Atom Nomenclature for 0AH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 0AH

Atom Name (V3) Atom Name (V2)
N N
CA CA
C C
O O
CB CB
C1 C1
O1 O1
O2 O2
C2 C2
BR2 BR2
OXT OXT
HN1 1HN
HN2 2HN
HA HA
HBC1 1HBC
HBC2 2HBC
HXT HXT
H2C1 1H2C
H2C2 2H2C