PDB Chemical Component 0BY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0BY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O25 |
C11 |
1.259 |
1.216 |
| O26 |
C11 |
1.267 |
1.347 |
| C11 |
C06 |
1.498 |
1.474 |
| C06 |
C05 |
1.404 |
1.398 |
| C06 |
C07 |
1.382 |
1.399 |
| C05 |
C10 |
1.400 |
1.375 |
| C07 |
C08 |
1.380 |
1.376 |
| C10 |
C09 |
1.403 |
1.392 |
| C08 |
C09 |
1.387 |
1.393 |
| CL2 |
C21 |
1.722 |
1.736 |
| C09 |
N01 |
1.435 |
1.392 |
| N04 |
C16 |
1.442 |
1.398 |
| N04 |
C13 |
1.431 |
1.386 |
| C21 |
C16 |
1.393 |
1.390 |
| C21 |
C20 |
1.390 |
1.382 |
| C16 |
C17 |
1.393 |
1.389 |
| C20 |
C19 |
1.384 |
1.382 |
| N02 |
C13 |
1.352 |
1.329 |
| N02 |
C12 |
1.335 |
1.324 |
| C13 |
C14 |
1.390 |
1.396 |
| C17 |
C18 |
1.385 |
1.381 |
| N01 |
C12 |
1.431 |
1.385 |
| C19 |
C18 |
1.392 |
1.383 |
| C12 |
N03 |
1.333 |
1.325 |
| C14 |
C15 |
1.394 |
1.380 |
| N03 |
C15 |
1.341 |
1.326 |
| N01 |
H1 |
1.000 |
0.970 |
| N04 |
H2 |
1.000 |
0.971 |
| C05 |
H3 |
1.080 |
1.080 |
| C07 |
H4 |
1.080 |
1.080 |
| C08 |
H5 |
1.080 |
1.080 |
| C10 |
H6 |
1.080 |
1.081 |
| C14 |
H7 |
1.080 |
1.080 |
| C15 |
H8 |
1.080 |
1.080 |
| C17 |
H9 |
1.080 |
1.081 |
| C18 |
H10 |
1.080 |
1.080 |
| C19 |
H11 |
1.080 |
1.080 |
| C20 |
H12 |
1.080 |
1.080 |
| O26 |
H13 |
0.950 |
0.967 |
Bond Angles for 0BY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C06 |
C05 |
C10 |
119.9 |
120.0 |
| C06 |
C05 |
H3 |
120.1 |
120.0 |
| C06 |
C07 |
C08 |
120.3 |
119.9 |
| C06 |
C07 |
H4 |
119.8 |
120.0 |
| C05 |
C10 |
C09 |
119.4 |
120.1 |
| C10 |
C05 |
H3 |
120.1 |
120.0 |
| C05 |
C10 |
H6 |
120.3 |
120.0 |
| C07 |
C08 |
C09 |
120.9 |
120.1 |
| C08 |
C07 |
H4 |
119.9 |
120.0 |
| C07 |
C08 |
H5 |
119.6 |
120.0 |
| C09 |
C08 |
H5 |
119.5 |
119.9 |
| C09 |
N01 |
C12 |
124.7 |
120.0 |
| C09 |
N01 |
H1 |
117.7 |
119.9 |
| C13 |
N04 |
C16 |
122.3 |
120.1 |
| N04 |
C16 |
C17 |
120.7 |
120.1 |
| C16 |
N04 |
H2 |
118.9 |
120.0 |
| N02 |
C13 |
N04 |
121.0 |
120.4 |
| N04 |
C13 |
C14 |
121.3 |
120.5 |
| C13 |
N04 |
H2 |
118.8 |
120.0 |
| C21 |
C20 |
H12 |
120.4 |
119.9 |
| C16 |
C17 |
C18 |
119.2 |
120.0 |
| C16 |
C17 |
H9 |
120.4 |
120.0 |
| C20 |
C19 |
H11 |
120.1 |
119.9 |
| C12 |
N02 |
C13 |
121.0 |
120.6 |
| N02 |
C13 |
C14 |
117.7 |
119.0 |
| N01 |
C12 |
N02 |
120.8 |
119.2 |
| N02 |
C12 |
N03 |
121.8 |
121.7 |
| C13 |
C14 |
C15 |
120.4 |
118.5 |
| C13 |
C14 |
H7 |
119.8 |
120.7 |
| C18 |
C17 |
H9 |
120.4 |
120.0 |
| C17 |
C18 |
H10 |
119.4 |
120.0 |
| N01 |
C12 |
N03 |
117.4 |
119.2 |
| C12 |
N01 |
H1 |
117.7 |
120.0 |
| C19 |
C18 |
H10 |
119.4 |
120.0 |
| C12 |
N03 |
C15 |
120.8 |
120.9 |
| N03 |
C15 |
C14 |
118.3 |
119.3 |
| C15 |
C14 |
H7 |
119.8 |
120.8 |
| C14 |
C15 |
H8 |
120.8 |
120.4 |
| N03 |
C15 |
H8 |
120.8 |
120.3 |
Torsion Angles for 0BY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C11 |
C06 |
C05 |
H3 |
0.4 |
359.8 |
| C11 |
C06 |
C07 |
H4 |
0.2 |
0.0 |
| C06 |
C05 |
C10 |
C09 |
358.8 |
0.1 |
| C10 |
C05 |
C06 |
H3 |
180.0 |
180.2 |
| C06 |
C05 |
C10 |
H6 |
178.8 |
179.7 |
| C07 |
C06 |
C05 |
C10 |
1.4 |
359.9 |
| C07 |
C06 |
C05 |
H3 |
181.4 |
179.8 |
| C06 |
C07 |
C08 |
C09 |
359.8 |
0.2 |
| C08 |
C07 |
C06 |
H4 |
180.0 |
179.9 |
| C06 |
C07 |
C08 |
H5 |
179.8 |
180.0 |
| C06 |
C05 |
C10 |
H3 |
180.0 |
179.8 |
| C06 |
C07 |
C08 |
H4 |
180.0 |
180.1 |
| C09 |
C08 |
C07 |
H5 |
180.0 |
180.2 |
| C09 |
C10 |
C05 |
H3 |
178.8 |
180.2 |
| C05 |
C10 |
C09 |
H6 |
180.0 |
179.7 |
| C10 |
C09 |
C08 |
H5 |
180.3 |
180.0 |
| C10 |
C09 |
N01 |
C12 |
342.2 |
326.0 |
| C10 |
C09 |
N01 |
H1 |
162.2 |
145.7 |
| C05 |
C10 |
C09 |
C08 |
0.4 |
0.1 |
| C09 |
C08 |
C07 |
H4 |
179.9 |
180.1 |
| C07 |
C08 |
C09 |
H5 |
180.0 |
179.8 |
| C08 |
C09 |
N01 |
C12 |
163.1 |
145.9 |
| C08 |
C09 |
N01 |
H1 |
343.1 |
325.6 |
| CL2 |
C21 |
C20 |
H12 |
0.1 |
360.0 |
| C09 |
N01 |
C12 |
N02 |
352.9 |
174.6 |
| C09 |
N01 |
C12 |
N03 |
173.0 |
354.6 |
| C12 |
N01 |
C09 |
H1 |
180.0 |
180.3 |
| N02 |
C13 |
N04 |
C16 |
184.6 |
353.4 |
| C16 |
N04 |
C13 |
C14 |
4.7 |
173.5 |
| C13 |
N04 |
C16 |
H2 |
180.0 |
180.0 |
| N04 |
C16 |
C17 |
C18 |
179.6 |
180.0 |
| N04 |
C16 |
C17 |
H9 |
359.6 |
360.0 |
| C13 |
N04 |
C16 |
C17 |
55.2 |
340.4 |
| C16 |
N04 |
C13 |
H2 |
180.0 |
180.0 |
| C12 |
N02 |
C13 |
N04 |
179.9 |
180.0 |
| N02 |
C13 |
N04 |
C14 |
180.0 |
179.9 |
| N04 |
C13 |
C14 |
C15 |
180.0 |
179.9 |
| N04 |
C13 |
C14 |
H7 |
360.0 |
360.0 |
| C21 |
C16 |
N04 |
H2 |
53.4 |
340.1 |
| C21 |
C16 |
C17 |
H9 |
181.3 |
180.3 |
| C21 |
C20 |
C19 |
H11 |
180.1 |
179.7 |
| C17 |
C16 |
N04 |
H2 |
235.2 |
160.4 |
| C18 |
C17 |
C16 |
H9 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H10 |
178.8 |
180.0 |
| C20 |
C19 |
C18 |
H10 |
180.5 |
180.0 |
| N04 |
C13 |
N02 |
C14 |
180.0 |
180.1 |
| N02 |
C13 |
N04 |
H2 |
4.6 |
173.4 |
| N01 |
C12 |
N02 |
C13 |
180.2 |
180.0 |
| C13 |
N02 |
C12 |
N03 |
0.0 |
0.0 |
| N02 |
C13 |
C14 |
C15 |
0.0 |
360.0 |
| N02 |
C13 |
C14 |
H7 |
180.0 |
180.0 |
| C12 |
N02 |
C13 |
C14 |
359.9 |
360.0 |
| N01 |
C12 |
N02 |
N03 |
180.2 |
180.0 |
| N02 |
C12 |
N01 |
H1 |
172.9 |
354.9 |
| N02 |
C12 |
N03 |
C15 |
0.1 |
360.0 |
| C14 |
C13 |
N04 |
C16 |
4.7 |
173.5 |
| N02 |
C13 |
C14 |
N04 |
180.0 |
180.1 |
| C14 |
C13 |
N04 |
H2 |
184.6 |
353.5 |
| N03 |
C15 |
C14 |
C13 |
0.1 |
0.0 |
| C15 |
C14 |
C13 |
H7 |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
H8 |
180.1 |
180.0 |
| C16 |
C17 |
C18 |
H9 |
180.0 |
180.0 |
| C19 |
C18 |
C17 |
H10 |
180.0 |
180.0 |
| C09 |
N01 |
C12 |
H1 |
180.0 |
179.7 |
| N02 |
C12 |
N01 |
N03 |
179.8 |
180.0 |
| N01 |
C12 |
N03 |
C15 |
179.9 |
180.0 |
| C19 |
C18 |
C17 |
H9 |
178.7 |
180.0 |
| C17 |
C18 |
C19 |
H10 |
180.0 |
180.0 |
| N03 |
C12 |
N02 |
C13 |
0.0 |
0.0 |
| N01 |
C12 |
N03 |
N02 |
179.8 |
180.0 |
| N03 |
C12 |
N01 |
H1 |
353.1 |
174.8 |
| C12 |
N03 |
C15 |
C14 |
359.8 |
360.0 |
| C12 |
N03 |
C15 |
H8 |
179.9 |
180.0 |
| C13 |
C14 |
C15 |
H7 |
180.0 |
180.0 |
| N03 |
C15 |
C14 |
H8 |
180.0 |
180.1 |
| C13 |
C14 |
C15 |
N03 |
0.1 |
0.0 |
| N03 |
C15 |
C14 |
H7 |
180.1 |
180.0 |
| C14 |
C15 |
N03 |
H8 |
180.0 |
179.9 |
| C09 |
N01 |
H1 |
C12 |
180.0 |
180.3 |
| H1 |
N01 |
C12 |
N02 |
172.9 |
354.9 |
| H1 |
N01 |
C12 |
N03 |
353.1 |
174.8 |
| C13 |
N04 |
H2 |
C16 |
180.0 |
180.0 |
| H2 |
N04 |
C16 |
C17 |
235.2 |
160.4 |
| H2 |
N04 |
C13 |
C14 |
184.6 |
353.5 |
| C06 |
C05 |
H3 |
C10 |
180.0 |
180.2 |
| H3 |
C05 |
C10 |
C09 |
178.8 |
180.2 |
| H3 |
C05 |
C10 |
H6 |
358.8 |
359.9 |
| C06 |
C07 |
H4 |
C08 |
180.0 |
179.9 |
| H4 |
C07 |
C08 |
C09 |
179.9 |
180.1 |
| H4 |
C07 |
C08 |
H5 |
359.9 |
359.9 |
| C07 |
C08 |
H5 |
C09 |
180.0 |
180.2 |
| H5 |
C08 |
C07 |
H4 |
359.9 |
359.9 |
| C05 |
C10 |
H6 |
C09 |
180.0 |
180.3 |
| H6 |
C10 |
C05 |
H3 |
358.8 |
359.9 |
| C13 |
C14 |
H7 |
C15 |
180.0 |
180.0 |
| H7 |
C14 |
C15 |
H8 |
0.1 |
359.9 |
| N03 |
C15 |
H8 |
C14 |
180.0 |
179.9 |
| H8 |
C15 |
C14 |
H7 |
0.1 |
359.9 |
| C16 |
C17 |
H9 |
C18 |
180.0 |
180.0 |
| H9 |
C17 |
C18 |
H10 |
358.8 |
0.0 |
| H10 |
C18 |
C17 |
H9 |
358.8 |
0.0 |
| H11 |
C19 |
C18 |
H10 |
0.5 |
0.0 |
| H12 |
C20 |
C19 |
H11 |
0.1 |
360.0 |