PDB Chemical Component 0B6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0B6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| F1 |
C5 |
1.379 |
1.399 |
| F2 |
C19 |
1.338 |
1.351 |
| C5 |
C4 |
1.520 |
1.507 |
| C3 |
C4 |
1.358 |
1.313 |
| C3 |
C2 |
1.527 |
1.504 |
| C4 |
O1 |
1.468 |
1.353 |
| C1 |
C2 |
1.526 |
1.530 |
| C19 |
C18 |
1.396 |
1.385 |
| C19 |
C7 |
1.508 |
1.385 |
| C18 |
C17 |
1.395 |
1.381 |
| C2 |
C7 |
1.530 |
1.507 |
| C2 |
N2 |
1.462 |
1.460 |
| C7 |
C8 |
1.404 |
1.381 |
| O1 |
C6 |
1.467 |
1.345 |
| C17 |
C9 |
1.400 |
1.388 |
| N2 |
C6 |
1.277 |
1.294 |
| C6 |
N1 |
1.334 |
1.374 |
| C8 |
C9 |
1.400 |
1.390 |
| C9 |
N3 |
1.357 |
1.399 |
| O2 |
C10 |
1.229 |
1.215 |
| N3 |
C10 |
1.347 |
1.348 |
| C10 |
C11 |
1.508 |
1.482 |
| C11 |
C15 |
1.400 |
1.393 |
| C11 |
N4 |
1.362 |
1.329 |
| C15 |
C14 |
1.396 |
1.384 |
| N4 |
C12 |
1.352 |
1.314 |
| C14 |
C13 |
1.411 |
1.399 |
| C12 |
C13 |
1.397 |
1.399 |
| C13 |
C16 |
1.291 |
1.432 |
| C16 |
N5 |
1.168 |
1.136 |
| N1 |
H1 |
1.000 |
0.970 |
| N1 |
H2 |
1.000 |
0.970 |
| C5 |
H3 |
1.100 |
1.090 |
| C5 |
H4 |
1.100 |
1.090 |
| C3 |
H5 |
1.080 |
1.081 |
| C1 |
H6 |
1.100 |
1.090 |
| C1 |
H7 |
1.100 |
1.089 |
| C1 |
H8 |
1.100 |
1.090 |
| C18 |
H9 |
1.080 |
1.080 |
| C17 |
H10 |
1.080 |
1.079 |
| C8 |
H11 |
1.080 |
1.079 |
| N3 |
H12 |
1.000 |
0.969 |
| C15 |
H13 |
1.080 |
1.079 |
| C14 |
H14 |
1.080 |
1.081 |
| C12 |
H15 |
1.080 |
1.080 |
Bond Angles for 0B6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| F1 |
C5 |
H3 |
109.1 |
109.5 |
| F1 |
C5 |
H4 |
109.1 |
109.5 |
| F2 |
C19 |
C18 |
118.0 |
119.9 |
| F2 |
C19 |
C7 |
121.7 |
119.9 |
| C7 |
C19 |
C18 |
120.3 |
120.1 |
| C19 |
C18 |
C17 |
120.0 |
120.0 |
| C19 |
C18 |
H9 |
120.0 |
120.0 |
| C19 |
C7 |
C8 |
116.0 |
120.0 |
| C18 |
C17 |
C9 |
121.1 |
120.0 |
| C17 |
C18 |
H9 |
120.0 |
120.0 |
| C18 |
C17 |
H10 |
119.5 |
120.0 |
| C2 |
C7 |
C8 |
120.7 |
119.9 |
| C2 |
N2 |
C6 |
125.6 |
121.9 |
| C7 |
C8 |
C9 |
122.3 |
119.9 |
| C7 |
C8 |
H11 |
118.9 |
120.0 |
| C17 |
C9 |
N3 |
123.2 |
120.1 |
| C9 |
C17 |
H10 |
119.4 |
120.0 |
| N2 |
C6 |
N1 |
119.1 |
119.0 |
| C6 |
N1 |
H1 |
120.0 |
120.0 |
| C6 |
N1 |
H2 |
120.0 |
120.0 |
| C8 |
C9 |
N3 |
116.5 |
120.0 |
| C9 |
N3 |
C10 |
128.9 |
120.0 |
| C9 |
N3 |
H12 |
115.6 |
120.0 |
| O2 |
C10 |
C11 |
118.4 |
120.0 |
| N3 |
C10 |
C11 |
116.8 |
120.0 |
| C10 |
N3 |
H12 |
115.5 |
120.0 |
| C10 |
C11 |
C15 |
121.0 |
119.6 |
| C10 |
C11 |
N4 |
118.7 |
119.5 |
| C15 |
C11 |
N4 |
120.3 |
120.9 |
| C11 |
C15 |
C14 |
118.1 |
119.2 |
| C11 |
C15 |
H13 |
120.9 |
120.4 |
| C11 |
N4 |
C12 |
122.5 |
121.8 |
| C15 |
C14 |
C13 |
120.7 |
118.4 |
| C14 |
C15 |
H13 |
121.0 |
120.4 |
| C15 |
C14 |
H14 |
119.7 |
120.8 |
| N4 |
C12 |
H15 |
120.2 |
119.6 |
| C14 |
C13 |
C16 |
120.3 |
120.5 |
| C13 |
C14 |
H14 |
119.7 |
120.8 |
| C12 |
C13 |
C16 |
120.7 |
120.4 |
| C13 |
C16 |
N5 |
176.0 |
180.0 |
| H1 |
N1 |
H2 |
120.0 |
120.0 |
| H3 |
C5 |
H4 |
109.5 |
109.4 |
| H6 |
C1 |
H7 |
109.5 |
109.5 |
| H6 |
C1 |
H8 |
109.5 |
109.5 |
| H7 |
C1 |
H8 |
109.4 |
109.4 |
Torsion Angles for 0B6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H3 |
C5 |
F1 |
H4 |
240.5 |
120.0 |
| C7 |
C19 |
F2 |
C18 |
181.4 |
180.4 |
| F2 |
C19 |
C18 |
C17 |
180.5 |
180.0 |
| F2 |
C19 |
C18 |
H9 |
0.5 |
0.1 |
| F2 |
C19 |
C7 |
C8 |
180.2 |
179.9 |
| C3 |
C2 |
C7 |
C8 |
103.4 |
121.0 |
| C1 |
C2 |
C7 |
C8 |
223.1 |
240.4 |
| F2 |
C19 |
C18 |
C7 |
181.3 |
180.4 |
| C18 |
C19 |
C7 |
C8 |
1.6 |
0.3 |
| C19 |
C18 |
C17 |
C9 |
359.4 |
0.1 |
| C17 |
C18 |
C19 |
H9 |
180.0 |
179.9 |
| C19 |
C18 |
C17 |
H10 |
179.4 |
180.0 |
| F2 |
C19 |
C7 |
C18 |
178.6 |
179.6 |
| C7 |
C19 |
C18 |
C17 |
359.2 |
359.7 |
| C7 |
C19 |
C18 |
H9 |
179.2 |
179.7 |
| C2 |
C7 |
C19 |
C8 |
177.4 |
180.1 |
| C19 |
C7 |
C8 |
C9 |
358.9 |
0.0 |
| C19 |
C7 |
C8 |
H11 |
178.9 |
180.0 |
| C19 |
C18 |
C17 |
H9 |
180.0 |
180.1 |
| C18 |
C17 |
C9 |
N3 |
179.6 |
180.0 |
| C9 |
C17 |
C18 |
H10 |
180.0 |
180.1 |
| C2 |
C7 |
C19 |
C18 |
179.1 |
180.3 |
| C19 |
C7 |
C2 |
C8 |
182.7 |
179.9 |
| C2 |
C7 |
C8 |
C9 |
181.4 |
180.0 |
| C2 |
C7 |
C8 |
H11 |
1.4 |
359.9 |
| N2 |
C2 |
C7 |
C8 |
343.1 |
0.1 |
| C2 |
N2 |
C6 |
N1 |
183.2 |
179.9 |
| C8 |
C7 |
C19 |
C18 |
1.6 |
0.3 |
| C7 |
C8 |
C9 |
N3 |
181.2 |
180.0 |
| O1 |
C6 |
N1 |
H1 |
0.0 |
180.0 |
| O1 |
C6 |
N1 |
H2 |
180.0 |
0.1 |
| C9 |
C17 |
C18 |
H9 |
179.4 |
180.0 |
| C18 |
C17 |
C9 |
H10 |
180.0 |
179.9 |
| C7 |
C8 |
C9 |
C17 |
359.7 |
359.7 |
| C8 |
C9 |
C17 |
N3 |
181.7 |
180.3 |
| C17 |
C9 |
N3 |
C10 |
18.6 |
33.3 |
| C17 |
C9 |
N3 |
H12 |
198.7 |
213.3 |
| N2 |
C6 |
N1 |
H1 |
180.0 |
359.9 |
| N2 |
C6 |
N1 |
H2 |
359.9 |
180.0 |
| H1 |
N1 |
C6 |
H2 |
180.0 |
179.9 |
| C7 |
C8 |
C9 |
H11 |
180.0 |
179.9 |
| C17 |
C9 |
C8 |
N3 |
178.4 |
179.7 |
| C8 |
C9 |
C17 |
H10 |
181.2 |
180.3 |
| C8 |
C9 |
N3 |
C10 |
197.0 |
213.0 |
| C8 |
C9 |
N3 |
H12 |
17.1 |
33.0 |
| N3 |
C9 |
C17 |
H10 |
359.6 |
0.1 |
| C9 |
N3 |
C10 |
C11 |
171.0 |
185.3 |
| C10 |
N3 |
C9 |
H12 |
180.0 |
180.0 |
| N3 |
C10 |
O2 |
C11 |
182.8 |
180.0 |
| O2 |
C10 |
N3 |
H12 |
168.1 |
185.3 |
| O2 |
C10 |
C11 |
C15 |
21.6 |
0.0 |
| O2 |
C10 |
C11 |
N4 |
202.6 |
179.7 |
| C9 |
N3 |
C10 |
H12 |
180.0 |
180.0 |
| O2 |
C10 |
N3 |
C11 |
177.2 |
180.0 |
| N3 |
C10 |
C11 |
C15 |
199.0 |
180.0 |
| N3 |
C10 |
C11 |
N4 |
20.0 |
359.7 |
| C11 |
C10 |
N3 |
H12 |
350.9 |
5.3 |
| C15 |
C11 |
C10 |
N4 |
179.0 |
180.3 |
| C10 |
C11 |
C15 |
C14 |
180.8 |
180.0 |
| C10 |
C11 |
C15 |
H13 |
0.8 |
359.9 |
| C10 |
C11 |
N4 |
C12 |
179.8 |
179.7 |
| C10 |
C11 |
C15 |
N4 |
181.0 |
179.7 |
| C15 |
C11 |
N4 |
C12 |
0.8 |
359.4 |
| C11 |
C15 |
C14 |
C13 |
358.6 |
360.0 |
| C14 |
C15 |
C11 |
H13 |
180.0 |
180.1 |
| C11 |
C15 |
C14 |
H14 |
178.5 |
179.9 |
| C10 |
C11 |
N4 |
C15 |
179.0 |
180.3 |
| N4 |
C11 |
C15 |
C14 |
359.8 |
0.3 |
| N4 |
C11 |
C15 |
H13 |
179.8 |
180.2 |
| C11 |
N4 |
C12 |
H15 |
180.2 |
180.3 |
| C14 |
C15 |
C11 |
N4 |
359.8 |
0.3 |
| C11 |
C15 |
C14 |
H13 |
180.0 |
179.9 |
| C15 |
C14 |
C13 |
C16 |
177.0 |
180.0 |
| C13 |
C14 |
C15 |
H14 |
180.0 |
180.0 |
| N4 |
C12 |
C13 |
C16 |
183.7 |
179.7 |
| C13 |
C14 |
C15 |
H13 |
178.6 |
180.1 |
| C15 |
C14 |
C13 |
H14 |
180.0 |
180.0 |
| C12 |
C13 |
C14 |
C16 |
185.5 |
180.0 |
| C14 |
C13 |
C16 |
N5 |
196.0 |
238.5 |
| C11 |
N4 |
C12 |
C13 |
0.2 |
0.6 |
| C14 |
C13 |
C12 |
C16 |
174.5 |
180.0 |
| C12 |
C13 |
C14 |
H14 |
182.5 |
180.0 |
| C12 |
C13 |
C16 |
N5 |
10.4 |
58.5 |
| C16 |
C13 |
C14 |
H14 |
357.0 |
0.1 |
| C6 |
N1 |
H1 |
H2 |
180.0 |
180.1 |
| C6 |
N1 |
H2 |
H1 |
180.0 |
179.9 |
| F1 |
C5 |
H3 |
H4 |
119.3 |
240.0 |
| F1 |
C5 |
H4 |
H3 |
240.7 |
120.0 |
| H7 |
C1 |
H6 |
H8 |
120.0 |
120.0 |
| H6 |
C1 |
H7 |
H8 |
240.0 |
239.9 |
| H6 |
C1 |
H8 |
H7 |
120.0 |
120.1 |
| C19 |
C18 |
H9 |
C17 |
180.0 |
179.9 |
| H9 |
C18 |
C17 |
C9 |
179.4 |
180.0 |
| H9 |
C18 |
C17 |
H10 |
359.4 |
359.9 |
| C18 |
C17 |
H10 |
C9 |
180.0 |
180.1 |
| H10 |
C17 |
C18 |
H9 |
359.4 |
359.9 |
| H10 |
C17 |
C9 |
N3 |
359.6 |
0.1 |
| C7 |
C8 |
H11 |
C9 |
180.0 |
180.1 |
| H11 |
C8 |
C9 |
N3 |
1.3 |
0.1 |
| C9 |
N3 |
H12 |
C10 |
180.0 |
180.0 |
| H12 |
N3 |
C10 |
C11 |
350.9 |
5.3 |
| H13 |
C15 |
C11 |
N4 |
179.8 |
180.2 |
| C11 |
C15 |
H13 |
C14 |
180.0 |
180.1 |
| H13 |
C15 |
C14 |
C13 |
178.6 |
180.1 |
| H13 |
C15 |
C14 |
H14 |
358.5 |
0.0 |
| C15 |
C14 |
H14 |
C13 |
180.0 |
180.0 |
| H14 |
C14 |
C15 |
H13 |
358.5 |
0.0 |
| H14 |
C14 |
C13 |
C16 |
357.0 |
0.1 |
| H15 |
C12 |
C13 |
C16 |
3.7 |
360.0 |