PDB Chemical Component 0BM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 0BM

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.387 1.383
C1 C6 1.392 1.382
C1 H1 1.080 1.081
C2 C3 1.384 1.382
C2 H2 1.080 1.080
C3 C4 1.380 1.382
C3 H3 1.080 1.080
C4 H4 1.080 1.081
C5 C4 1.388 1.382
C5 H5 1.080 1.080
C6 C5 1.392 1.383
C7 C6 1.507 1.507
C7 H17 1.100 1.089
C7 H27 1.100 1.090
C8 C7 1.535 1.530
C8 H8 1.100 1.090
N9 C8 1.458 1.465
N9 S10 1.637 1.656
N9 HN9 1.000 0.970
S10 O11 1.427 1.421
O12 S10 1.429 1.421
C13 S10 1.748 1.814
C13 H113 1.100 1.091
C13 H213 1.100 1.090
C13 H313 1.100 1.090
C15 N17 1.352 1.347
C15 C8 1.536 1.506
O16 C15 1.219 1.214
N17 C18 1.471 1.475
C18 H118 1.100 1.089
C18 H218 1.100 1.090
C19 C18 1.498 1.548
C19 H119 1.100 1.090
C19 H219 1.100 1.090
C20 C19 1.508 1.551
C20 H120 1.100 1.090
C20 H220 1.100 1.090
C21 C20 1.541 1.544
C21 N17 1.469 1.470
C21 H21 1.101 1.090
C22 C21 1.526 1.508
C22 O23 1.230 1.212
N24 C22 1.327 1.348
N24 HN24 1.000 0.970
C25 N24 1.456 1.465
C25 H125 1.100 1.089
C25 H225 1.100 1.090
C26 C25 1.523 1.530
C26 C31 1.529 1.530
C26 H26 1.100 1.090
C27 C26 1.526 1.531
C27 H127 1.100 1.090
C27 H227 1.100 1.091
C28 C27 1.537 1.532
C28 N29 1.474 1.470
C28 H128 1.100 1.091
C28 H228 1.100 1.089
N29 C30 1.478 1.469
C30 C31 1.535 1.531
C30 H130 1.100 1.090
C30 H230 1.100 1.090
C31 H131 1.100 1.090
C31 H231 1.100 1.090
C32 N29 1.442 1.375
C32 N33 1.451 1.375
N33 H133 1.000 0.970
N33 H233 1.000 0.970
N34 C32 1.297 1.303
N34 H134 1.001 0.971

Bond Angles for 0BM

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 H1 119.6 120.0
C1 C2 C3 120.1 120.0
C1 C2 H2 119.9 120.0
C1 C6 C5 118.4 120.0
C3 C2 H2 119.9 120.0
C2 C3 C4 119.7 120.0
C2 C3 H3 120.1 120.0
C3 C4 H4 119.9 120.0
C5 C4 H4 119.9 120.0
C4 C5 H5 119.6 120.1
C6 C5 C4 120.8 120.0
C6 C5 H5 119.6 119.9
C7 C6 C5 120.9 120.0
C6 C7 H17 108.3 109.5
C6 C7 H27 108.3 109.4
C8 C7 C6 113.0 109.5
H17 C7 H27 110.6 109.4
C8 C7 H17 108.3 109.5
C8 C7 H27 108.3 109.5
C7 C8 H8 108.3 109.5
N9 C8 C7 107.8 109.5
C15 C8 C7 111.6 109.5
N9 C8 H8 113.0 109.5
C15 C8 H8 109.3 109.5
C8 N9 HN9 105.2 120.1
H113 C13 H213 109.5 109.4
H113 C13 H313 109.5 109.5
H213 C13 H313 109.5 109.5
O16 C15 N17 121.6 120.0
C15 N17 C18 128.1 125.6
N17 C18 H118 111.8 110.4
N17 C18 H218 111.8 110.4
N17 C18 C19 102.7 104.9
C21 N17 C18 110.9 108.7
H118 C18 H218 107.0 110.4
C19 C18 H118 111.8 110.4
C19 C18 H218 111.8 110.2
C18 C19 H119 111.3 111.1
C18 C19 H219 111.3 110.8
C20 C19 C18 104.1 101.7
H119 C19 H219 107.6 110.9
C20 C19 H119 111.3 111.0
C20 C19 H219 111.3 111.0
C19 C20 H120 110.7 110.7
C19 C20 H220 110.7 110.7
C21 C20 C19 105.8 102.9
H120 C20 H220 108.2 110.8
C21 C20 H120 110.7 110.7
C21 C20 H220 110.7 110.7
C20 C21 H21 112.5 109.9
C22 C21 C20 110.9 109.9
C22 C21 H21 106.6 110.0
C25 N24 HN24 119.4 120.0
H125 C25 H225 112.3 109.5
C26 C25 H125 106.5 109.5
C26 C25 H225 106.5 109.5
C31 C26 H26 104.6 109.5
C27 C26 C31 109.0 109.5
C26 C31 C30 112.5 109.3
C26 C31 H131 108.5 109.5
C26 C31 H231 108.5 109.5
C27 C26 H26 111.5 109.4
H127 C27 H227 110.3 109.5
C28 C27 H127 108.7 109.6
C28 C27 H227 108.7 109.5
N29 C28 H128 108.7 109.6
N29 C28 H228 108.7 109.6
C28 N29 C30 114.3 118.7
H128 C28 H228 110.2 109.7
N29 C30 C31 111.7 108.8
N29 C30 H130 108.8 109.5
N29 C30 H230 108.7 109.6
C31 C30 H130 108.7 109.6
C31 C30 H230 108.8 109.6
C30 C31 H131 108.5 109.5
C30 C31 H231 108.5 109.5
H130 C30 H230 110.2 109.7
H131 C31 H231 110.4 109.5
C32 N33 H133 120.0 120.0
C32 N33 H233 120.0 120.0
H133 N33 H233 120.0 120.0

Torsion Angles for 0BM

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 C5 0.3 0.2
C3 C2 C1 H2 180.0 180.1
C1 C2 C3 C4 0.1 359.7
C1 C2 C3 H3 180.2 179.9
C1 C6 C5 C4 359.8 359.8
C1 C6 C5 H5 179.8 179.7
C7 C6 C1 C5 180.4 179.8
C1 C6 C7 H17 230.0 150.2
C1 C6 C7 H27 350.0 30.3
H1 C1 C2 C3 179.7 180.0
H1 C1 C2 H2 359.7 359.9
H1 C1 C6 C5 180.3 180.2
C3 C2 C1 H1 179.7 180.0
C1 C2 C3 H2 180.0 179.9
C2 C3 C4 H4 180.0 180.3
H2 C2 C1 H1 359.7 359.9
C1 C2 H2 C3 180.0 180.1
H2 C2 C3 C4 180.1 179.8
H2 C2 C3 H3 0.1 360.0
C4 C3 C2 H2 180.1 179.8
C2 C3 C4 H3 180.0 180.2
C5 C4 C3 H4 180.0 180.0
C3 C4 C5 H5 180.0 180.1
H3 C3 C2 H2 0.1 360.0
C2 C3 H3 C4 180.0 179.8
H3 C3 C4 H4 360.0 0.1
H4 C4 C5 H5 0.0 0.1
C6 C5 C4 H4 180.0 180.0
C2 C3 C4 C5 360.0 0.3
C3 C4 C5 H4 180.0 180.0
C6 C5 C4 H5 180.0 179.9
C7 C6 C5 C4 179.4 180.0
H5 C5 C4 H4 0.0 0.1
C6 C5 H5 C4 180.0 180.1
C7 C6 C5 H5 359.4 359.9
C4 C5 C6 H5 180.0 180.1
C5 C6 C7 H17 50.5 330.0
C5 C6 C7 H27 170.4 210.0
C8 C7 C6 C5 290.5 90.0
C1 C6 C7 C5 179.6 180.2
H17 C7 C6 H27 240.0 120.0
C8 C7 C6 H17 240.0 120.0
C8 C7 C6 H27 120.0 240.0
C6 C7 C8 H8 56.9 305.0
N9 C8 C7 C6 179.6 65.0
C15 C8 C7 C6 296.5 185.0
H17 C7 C6 C5 50.5 330.0
C6 C7 H17 H27 118.6 240.0
C8 C7 H17 C6 122.9 240.0
C8 C7 H17 H27 241.4 120.0
H17 C7 C8 H8 296.9 65.0
N9 C8 C7 H17 59.6 185.0
C15 C8 C7 H17 176.5 305.0
H27 C7 C6 C5 170.4 210.0
C6 C7 H27 H17 241.5 120.0
C8 C7 H27 C6 237.1 120.0
C8 C7 H27 H17 118.6 240.0
H27 C7 C8 H8 176.9 185.0
N9 C8 C7 H27 299.6 305.0
C15 C8 C7 H27 56.6 65.0
C6 C7 C8 H17 120.0 239.9
C6 C7 C8 H27 240.0 120.0
H17 C7 C8 H27 120.0 240.0
N9 C8 C7 H8 122.6 120.0
C15 C8 C7 H8 239.6 240.0
C7 C8 N9 HN9 335.7 35.0
H8 C8 C7 C6 56.9 305.0
H8 C8 C7 H17 296.9 65.0
H8 C8 C7 H27 176.9 185.0
N9 C8 H8 C7 240.6 240.0
C15 C8 H8 C7 121.8 120.0
H8 C8 N9 HN9 95.4 155.0
C7 C8 N9 H8 240.3 240.0
C15 C8 N9 C7 239.9 240.0
C15 C8 N9 H8 120.2 120.0
HN9 N9 C8 C7 335.7 35.0
HN9 N9 C8 H8 95.4 155.0
H213 C13 H113 H313 120.0 120.0
H113 C13 H213 H313 240.0 240.0
H113 C13 H313 H213 120.0 119.9
N17 C15 C8 C7 109.5 80.0
N17 C15 C8 H8 349.7 320.1
C15 N17 C18 H118 327.5 323.0
C15 N17 C18 H218 87.5 85.4
C15 N17 C18 C19 207.4 204.1
C21 N17 C15 C18 178.5 180.4
C7 C8 C15 H8 119.8 120.0
N9 C8 C15 C7 117.6 120.0
N9 C8 C15 H8 237.4 240.0
C15 C8 N9 HN9 215.7 275.0
O16 C15 C8 C7 285.6 259.9
O16 C15 C8 H8 165.8 139.9
O16 C15 N17 C18 184.8 180.0
H118 C18 N17 H218 240.0 237.6
C19 C18 N17 H118 240.0 241.1
C19 C18 N17 H218 120.0 118.7
N17 C18 C19 H119 84.2 205.1
N17 C18 C19 H219 204.2 81.3
C20 C19 C18 N17 324.2 323.3
N17 C18 H118 H218 122.7 122.4
N17 C18 H118 C19 245.5 244.5
C21 N17 C18 H118 148.9 142.7
C19 C18 H118 H218 237.3 237.9
H118 C18 C19 H119 324.2 86.2
H118 C18 C19 H219 84.2 322.4
C20 C19 C18 H118 204.2 204.4
N17 C18 H218 H118 237.3 237.7
N17 C18 H218 C19 114.5 115.4
C21 N17 C18 H218 268.8 265.1
C19 C18 H218 H118 122.7 122.2
H218 C18 C19 H119 204.2 323.9
H218 C18 C19 H219 324.2 200.2
C20 C19 C18 H218 84.2 82.1
N17 C18 C19 H118 120.0 118.9
N17 C18 C19 H218 240.0 241.2
C21 N17 C18 C19 28.8 23.8
H118 C18 C19 H218 120.0 122.2
H119 C19 C18 H219 240.0 123.8
C20 C19 C18 H119 240.0 118.2
C20 C19 C18 H219 120.0 242.0
C18 C19 C20 H120 150.7 277.0
C18 C19 C20 H220 270.7 153.7
C21 C20 C19 C18 30.7 35.3
H119 C19 C18 H118 324.2 86.2
H119 C19 C18 H218 204.2 323.9
C18 C19 H119 H219 122.2 236.3
C20 C19 H119 C18 115.7 247.6
C20 C19 H119 H219 237.8 123.9
H119 C19 C20 H120 30.7 35.2
H119 C19 C20 H220 150.7 271.9
C21 C20 C19 H119 270.7 153.5
H219 C19 C18 H118 84.2 322.4
H219 C19 C18 H218 324.2 200.2
C18 C19 H219 H119 237.8 123.9
C20 C19 H219 C18 244.3 112.2
C20 C19 H219 H119 122.2 236.1
H219 C19 C20 H120 270.7 159.1
H219 C19 C20 H220 30.7 35.8
C21 C20 C19 H219 150.7 277.4
N17 C18 C19 C20 324.2 323.3
C18 C19 C20 H119 120.0 241.8
C18 C19 C20 H219 240.0 117.9
H119 C19 C20 H219 120.0 236.1
H120 C20 C19 H220 240.0 123.3
C21 C20 C19 H120 240.0 118.3
C21 C20 C19 H220 120.0 241.7
C19 C20 C21 H21 109.8 97.3
C22 C21 C20 C19 229.1 218.4
H120 C20 C19 C18 150.7 277.0
H120 C20 C19 H119 30.7 35.2
H120 C20 C19 H219 270.7 159.1
C19 C20 H120 H220 121.5 236.7
C21 C20 H120 C19 117.0 246.5
C21 C20 H120 H220 238.5 123.3
H120 C20 C21 H21 349.8 215.6
C22 C21 C20 H120 109.1 336.7
H220 C20 C19 C18 270.7 153.7
H220 C20 C19 H119 150.7 271.9
H220 C20 C19 H219 30.7 35.8
C19 C20 H220 H120 238.5 123.2
C21 C20 H220 C19 243.0 113.5
C21 C20 H220 H120 121.5 236.7
H220 C20 C21 H21 229.8 338.9
C22 C21 C20 H220 349.1 100.0
C20 C21 N17 C18 350.2 359.2
C19 C20 C21 H120 120.0 241.7
C19 C20 C21 H220 240.0 118.4
H120 C20 C21 H220 120.0 236.7
C22 C21 C20 H21 119.3 121.2
C15 N17 C21 C18 181.3 179.7
H21 C21 N17 C18 227.8 239.7
H21 C21 C20 C19 109.8 97.3
H21 C21 C20 H120 349.8 215.6
H21 C21 C20 H220 229.8 338.9
C22 C21 H21 C20 238.3 238.9
C22 C21 N17 C18 108.7 118.6
C20 C21 C22 H21 237.2 238.9
O23 C22 C21 C20 81.3 118.5
O23 C22 C21 H21 204.1 239.6
N24 C22 C21 H21 22.6 59.7
H125 C25 N24 HN24 39.5 120.1
C26 C25 H125 H225 243.8 240.0
H225 C25 N24 HN24 159.6 240.0
C26 C25 H225 H125 116.2 120.0
C26 C25 N24 HN24 279.6 0.0
H125 C25 C26 H225 120.0 120.0
C31 C26 C25 H125 182.0 55.0
C31 C26 C25 H225 62.0 295.0
C27 C26 C31 H26 119.3 120.0
N29 C30 C31 C26 307.0 305.3
C26 C31 C30 H130 187.0 185.6
C26 C31 C30 H230 67.1 65.2
C30 C31 C26 H131 240.0 240.0
C30 C31 C26 H231 120.0 119.9
H131 C31 C26 H231 240.0 239.9
H26 C26 C25 H125 69.1 295.0
H26 C26 C25 H225 309.1 174.9
C27 C26 H26 C31 242.3 239.9
H26 C26 C31 C30 295.1 301.4
H26 C26 C31 H131 55.1 61.4
H26 C26 C31 H231 175.1 181.4
C27 C26 C25 H125 310.5 175.1
C27 C26 C25 H225 190.4 55.1
C31 C26 C27 H26 245.1 239.9
C27 C26 C31 C30 54.4 61.4
C27 C26 C31 H131 174.4 181.3
C27 C26 C31 H231 294.4 301.4
H127 C27 C26 C31 65.1 58.6
H127 C27 C26 H26 180.0 178.7
C28 C27 H127 H227 241.0 239.9
H227 C27 C26 C31 185.1 178.7
H227 C27 C26 H26 300.0 298.7
C28 C27 H227 H127 119.0 120.1
C28 C27 C26 C31 305.1 298.6
C28 C27 C26 H26 60.0 58.7
H127 C27 C28 H227 120.0 120.1
N29 C28 C27 H127 294.5 294.7
N29 C28 C27 H227 174.5 174.6
H128 C28 N29 H228 120.0 120.5
C28 N29 C30 C31 52.0 53.6
C28 N29 C30 H130 172.0 173.4
C28 N29 C30 H230 291.9 293.8
H128 C28 C27 H127 54.5 54.4
H128 C28 C27 H227 294.5 294.3
N29 C28 H128 H228 240.9 239.6
H128 C28 N29 C30 187.2 186.6
H228 C28 C27 H127 174.5 174.8
H228 C28 C27 H227 54.5 54.7
N29 C28 H228 H128 119.1 120.4
H228 C28 N29 C30 67.2 66.2
C26 C31 C30 N29 307.0 305.3
C30 N29 C28 H128 187.2 186.6
C30 N29 C28 H228 67.2 66.2
C31 C30 N29 H130 240.0 240.2
C31 C30 N29 H230 120.0 119.9
N29 C30 C31 H131 187.0 185.4
N29 C30 C31 H231 67.1 65.2
H130 C30 N29 H230 240.0 239.6
C30 C31 C26 H26 295.1 301.4
C26 C31 C30 H131 120.0 120.0
C26 C31 C30 H231 240.0 240.1
N29 C30 C31 H130 120.0 119.7
N29 C30 C31 H230 240.0 240.1
H130 C30 C31 H230 120.0 120.4
H131 C31 C30 H231 120.0 120.1
N29 C30 H130 C31 238.2 240.7
N29 C30 H130 H230 119.1 120.3
C31 C30 H130 H230 240.9 239.6
H130 C30 C31 H131 67.0 65.6
H130 C30 C31 H231 307.0 305.5
N29 C30 H230 C31 121.8 119.4
N29 C30 H230 H130 240.9 239.7
C31 C30 H230 H130 119.1 120.3
H230 C30 C31 H131 307.0 305.2
H230 C30 C31 H231 187.1 185.1
H131 C31 C26 H26 55.1 61.4
C26 C31 H131 C30 237.5 240.1
C26 C31 H131 H231 118.8 120.0
H131 C31 C30 H130 67.0 65.6
H131 C31 C30 H230 307.0 305.2
C30 C31 H131 H231 241.3 239.9
H231 C31 C26 H26 175.1 181.4
C26 C31 H231 C30 122.5 119.8
C26 C31 H231 H131 241.2 239.9
H231 C31 C30 H130 307.0 305.5
H231 C31 C30 H230 187.1 185.1
C30 C31 H231 H131 118.7 120.1
C32 N29 C28 H128 33.3 6.6
C32 N29 C28 H228 273.3 246.2
C32 N29 C30 H130 324.5 353.4
C32 N29 C30 H230 84.4 113.8
H133 N33 C32 H233 180.0 179.9
C32 N33 H133 H233 180.0 180.1
C32 N33 H233 H133 180.0 179.9
N34 C32 N33 H133 360.0 184.9
N34 C32 N33 H233 180.0 5.0