PDB Chemical Component 0AP

Ideal Model

Chemical Description

Name 2'-deoxycytidine 3',5'-bis(dihydrogen phosphate)
Formula C9 H15 N3 O10 P2
Formal charge 0
Molecular weight 387.177 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 39
Chiral atom count 3
Chiral atoms C4' C3' C1'
Bond count 40
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxycytidine 3',5'-bis(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3-phosphonooxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O[P](O)(O)=O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2C[CH](O[P](O)(O)=O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)OP(=O)(O)O
InChI descriptor InChI=1S/C9H15N3O10P2/c10-7-1-2-12(9(13)11-7)8-3-5(22-24(17,18)19)6(21-8)4-20-23(14,15)16/h1-2,5-6,8H,3-4H2,(H2,10,11,13)(H2,14,15,16)(H2,17,18,19)/t5-,6+,8+/m0/s1
InChIKey descriptor PIILJQRMNSOCFD-SHYZEUOFSA-N

Status Information

Last modified 2011-06-04
Created 2007-11-11
Release status REL
Model PDB code 1FLO
Processing site RCSB