PDB Chemical Component 0BN
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0BN
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.379 |
1.469 |
| N |
H |
1.000 |
1.009 |
| CA |
C |
1.475 |
1.507 |
| CA |
C9 |
1.595 |
1.530 |
| CA |
HA |
1.099 |
1.090 |
| C |
O |
1.298 |
1.208 |
| C |
OXT |
1.295 |
1.343 |
| N2 |
C10 |
1.222 |
1.378 |
| N2 |
H3 |
1.000 |
0.970 |
| N2 |
H4 |
1.000 |
0.970 |
| N3 |
C10 |
1.259 |
1.303 |
| N3 |
H5 |
1.000 |
0.970 |
| C3 |
C4 |
1.479 |
1.384 |
| C3 |
C8 |
1.383 |
1.383 |
| C3 |
C9 |
1.375 |
1.508 |
| C4 |
C5 |
1.336 |
1.380 |
| C4 |
H6 |
1.080 |
1.080 |
| C5 |
C6 |
1.366 |
1.394 |
| C5 |
H7 |
1.080 |
1.081 |
| C6 |
C7 |
1.431 |
1.394 |
| C6 |
C10 |
1.400 |
1.481 |
| C7 |
C8 |
1.335 |
1.380 |
| C7 |
H8 |
1.080 |
1.080 |
| C8 |
H9 |
1.080 |
1.080 |
| C9 |
H10 |
1.100 |
1.090 |
| C9 |
H11 |
1.100 |
1.089 |
| OXT |
HXT |
0.950 |
0.967 |
| N |
H2 |
1.000 |
1.009 |
Bond Angles for 0BN
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| N |
CA |
C |
106.3 |
109.4 |
| N |
CA |
C9 |
110.2 |
109.5 |
| N |
CA |
HA |
110.6 |
109.5 |
| CA |
N |
H2 |
109.5 |
111.0 |
| H |
N |
H2 |
109.5 |
111.0 |
| C |
CA |
C9 |
108.2 |
109.5 |
| C |
CA |
HA |
112.6 |
109.5 |
| CA |
C |
O |
117.3 |
120.0 |
| CA |
C |
OXT |
118.8 |
120.0 |
| C9 |
CA |
HA |
108.9 |
109.5 |
| CA |
C9 |
C3 |
113.7 |
109.5 |
| CA |
C9 |
H10 |
108.1 |
109.5 |
| CA |
C9 |
H11 |
108.1 |
109.5 |
| O |
C |
OXT |
123.5 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| C10 |
N2 |
H3 |
120.0 |
119.9 |
| C10 |
N2 |
H4 |
120.0 |
120.0 |
| N2 |
C10 |
N3 |
119.9 |
120.0 |
| N2 |
C10 |
C6 |
119.3 |
120.0 |
| H3 |
N2 |
H4 |
120.0 |
120.1 |
| C10 |
N3 |
H5 |
112.0 |
120.0 |
| N3 |
C10 |
C6 |
120.8 |
120.0 |
| C4 |
C3 |
C8 |
122.3 |
120.3 |
| C4 |
C3 |
C9 |
115.6 |
119.9 |
| C3 |
C4 |
C5 |
117.4 |
120.1 |
| C3 |
C4 |
H6 |
121.3 |
120.0 |
| C8 |
C3 |
C9 |
122.1 |
119.9 |
| C3 |
C8 |
C7 |
117.6 |
120.1 |
| C3 |
C8 |
H9 |
121.2 |
119.9 |
| C3 |
C9 |
H10 |
108.1 |
109.5 |
| C3 |
C9 |
H11 |
108.1 |
109.4 |
| C5 |
C4 |
H6 |
121.3 |
119.9 |
| C4 |
C5 |
C6 |
120.1 |
119.9 |
| C4 |
C5 |
H7 |
119.9 |
120.0 |
| C6 |
C5 |
H7 |
120.0 |
120.1 |
| C5 |
C6 |
C7 |
122.0 |
119.7 |
| C5 |
C6 |
C10 |
118.3 |
120.1 |
| C7 |
C6 |
C10 |
119.7 |
120.1 |
| C6 |
C7 |
C8 |
120.6 |
119.9 |
| C6 |
C7 |
H8 |
119.7 |
120.1 |
| C8 |
C7 |
H8 |
119.7 |
120.1 |
| C7 |
C8 |
H9 |
121.2 |
119.9 |
| H10 |
C9 |
H11 |
110.8 |
109.5 |
Torsion Angles for 0BN
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C |
CA |
N |
C9 |
117.1 |
120.0 |
| C |
CA |
N |
HA |
237.5 |
240.0 |
| N |
CA |
C |
O |
163.6 |
340.0 |
| N |
CA |
C |
OXT |
337.0 |
160.0 |
| C9 |
CA |
N |
HA |
120.4 |
120.0 |
| N |
CA |
C9 |
C3 |
160.5 |
295.0 |
| N |
CA |
C9 |
H10 |
280.5 |
55.0 |
| N |
CA |
C9 |
H11 |
40.5 |
175.0 |
| H |
N |
CA |
C |
180.0 |
60.0 |
| H |
N |
CA |
C9 |
62.9 |
300.1 |
| H |
N |
CA |
HA |
302.5 |
180.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| C |
CA |
N |
H |
180.0 |
60.0 |
| N |
CA |
C |
C9 |
241.6 |
240.0 |
| N |
CA |
C |
HA |
121.3 |
120.0 |
| C |
CA |
N |
H2 |
300.0 |
184.0 |
| C9 |
CA |
C |
HA |
239.7 |
240.0 |
| C |
CA |
C9 |
C3 |
44.6 |
175.0 |
| C |
CA |
C9 |
H10 |
164.6 |
295.0 |
| C |
CA |
C9 |
H11 |
284.6 |
55.0 |
| O |
C |
CA |
OXT |
186.7 |
180.0 |
| CA |
C |
OXT |
HXT |
187.1 |
180.0 |
| C9 |
CA |
N |
H |
62.9 |
300.1 |
| N |
CA |
C9 |
C |
115.9 |
120.0 |
| N |
CA |
C9 |
HA |
238.5 |
240.0 |
| C9 |
CA |
N |
H2 |
183.0 |
64.0 |
| C |
CA |
C9 |
HA |
122.6 |
120.0 |
| C9 |
CA |
C |
O |
282.0 |
100.0 |
| C9 |
CA |
C |
OXT |
95.4 |
280.0 |
| C4 |
C3 |
C9 |
CA |
280.4 |
89.9 |
| C8 |
C3 |
C9 |
CA |
103.1 |
269.8 |
| C3 |
C9 |
CA |
H10 |
240.0 |
240.0 |
| C3 |
C9 |
CA |
H11 |
120.0 |
120.0 |
| H10 |
C9 |
CA |
H11 |
240.0 |
240.0 |
| HA |
CA |
N |
H |
302.5 |
180.0 |
| N |
CA |
HA |
C |
241.2 |
240.0 |
| N |
CA |
HA |
C9 |
121.2 |
120.0 |
| HA |
CA |
N |
H2 |
62.5 |
304.0 |
| C |
CA |
HA |
C9 |
240.0 |
240.0 |
| HA |
CA |
C |
O |
42.4 |
220.1 |
| HA |
CA |
C |
OXT |
215.7 |
40.0 |
| HA |
CA |
C9 |
C3 |
281.9 |
55.0 |
| HA |
CA |
C9 |
H10 |
41.9 |
175.0 |
| HA |
CA |
C9 |
H11 |
161.9 |
295.0 |
| O |
C |
CA |
C9 |
282.0 |
100.0 |
| O |
C |
CA |
HA |
42.4 |
220.1 |
| CA |
C |
O |
OXT |
173.0 |
180.0 |
| O |
C |
OXT |
HXT |
0.0 |
360.0 |
| OXT |
C |
CA |
C9 |
95.4 |
280.0 |
| OXT |
C |
CA |
HA |
215.7 |
40.0 |
| CA |
C |
OXT |
O |
187.1 |
180.0 |
| H3 |
N2 |
C10 |
H4 |
180.0 |
180.0 |
| N2 |
C10 |
N3 |
H5 |
179.6 |
179.9 |
| N3 |
C10 |
N2 |
C6 |
180.4 |
180.1 |
| C5 |
C6 |
C10 |
N2 |
180.7 |
180.0 |
| C7 |
C6 |
C10 |
N2 |
359.7 |
0.0 |
| C10 |
N2 |
H3 |
H4 |
180.0 |
180.0 |
| H3 |
N2 |
C10 |
N3 |
180.4 |
0.0 |
| H3 |
N2 |
C10 |
C6 |
0.0 |
180.0 |
| C10 |
N2 |
H4 |
H3 |
180.0 |
180.0 |
| H4 |
N2 |
C10 |
N3 |
0.4 |
180.0 |
| H4 |
N2 |
C10 |
C6 |
180.0 |
359.9 |
| N3 |
C10 |
N2 |
H3 |
180.4 |
0.0 |
| N3 |
C10 |
N2 |
H4 |
0.4 |
180.0 |
| N2 |
C10 |
N3 |
C6 |
179.6 |
179.9 |
| C5 |
C6 |
C10 |
N3 |
0.3 |
359.9 |
| C7 |
C6 |
C10 |
N3 |
179.3 |
180.0 |
| H5 |
N3 |
C10 |
C6 |
0.0 |
0.0 |
| CA |
C9 |
C3 |
C4 |
280.4 |
89.9 |
| C8 |
C3 |
C4 |
C9 |
177.2 |
180.2 |
| C4 |
C3 |
C8 |
C7 |
3.8 |
0.1 |
| C4 |
C3 |
C8 |
H9 |
183.8 |
180.0 |
| C4 |
C3 |
C9 |
H10 |
160.4 |
330.0 |
| C4 |
C3 |
C9 |
H11 |
40.4 |
210.0 |
| C5 |
C4 |
C3 |
H6 |
180.0 |
179.9 |
| C3 |
C4 |
C5 |
C6 |
359.4 |
0.1 |
| C3 |
C4 |
C5 |
H7 |
179.4 |
180.0 |
| CA |
C9 |
C3 |
C8 |
103.1 |
269.8 |
| C4 |
C3 |
C8 |
C9 |
183.0 |
179.8 |
| C8 |
C3 |
C4 |
C5 |
357.9 |
359.9 |
| C8 |
C3 |
C4 |
H6 |
177.9 |
180.0 |
| C8 |
C3 |
C9 |
H10 |
343.1 |
149.8 |
| C8 |
C3 |
C9 |
H11 |
223.2 |
29.8 |
| C6 |
C7 |
C8 |
C3 |
357.1 |
359.9 |
| C3 |
C8 |
C7 |
H8 |
177.1 |
180.0 |
| C7 |
C8 |
C3 |
H9 |
180.0 |
180.0 |
| C3 |
C9 |
CA |
HA |
281.9 |
55.0 |
| CA |
C9 |
C3 |
H10 |
120.0 |
120.0 |
| CA |
C9 |
C3 |
H11 |
240.0 |
240.0 |
| C4 |
C3 |
C9 |
C8 |
177.2 |
180.2 |
| C9 |
C3 |
C4 |
C5 |
180.7 |
179.7 |
| C9 |
C3 |
C4 |
H6 |
0.7 |
359.8 |
| C9 |
C3 |
C8 |
C7 |
180.8 |
180.3 |
| C9 |
C3 |
C8 |
H9 |
0.8 |
0.2 |
| H10 |
C9 |
C3 |
H11 |
120.0 |
120.0 |
| C5 |
C4 |
C3 |
C8 |
357.9 |
359.9 |
| C5 |
C4 |
C3 |
C9 |
180.7 |
179.7 |
| C3 |
C4 |
C5 |
H6 |
180.0 |
180.1 |
| C6 |
C5 |
C4 |
H7 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
C7 |
1.5 |
359.9 |
| C4 |
C5 |
C6 |
C10 |
180.4 |
180.0 |
| H6 |
C4 |
C3 |
C8 |
177.9 |
180.0 |
| H6 |
C4 |
C3 |
C9 |
0.7 |
359.8 |
| C3 |
C4 |
H6 |
C5 |
180.0 |
179.9 |
| H6 |
C4 |
C5 |
C6 |
179.4 |
180.0 |
| H6 |
C4 |
C5 |
H7 |
359.4 |
359.9 |
| N2 |
C10 |
C6 |
C5 |
180.7 |
180.0 |
| N3 |
C10 |
C6 |
C5 |
0.3 |
359.9 |
| C6 |
C5 |
C4 |
H6 |
179.4 |
180.0 |
| C4 |
C5 |
C6 |
H7 |
180.0 |
179.9 |
| C7 |
C6 |
C5 |
C10 |
181.0 |
180.0 |
| C5 |
C6 |
C7 |
C8 |
0.3 |
0.1 |
| C5 |
C6 |
C7 |
H8 |
180.4 |
180.0 |
| H7 |
C5 |
C4 |
H6 |
359.4 |
359.9 |
| C4 |
C5 |
H7 |
C6 |
180.0 |
180.1 |
| H7 |
C5 |
C6 |
C7 |
181.5 |
180.0 |
| H7 |
C5 |
C6 |
C10 |
0.5 |
0.1 |
| N2 |
C10 |
C6 |
C7 |
359.7 |
0.0 |
| N3 |
C10 |
C6 |
C7 |
179.3 |
180.0 |
| C3 |
C8 |
C7 |
C6 |
357.1 |
359.9 |
| C7 |
C6 |
C5 |
H7 |
181.5 |
180.0 |
| C5 |
C6 |
C7 |
C10 |
178.9 |
180.0 |
| C8 |
C7 |
C6 |
H8 |
180.0 |
180.1 |
| C6 |
C7 |
C8 |
H9 |
177.1 |
180.0 |
| C6 |
C10 |
N2 |
H3 |
0.0 |
180.0 |
| C6 |
C10 |
N2 |
H4 |
180.0 |
359.9 |
| N2 |
C10 |
C6 |
N3 |
180.4 |
180.1 |
| C6 |
C10 |
N3 |
H5 |
0.0 |
0.0 |
| C10 |
C6 |
C5 |
H7 |
0.5 |
0.1 |
| C5 |
C6 |
C10 |
C7 |
181.0 |
180.0 |
| C10 |
C6 |
C7 |
C8 |
181.4 |
180.0 |
| C10 |
C6 |
C7 |
H8 |
1.4 |
359.9 |
| C7 |
C8 |
C3 |
C9 |
180.8 |
180.3 |
| C3 |
C8 |
C7 |
H9 |
180.0 |
180.0 |
| C8 |
C7 |
C6 |
C10 |
181.4 |
180.0 |
| C6 |
C7 |
C8 |
H8 |
180.0 |
179.9 |
| H8 |
C7 |
C6 |
C10 |
1.4 |
359.9 |
| C6 |
C7 |
H8 |
C8 |
180.0 |
180.1 |
| H8 |
C7 |
C8 |
H9 |
357.1 |
0.1 |
| H9 |
C8 |
C3 |
C9 |
0.8 |
0.2 |
| C3 |
C8 |
H9 |
C7 |
180.0 |
180.0 |
| H9 |
C8 |
C7 |
H8 |
357.1 |
0.1 |
| H10 |
C9 |
CA |
HA |
41.9 |
175.0 |
| CA |
C9 |
H10 |
C3 |
236.6 |
240.0 |
| CA |
C9 |
H10 |
H11 |
118.3 |
120.0 |
| C3 |
C9 |
H10 |
H11 |
241.7 |
240.0 |
| H11 |
C9 |
CA |
HA |
161.9 |
295.0 |
| CA |
C9 |
H11 |
C3 |
123.5 |
120.0 |
| CA |
C9 |
H11 |
H10 |
241.7 |
240.0 |
| C3 |
C9 |
H11 |
H10 |
118.3 |
120.0 |
| CA |
N |
H2 |
H |
239.9 |
236.0 |
| H2 |
N |
CA |
C |
300.0 |
184.0 |
| H2 |
N |
CA |
C9 |
183.0 |
64.0 |
| H2 |
N |
CA |
HA |
62.5 |
304.0 |