Atom Nomenclature for 0CB

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0CB

Atom Name (V3) Atom Name (V2)
C13 C13
C14 C14
C16 C16
C22 C22
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
O36 O36
S32 S32
O38 O38
C34 C34
C53 C53
O57 O57
O54 O54
N30 N30
C28 C28
C15 C15
N26 N26
N24 N24
C40 C40
C46 C46
C45 C45
C44 C44
C43 C43
C42 C42
O59 O59
C61 C61
C67 C67
C66 C66
N65 N65
C74 C74
C76 C76
N82 N82
C64 C64
C63 C63
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31