Atom Nomenclature for 0B6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0B6

Atom Name (V3) Atom Name (V2)
F2 F1
C19 C1
C7 C2
C2 C3
N2 N1
C6 C4
N1 N2
O1 O1
C4 C5
C5 C6
F1 F2
C3 C7
C1 C8
C18 C9
C17 C10
C9 C11
C8 C12
N3 N3
C10 C13
O2 O2
C11 C14
C15 C15
C14 C16
C13 C17
C12 C18
N4 N4
C16 C19
N5 N5
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15