124.2 |
123.8 |
| C3 |
N4 |
H8 |
126.6 |
126.7 |
| C19 |
C18 |
C21 |
110.3 |
110.6 |
| C18 |
C21 |
C22 |
120.5 |
120.0 |
| C18 |
C21 |
C26 |
121.6 |
120.0 |
| C26 |
C21 |
C22 |
117.9 |
120.0 |
| C21 |
C22 |
C23 |
121.3 |
120.0 |
| C21 |
C22 |
H7 |
119.3 |
120.0 |
| C21 |
C26 |
C25 |
120.9 |
120.0 |
| C21 |
C26 |
H3 |
119.6 |
120.1 |
| C22 |
C23 |
H6 |
119.7 |
120.0 |
| C26 |
C25 |
C24 |
120.5 |
120.0 |
| C25 |
C26 |
H3 |
119.5 |
120.0 |
| C26 |
C25 |
H4 |
119.7 |
120.0 |
| C23 |
C24 |
H5 |
120.5 |
120.0 |
| C24 |
C25 |
H4 |
119.8 |
120.0 |
| C25 |
C24 |
H5 |
120.6 |
120.0 |
Torsion Angles for 0D2
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
C9 |
C8 |
H11 |
180.0 |
180.0 |
| C11 |
C10 |
C9 |
H13 |
180.0 |
179.7 |
| C9 |
C10 |
C11 |
H14 |
181.5 |
180.0 |
| C9 |
C8 |
C7 |
H10 |
181.1 |
180.0 |
| C11 |
C10 |
C9 |
H12 |
178.7 |
180.0 |
| C9 |
C10 |
C11 |
H13 |
180.0 |
180.3 |
| C6 |
C5 |
N4 |
H8 |
65.2 |
61.4 |
| O14 |
C15 |
N16 |
H1 |
360.0 |
0.0 |
| O14 |
C15 |
N17 |
H2 |
358.6 |
0.2 |
| O12 |
C1 |
N2 |
H9 |
2.5 |
0.1 |
| C1 |
C5 |
N4 |
H8 |
181.2 |
180.0 |
| C5 |
N4 |
C3 |
O13 |
181.0 |
180.0 |
| C3 |
N4 |
C5 |
H8 |
180.0 |
179.9 |
| N17 |
C15 |
N16 |
H1 |
179.9 |
180.3 |
| C15 |
N17 |
C18 |
C21 |
117.1 |
118.9 |
| N16 |
C19 |
C18 |
C21 |
243.8 |
241.3 |
| C19 |
C18 |
N17 |
C21 |
244.9 |
241.5 |
| N17 |
C18 |
C21 |
C22 |
23.2 |
18.5 |
| N17 |
C18 |
C21 |
C26 |
200.6 |
198.7 |
| N2 |
C3 |
N4 |
H8 |
180.2 |
179.9 |
| C5 |
N4 |
C3 |
H8 |
180.0 |
180.1 |
| O13 |
C3 |
N4 |
H8 |
1.0 |
360.0 |
| N17 |
C18 |
C19 |
C21 |
114.0 |
118.6 |
| C19 |
C18 |
C21 |
C22 |
130.7 |
132.7 |
| C19 |
C18 |
C21 |
C26 |
308.1 |
312.9 |
| C26 |
C21 |
C18 |
C22 |
177.4 |
180.2 |
| C18 |
C21 |
C22 |
C23 |
179.1 |
179.7 |
| C18 |
C21 |
C22 |
H7 |
359.1 |
360.0 |
| C18 |
C21 |
C26 |
C25 |
181.1 |
180.0 |
| C18 |
C21 |
C26 |
H3 |
1.1 |
0.0 |
| C18 |
C21 |
C22 |
C26 |
177.5 |
180.2 |
| C22 |
C21 |
C26 |
C25 |
358.6 |
0.2 |
| C22 |
C21 |
C26 |
H3 |
178.6 |
180.3 |
| C21 |
C22 |
C23 |
H6 |
179.5 |
180.2 |
| C18 |
C21 |
C26 |
C22 |
182.6 |
179.8 |
| C26 |
C21 |
C22 |
C23 |
1.7 |
359.5 |
| C26 |
C21 |
C22 |
H7 |
181.6 |
179.8 |
| C21 |
C26 |
C25 |
C24 |
0.0 |
0.0 |
| C25 |
C26 |
C21 |
H3 |
180.0 |
180.0 |
| C21 |
C26 |
C25 |
H4 |
180.1 |
180.0 |
| C21 |
C22 |
C23 |
H7 |
180.0 |
180.2 |
| C22 |
C23 |
C24 |
H5 |
179.1 |
179.8 |
| C25 |
C26 |
C21 |
C22 |
358.6 |
0.2 |
| C21 |
C26 |
C25 |
H3 |
180.0 |
180.0 |
| C24 |
C25 |
C26 |
H4 |
180.0 |
180.0 |
| C26 |
C25 |
C24 |
H5 |
181.2 |
180.0 |
| C21 |
C22 |
C23 |
C24 |
359.5 |
0.5 |
| C23 |
C24 |
C25 |
H4 |
181.1 |
180.0 |
| C25 |
C24 |
C23 |
H5 |
180.0 |
179.9 |
| C24 |
C25 |
C26 |
H3 |
180.0 |
180.0 |
| C26 |
C25 |
C24 |
H4 |
180.0 |
180.0 |
| C23 |
C24 |
C25 |
H5 |
180.0 |
180.1 |
| H1 |
N16 |
C19 |
C18 |
181.5 |
180.0 |
| H2 |
N17 |
C18 |
C21 |
297.1 |
298.5 |
| H3 |
C26 |
C21 |
C22 |
178.6 |
180.3 |
| C21 |
C26 |
H3 |
C25 |
180.0 |
180.0 |
| H3 |
C26 |
C25 |
C24 |
180.0 |
180.0 |
| H3 |
C26 |
C25 |
H4 |
0.0 |
360.0 |
| C26 |
C25 |
H4 |
C24 |
180.0 |
180.0 |
| H4 |
C25 |
C26 |
H3 |
0.0 |
360.0 |
| H4 |
C25 |
C24 |
H5 |
1.1 |
360.0 |
| H5 |
C24 |
C25 |
H4 |
1.1 |
360.0 |
| H6 |
C23 |
C24 |
H5 |
359.1 |
0.0 |
| C21 |
C22 |
H7 |
C23 |
180.0 |
179.8 |
| H7 |
C22 |
C23 |
H6 |
359.5 |
0.0 |
| C5 |
N4 |
H8 |
C3 |
180.0 |
179.9 |
| H8 |
N4 |
C3 |
O13 |
1.0 |
360.0 |
| H11 |
C8 |
C7 |
H10 |
1.2 |
0.0 |
| H12 |
C9 |
C10 |
C11 |
178.7 |
180.0 |
| H12 |
C9 |
C10 |
H13 |
358.7 |
0.2 |
| H12 |
C9 |
C8 |
H11 |
360.0 |
359.8 |
| C9 |
C10 |
H13 |
C11 |
180.0 |
179.7 |
| H13 |
C10 |
C9 |
H12 |
358.7 |
0.2 |
| H13 |
C10 |
C11 |
H14 |
1.5 |
359.7 |
| H14 |
C11 |
C10 |
H13 |
1.5 |
359.7 |