PDB Chemical Component 0B5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0B5
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
F1 |
C4 |
1.326 |
1.399 |
C5 |
C4 |
1.532 |
1.530 |
F4 |
C18 |
1.334 |
1.352 |
C4 |
F2 |
1.328 |
1.399 |
C4 |
C3 |
1.533 |
1.530 |
F |
C2 |
1.370 |
1.398 |
C2 |
C3 |
1.531 |
1.536 |
C2 |
C1 |
1.528 |
1.532 |
C3 |
O |
1.433 |
1.431 |
C18 |
C17 |
1.389 |
1.384 |
C18 |
C7 |
1.501 |
1.385 |
C |
C1 |
1.518 |
1.530 |
C17 |
C16 |
1.396 |
1.381 |
C1 |
C7 |
1.526 |
1.507 |
C1 |
N1 |
1.472 |
1.461 |
C7 |
C8 |
1.393 |
1.381 |
O |
C6 |
1.445 |
1.346 |
C16 |
C9 |
1.400 |
1.389 |
N1 |
C6 |
1.281 |
1.289 |
C6 |
N |
1.336 |
1.373 |
C8 |
C9 |
1.392 |
1.389 |
C9 |
N2 |
1.366 |
1.399 |
N2 |
C10 |
1.338 |
1.348 |
O2 |
C10 |
1.214 |
1.215 |
C10 |
C11 |
1.503 |
1.479 |
C11 |
C15 |
1.404 |
1.394 |
C11 |
N3 |
1.364 |
1.333 |
C15 |
N4 |
1.352 |
1.321 |
N3 |
C12 |
1.344 |
1.315 |
N4 |
C13 |
1.377 |
1.325 |
C12 |
C13 |
1.393 |
1.396 |
C13 |
O1 |
1.363 |
1.356 |
O1 |
C14 |
1.431 |
1.429 |
C14 |
F3 |
1.378 |
1.399 |
N |
H1 |
1.000 |
0.971 |
N |
H2 |
1.000 |
0.970 |
C3 |
H3 |
1.100 |
1.090 |
C5 |
H4 |
1.099 |
1.090 |
C5 |
H5 |
1.100 |
1.090 |
C5 |
H6 |
1.100 |
1.090 |
C2 |
H7 |
1.100 |
1.090 |
C |
H8 |
1.100 |
1.089 |
C |
H9 |
1.100 |
1.090 |
C |
H10 |
1.100 |
1.091 |
C17 |
H11 |
1.080 |
1.080 |
C16 |
H12 |
1.080 |
1.080 |
C8 |
H13 |
1.080 |
1.080 |
N2 |
H14 |
1.000 |
0.970 |
C15 |
H15 |
1.080 |
1.080 |
C12 |
H16 |
1.080 |
1.080 |
C14 |
H17 |
1.100 |
1.090 |
C14 |
H18 |
1.100 |
1.090 |
Bond Angles for 0B5
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
F1 |
C4 |
F2 |
109.9 |
109.4 |
F4 |
C18 |
C17 |
119.2 |
119.9 |
F4 |
C18 |
C7 |
120.7 |
119.9 |
C4 |
C3 |
H3 |
104.5 |
109.8 |
F |
C2 |
H7 |
111.3 |
109.8 |
C2 |
C3 |
H3 |
104.6 |
109.8 |
C7 |
C18 |
C17 |
120.2 |
120.1 |
C18 |
C17 |
C16 |
119.7 |
120.0 |
C18 |
C17 |
H11 |
120.2 |
120.0 |
C18 |
C7 |
C8 |
116.3 |
120.0 |
C17 |
C16 |
C9 |
121.5 |
120.0 |
C16 |
C17 |
H11 |
120.1 |
119.9 |
C17 |
C16 |
H12 |
119.3 |
120.0 |
C1 |
C7 |
C8 |
120.8 |
120.0 |
C1 |
N1 |
C6 |
124.5 |
123.3 |
C7 |
C8 |
C9 |
122.7 |
120.0 |
C7 |
C8 |
H13 |
118.6 |
120.0 |
C16 |
C9 |
N2 |
124.3 |
120.1 |
C9 |
C16 |
H12 |
119.2 |
120.0 |
N1 |
C6 |
N |
122.5 |
118.1 |
C6 |
N |
H1 |
120.0 |
120.0 |
C6 |
N |
H2 |
120.0 |
120.0 |
C8 |
C9 |
N2 |
116.0 |
120.1 |
C9 |
N2 |
C10 |
129.5 |
120.0 |
C9 |
N2 |
H14 |
115.2 |
119.9 |
N2 |
C10 |
C11 |
117.6 |
120.0 |
C10 |
N2 |
H14 |
115.2 |
120.0 |
O2 |
C10 |
C11 |
118.5 |
120.0 |
C10 |
C11 |
C15 |
121.3 |
120.0 |
C10 |
C11 |
N3 |
118.6 |
120.0 |
C15 |
C11 |
N3 |
120.1 |
119.9 |
C11 |
C15 |
N4 |
118.5 |
119.9 |
C11 |
C15 |
H15 |
120.7 |
120.0 |
C11 |
N3 |
C12 |
121.4 |
120.0 |
C15 |
N4 |
C13 |
120.9 |
120.0 |
N4 |
C15 |
H15 |
120.8 |
120.1 |
N3 |
C12 |
H16 |
120.5 |
120.0 |
N4 |
C13 |
O1 |
122.4 |
120.0 |
C12 |
C13 |
O1 |
117.6 |
120.0 |
C13 |
O1 |
C14 |
122.4 |
116.9 |
O1 |
C14 |
F3 |
109.6 |
109.5 |
O1 |
C14 |
H17 |
109.5 |
109.4 |
O1 |
C14 |
H18 |
109.4 |
109.5 |
F3 |
C14 |
H17 |
109.4 |
109.5 |
F3 |
C14 |
H18 |
109.4 |
109.5 |
H1 |
N |
H2 |
120.0 |
119.9 |
H4 |
C5 |
H5 |
109.5 |
109.5 |
H4 |
C5 |
H6 |
109.4 |
109.5 |
H5 |
C5 |
H6 |
109.5 |
109.5 |
H8 |
C |
H9 |
109.4 |
109.5 |
H8 |
C |
H10 |
109.5 |
109.5 |
H9 |
C |
H10 |
109.5 |
109.4 |
H17 |
C14 |
H18 |
109.5 |
109.5 |
Torsion Angles for 0B5
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
F1 |
C4 |
C3 |
H3 |
65.0 |
54.3 |
C5 |
C4 |
C3 |
H3 |
188.8 |
294.3 |
C7 |
C18 |
F4 |
C17 |
179.8 |
180.3 |
F4 |
C18 |
C17 |
C16 |
180.1 |
180.0 |
F4 |
C18 |
C17 |
H11 |
0.1 |
0.0 |
F4 |
C18 |
C7 |
C8 |
180.9 |
180.0 |
F2 |
C4 |
C3 |
H3 |
306.7 |
174.2 |
C2 |
C3 |
C4 |
H3 |
244.3 |
239.2 |
F |
C2 |
C3 |
H3 |
185.3 |
178.2 |
C4 |
C3 |
C2 |
H3 |
115.7 |
120.8 |
C2 |
C1 |
C7 |
C8 |
112.6 |
120.3 |
F4 |
C18 |
C17 |
C7 |
179.8 |
180.3 |
C17 |
C18 |
C7 |
C8 |
0.7 |
0.3 |
C18 |
C17 |
C16 |
C9 |
358.4 |
0.0 |
C16 |
C17 |
C18 |
H11 |
180.0 |
180.0 |
C18 |
C17 |
C16 |
H12 |
178.4 |
180.0 |
F4 |
C18 |
C7 |
C17 |
180.2 |
179.7 |
C7 |
C18 |
C17 |
C16 |
0.3 |
359.7 |
C7 |
C18 |
C17 |
H11 |
180.3 |
179.7 |
C1 |
C7 |
C18 |
C8 |
178.1 |
180.0 |
C18 |
C7 |
C8 |
C9 |
359.6 |
360.0 |
C18 |
C7 |
C8 |
H13 |
179.6 |
180.0 |
C |
C1 |
C7 |
C8 |
232.5 |
240.2 |
C18 |
C17 |
C16 |
H11 |
180.0 |
180.0 |
C17 |
C16 |
C9 |
N2 |
180.1 |
180.0 |
C9 |
C16 |
C17 |
H12 |
180.0 |
180.0 |
C1 |
C7 |
C18 |
C17 |
178.8 |
180.3 |
C18 |
C7 |
C1 |
C8 |
182.0 |
180.0 |
C1 |
C7 |
C8 |
C9 |
181.5 |
180.0 |
C1 |
C7 |
C8 |
H13 |
1.4 |
360.0 |
N1 |
C1 |
C7 |
C8 |
353.3 |
0.0 |
C1 |
N1 |
C6 |
N |
176.8 |
180.6 |
C8 |
C7 |
C18 |
C17 |
0.7 |
0.3 |
C7 |
C8 |
C9 |
N2 |
180.7 |
180.0 |
O |
C6 |
N |
H1 |
0.0 |
180.0 |
O |
C6 |
N |
H2 |
180.0 |
360.0 |
C9 |
C16 |
C17 |
H11 |
178.4 |
180.0 |
C17 |
C16 |
C9 |
H12 |
180.0 |
180.0 |
C7 |
C8 |
C9 |
C16 |
359.1 |
359.8 |
C8 |
C9 |
C16 |
N2 |
181.8 |
180.2 |
C16 |
C9 |
N2 |
C10 |
7.3 |
33.3 |
C16 |
C9 |
N2 |
H14 |
187.3 |
213.3 |
N1 |
C6 |
N |
H1 |
179.3 |
0.0 |
N1 |
C6 |
N |
H2 |
359.3 |
180.0 |
H1 |
N |
C6 |
H2 |
180.0 |
180.1 |
C7 |
C8 |
C9 |
H13 |
180.0 |
180.0 |
C16 |
C9 |
C8 |
N2 |
178.3 |
179.8 |
C8 |
C9 |
C16 |
H12 |
182.0 |
180.3 |
C8 |
C9 |
N2 |
C10 |
185.6 |
213.0 |
C8 |
C9 |
N2 |
H14 |
5.5 |
33.1 |
N2 |
C9 |
C16 |
H12 |
0.2 |
0.0 |
C9 |
N2 |
C10 |
C11 |
171.3 |
185.3 |
C10 |
N2 |
C9 |
H14 |
180.0 |
180.0 |
C9 |
N2 |
C10 |
H14 |
180.0 |
180.0 |
O2 |
C10 |
N2 |
C11 |
180.2 |
180.0 |
N2 |
C10 |
C11 |
C15 |
194.8 |
180.0 |
N2 |
C10 |
C11 |
N3 |
14.8 |
359.7 |
N2 |
C10 |
O2 |
C11 |
179.8 |
180.0 |
O2 |
C10 |
N2 |
H14 |
171.5 |
185.3 |
O2 |
C10 |
C11 |
C15 |
14.7 |
0.0 |
O2 |
C10 |
C11 |
N3 |
194.6 |
179.7 |
C11 |
C10 |
N2 |
H14 |
351.3 |
5.3 |
C15 |
C11 |
C10 |
N3 |
180.1 |
180.3 |
C10 |
C11 |
C15 |
N4 |
180.2 |
180.0 |
C10 |
C11 |
C15 |
H15 |
0.2 |
360.0 |
C10 |
C11 |
N3 |
C12 |
180.8 |
179.7 |
C10 |
C11 |
C15 |
N3 |
179.9 |
179.7 |
C15 |
C11 |
N3 |
C12 |
0.7 |
359.4 |
C11 |
C15 |
N4 |
C13 |
358.9 |
360.0 |
N4 |
C15 |
C11 |
H15 |
180.0 |
180.0 |
C10 |
C11 |
N3 |
C15 |
180.1 |
180.3 |
N3 |
C11 |
C15 |
N4 |
0.3 |
0.3 |
N3 |
C11 |
C15 |
H15 |
180.3 |
180.3 |
C11 |
N3 |
C12 |
H16 |
179.2 |
180.3 |
N4 |
C15 |
C11 |
N3 |
0.3 |
0.3 |
C11 |
C15 |
N4 |
H15 |
180.0 |
180.0 |
C15 |
N4 |
C13 |
O1 |
180.5 |
180.0 |
N3 |
C12 |
C13 |
O1 |
180.5 |
179.8 |
C13 |
N4 |
C15 |
H15 |
179.0 |
180.0 |
C12 |
C13 |
N4 |
O1 |
180.4 |
180.0 |
N4 |
C13 |
O1 |
C14 |
353.0 |
360.0 |
C11 |
N3 |
C12 |
C13 |
359.2 |
0.5 |
N4 |
C13 |
C12 |
O1 |
179.6 |
180.0 |
C12 |
C13 |
O1 |
C14 |
172.6 |
180.0 |
C13 |
O1 |
C14 |
F3 |
292.1 |
75.0 |
C13 |
O1 |
C14 |
H17 |
52.1 |
195.0 |
C13 |
O1 |
C14 |
H18 |
172.1 |
315.0 |
F3 |
C14 |
O1 |
H17 |
240.0 |
240.0 |
F3 |
C14 |
O1 |
H18 |
120.0 |
120.0 |
H17 |
C14 |
O1 |
H18 |
240.0 |
240.0 |
O1 |
C14 |
F3 |
H17 |
120.0 |
120.0 |
O1 |
C14 |
F3 |
H18 |
240.0 |
239.9 |
H17 |
C14 |
F3 |
H18 |
119.9 |
120.0 |
C6 |
N |
H1 |
H2 |
180.0 |
179.9 |
C6 |
N |
H2 |
H1 |
180.0 |
180.1 |
H5 |
C5 |
H4 |
H6 |
120.0 |
120.0 |
H4 |
C5 |
H5 |
H6 |
240.0 |
240.0 |
H4 |
C5 |
H6 |
H5 |
120.0 |
120.0 |
H7 |
C2 |
C3 |
H3 |
306.8 |
298.9 |
H9 |
C |
H8 |
H10 |
120.0 |
120.0 |
H8 |
C |
H9 |
H10 |
240.0 |
240.0 |
H8 |
C |
H10 |
H9 |
120.0 |
120.0 |
C18 |
C17 |
H11 |
C16 |
180.0 |
180.0 |
H11 |
C17 |
C16 |
C9 |
178.4 |
180.0 |
H11 |
C17 |
C16 |
H12 |
358.4 |
0.0 |
C17 |
C16 |
H12 |
C9 |
180.0 |
180.0 |
H12 |
C16 |
C17 |
H11 |
358.4 |
0.0 |
H12 |
C16 |
C9 |
N2 |
0.2 |
0.0 |
C7 |
C8 |
H13 |
C9 |
180.0 |
180.0 |
H13 |
C8 |
C9 |
N2 |
0.8 |
360.0 |
C9 |
N2 |
H14 |
C10 |
180.0 |
180.0 |
H14 |
N2 |
C10 |
C11 |
351.3 |
5.3 |
H15 |
C15 |
C11 |
N3 |
180.3 |
180.3 |
C11 |
C15 |
H15 |
N4 |
180.0 |
180.0 |
H15 |
C15 |
N4 |
C13 |
179.0 |
180.0 |
H16 |
C12 |
C13 |
O1 |
0.5 |
0.0 |
O1 |
C14 |
H17 |
F3 |
239.9 |
240.0 |
O1 |
C14 |
H17 |
H18 |
119.9 |
120.0 |
F3 |
C14 |
H17 |
H18 |
240.1 |
240.0 |
O1 |
C14 |
H18 |
F3 |
120.1 |
120.0 |
O1 |
C14 |
H18 |
H17 |
240.0 |
240.0 |
F3 |
C14 |
H18 |
H17 |
119.9 |
120.0 |