PDB Chemical Component 0AF
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0AF
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.440 |
1.470 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
C |
1.498 |
1.508 |
| CA |
CB |
1.530 |
1.530 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.222 |
1.208 |
| C |
OXT |
1.315 |
1.343 |
| CB |
CG |
1.500 |
1.507 |
| CB |
HBC1 |
1.100 |
1.090 |
| CB |
HBC2 |
1.101 |
1.090 |
| CG |
CD1 |
1.341 |
1.342 |
| CG |
CD2 |
1.478 |
1.465 |
| CD1 |
NE1 |
1.357 |
1.368 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CD2 |
CE2 |
1.400 |
1.405 |
| CD2 |
CE3 |
1.417 |
1.398 |
| NE1 |
CE2 |
1.356 |
1.377 |
| NE1 |
HE1 |
1.000 |
0.970 |
| CE2 |
CZ2 |
1.394 |
1.396 |
| CE3 |
CZ3 |
1.369 |
1.365 |
| CE3 |
HE3 |
1.080 |
1.081 |
| CZ2 |
O1 |
1.201 |
1.359 |
| CZ2 |
CH2 |
1.403 |
1.382 |
| O1 |
H1 |
0.950 |
0.967 |
| CZ3 |
CH2 |
1.380 |
1.388 |
| CZ3 |
HZ3 |
1.079 |
1.080 |
| CH2 |
HH2 |
1.080 |
1.081 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 0AF
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
110.9 |
| N |
CA |
C |
103.1 |
109.5 |
| N |
CA |
CB |
117.6 |
109.5 |
| N |
CA |
HA |
110.5 |
109.4 |
| H |
N |
H2 |
109.4 |
111.0 |
| C |
CA |
CB |
114.7 |
109.5 |
| C |
CA |
HA |
113.6 |
109.5 |
| CA |
C |
O |
119.3 |
120.0 |
| CA |
C |
OXT |
118.6 |
120.0 |
| CB |
CA |
HA |
97.7 |
109.5 |
| CA |
CB |
CG |
114.7 |
109.5 |
| CA |
CB |
HBC1 |
107.8 |
109.5 |
| CA |
CB |
HBC2 |
106.6 |
109.4 |
| O |
C |
OXT |
121.7 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CG |
CB |
HBC1 |
107.8 |
109.5 |
| CG |
CB |
HBC2 |
106.6 |
109.5 |
| CB |
CG |
CD1 |
123.6 |
126.5 |
| CB |
CG |
CD2 |
130.0 |
126.4 |
| HBC1 |
CB |
HBC2 |
113.6 |
109.5 |
| CD1 |
CG |
CD2 |
106.4 |
107.0 |
| CG |
CD1 |
NE1 |
109.7 |
109.9 |
| CG |
CD1 |
HD1 |
125.2 |
125.0 |
| CG |
CD2 |
CE2 |
105.6 |
106.0 |
| CG |
CD2 |
CE3 |
137.3 |
134.0 |
| NE1 |
CD1 |
HD1 |
125.1 |
125.1 |
| CD1 |
NE1 |
CE2 |
110.9 |
109.8 |
| CD1 |
NE1 |
HE1 |
124.6 |
125.1 |
| CE2 |
CD2 |
CE3 |
117.1 |
119.9 |
| CD2 |
CE2 |
NE1 |
107.3 |
107.2 |
| CD2 |
CE2 |
CZ2 |
122.5 |
119.3 |
| CD2 |
CE3 |
CZ3 |
120.2 |
119.9 |
| CD2 |
CE3 |
HE3 |
119.9 |
120.0 |
| CE2 |
NE1 |
HE1 |
124.5 |
125.1 |
| NE1 |
CE2 |
CZ2 |
130.2 |
133.5 |
| CE2 |
CZ2 |
O1 |
119.1 |
120.2 |
| CE2 |
CZ2 |
CH2 |
118.8 |
119.6 |
| CZ3 |
CE3 |
HE3 |
119.9 |
120.1 |
| CE3 |
CZ3 |
CH2 |
122.4 |
120.6 |
| CE3 |
CZ3 |
HZ3 |
118.8 |
119.7 |
| O1 |
CZ2 |
CH2 |
122.1 |
120.2 |
| CZ2 |
O1 |
H1 |
109.5 |
114.0 |
| CZ2 |
CH2 |
CZ3 |
119.0 |
120.6 |
| CZ2 |
CH2 |
HH2 |
120.5 |
119.6 |
| CH2 |
CZ3 |
HZ3 |
118.8 |
119.7 |
| CZ3 |
CH2 |
HH2 |
120.5 |
119.7 |
Torsion Angles for 0AF
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| C |
CA |
N |
CB |
127.3 |
120.0 |
| C |
CA |
N |
HA |
238.2 |
240.0 |
| N |
CA |
C |
O |
339.2 |
340.0 |
| N |
CA |
C |
OXT |
152.0 |
160.0 |
| CB |
CA |
N |
HA |
110.9 |
120.0 |
| N |
CA |
CB |
CG |
51.5 |
295.0 |
| N |
CA |
CB |
HBC1 |
171.6 |
55.0 |
| N |
CA |
CB |
HBC2 |
293.9 |
175.0 |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| H |
N |
CA |
C |
349.1 |
296.1 |
| H |
N |
CA |
CB |
221.9 |
176.1 |
| H |
N |
CA |
HA |
110.9 |
56.0 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H2 |
N |
CA |
C |
109.1 |
60.0 |
| H2 |
N |
CA |
CB |
341.8 |
300.0 |
| H2 |
N |
CA |
HA |
230.9 |
180.0 |
| C |
CA |
N |
H |
349.1 |
296.1 |
| C |
CA |
N |
H2 |
109.1 |
60.0 |
| N |
CA |
C |
CB |
230.9 |
240.0 |
| N |
CA |
C |
HA |
119.7 |
120.0 |
| CB |
CA |
C |
HA |
248.7 |
239.9 |
| C |
CA |
CB |
CG |
290.1 |
175.0 |
| C |
CA |
CB |
HBC1 |
50.1 |
295.0 |
| C |
CA |
CB |
HBC2 |
172.4 |
55.0 |
| O |
C |
CA |
OXT |
187.2 |
180.0 |
| CA |
C |
OXT |
HXT |
187.3 |
180.0 |
| CB |
CA |
N |
H |
221.9 |
176.1 |
| CB |
CA |
N |
H2 |
341.8 |
300.0 |
| N |
CA |
CB |
C |
121.4 |
120.0 |
| N |
CA |
CB |
HA |
242.0 |
240.0 |
| C |
CA |
CB |
HA |
120.5 |
120.0 |
| CB |
CA |
C |
O |
108.3 |
100.0 |
| CB |
CA |
C |
OXT |
281.1 |
280.0 |
| CG |
CB |
CA |
HBC1 |
240.0 |
240.0 |
| CG |
CB |
CA |
HBC2 |
117.7 |
120.0 |
| CA |
CB |
CG |
CD1 |
87.2 |
265.1 |
| CA |
CB |
CG |
CD2 |
267.2 |
84.7 |
| HBC1 |
CB |
CA |
HBC2 |
237.7 |
240.0 |
| HA |
CA |
N |
H |
110.9 |
56.0 |
| HA |
CA |
N |
H2 |
230.9 |
180.0 |
| N |
CA |
HA |
C |
244.7 |
240.0 |
| N |
CA |
HA |
CB |
123.3 |
120.0 |
| C |
CA |
HA |
CB |
238.7 |
240.0 |
| HA |
CA |
C |
O |
219.6 |
220.0 |
| HA |
CA |
C |
OXT |
32.4 |
40.0 |
| HA |
CA |
CB |
CG |
169.6 |
55.0 |
| HA |
CA |
CB |
HBC1 |
289.6 |
175.0 |
| HA |
CA |
CB |
HBC2 |
51.9 |
295.0 |
| O |
C |
CA |
CB |
108.3 |
100.0 |
| O |
C |
CA |
HA |
219.6 |
220.0 |
| CA |
C |
O |
OXT |
172.6 |
180.0 |
| O |
C |
OXT |
HXT |
360.0 |
0.1 |
| OXT |
C |
CA |
CB |
281.1 |
280.0 |
| OXT |
C |
CA |
HA |
32.4 |
40.0 |
| CA |
C |
OXT |
O |
187.4 |
180.0 |
| CG |
CB |
CA |
HA |
169.6 |
55.0 |
| CA |
CB |
CG |
HBC1 |
120.0 |
120.1 |
| CA |
CB |
CG |
HBC2 |
242.3 |
240.1 |
| HBC1 |
CB |
CG |
HBC2 |
122.3 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
180.1 |
180.4 |
| CB |
CG |
CD1 |
NE1 |
179.7 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
359.7 |
359.9 |
| CB |
CG |
CD2 |
CE2 |
179.9 |
180.0 |
| CB |
CG |
CD2 |
CE3 |
2.7 |
0.1 |
| HBC1 |
CB |
CA |
HA |
289.6 |
175.0 |
| CA |
CB |
HBC1 |
CG |
235.7 |
239.9 |
| CA |
CB |
HBC1 |
HBC2 |
117.8 |
120.0 |
| CG |
CB |
HBC1 |
HBC2 |
242.2 |
240.0 |
| HBC1 |
CB |
CG |
CD1 |
327.2 |
145.0 |
| HBC1 |
CB |
CG |
CD2 |
147.1 |
324.6 |
| HBC2 |
CB |
CA |
HA |
51.9 |
295.0 |
| CA |
CB |
HBC2 |
CG |
122.9 |
120.0 |
| CA |
CB |
HBC2 |
HBC1 |
241.5 |
240.0 |
| CG |
CB |
HBC2 |
HBC1 |
118.5 |
120.0 |
| HBC2 |
CB |
CG |
CD1 |
204.9 |
25.0 |
| HBC2 |
CB |
CG |
CD2 |
24.8 |
204.7 |
| CD1 |
CG |
CB |
HBC1 |
327.2 |
145.0 |
| CD1 |
CG |
CB |
HBC2 |
204.9 |
25.0 |
| CB |
CG |
CD1 |
CD2 |
179.9 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
359.9 |
359.7 |
| CD1 |
CG |
CD2 |
CE3 |
182.6 |
179.8 |
| NE1 |
CD1 |
CG |
HD1 |
180.0 |
180.1 |
| CG |
CD1 |
NE1 |
CE2 |
0.6 |
359.8 |
| CG |
CD1 |
NE1 |
HE1 |
180.6 |
180.0 |
| CD2 |
CG |
CB |
HBC1 |
147.1 |
324.6 |
| CD2 |
CG |
CB |
HBC2 |
24.8 |
204.7 |
| CB |
CG |
CD2 |
CD1 |
180.1 |
180.3 |
| CD2 |
CG |
CD1 |
NE1 |
359.7 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
179.7 |
180.2 |
| CE2 |
CD2 |
CG |
CE3 |
177.3 |
179.9 |
| CG |
CD2 |
CE2 |
NE1 |
0.5 |
0.2 |
| CG |
CD2 |
CE2 |
CZ2 |
180.5 |
180.0 |
| CG |
CD2 |
CE3 |
CZ3 |
181.2 |
179.9 |
| CG |
CD2 |
CE3 |
HE3 |
1.2 |
359.9 |
| NE1 |
CD1 |
CG |
CD2 |
359.7 |
0.3 |
| CG |
CD1 |
NE1 |
HD1 |
180.0 |
179.9 |
| CD2 |
CE2 |
NE1 |
CD1 |
359.3 |
360.0 |
| CE2 |
NE1 |
CD1 |
HE1 |
180.0 |
179.9 |
| CD1 |
NE1 |
CE2 |
CZ2 |
179.3 |
180.2 |
| HD1 |
CD1 |
CG |
CD2 |
179.7 |
180.2 |
| CG |
CD1 |
HD1 |
NE1 |
180.0 |
180.1 |
| HD1 |
CD1 |
NE1 |
CE2 |
180.6 |
179.9 |
| HD1 |
CD1 |
NE1 |
HE1 |
0.7 |
0.0 |
| CG |
CD2 |
CE2 |
CE3 |
182.1 |
180.1 |
| CD1 |
NE1 |
CE2 |
CD2 |
359.3 |
360.0 |
| CE2 |
CD2 |
CE3 |
CZ3 |
4.1 |
0.0 |
| CE2 |
CD2 |
CE3 |
HE3 |
184.1 |
180.0 |
| CD2 |
CE2 |
NE1 |
HE1 |
179.3 |
179.8 |
| NE1 |
CE2 |
CD2 |
CZ2 |
180.0 |
180.2 |
| CD2 |
CE2 |
CZ2 |
O1 |
180.2 |
180.1 |
| CD2 |
CE2 |
CZ2 |
CH2 |
359.4 |
0.0 |
| CG |
CD2 |
CE3 |
CE2 |
177.0 |
179.9 |
| CE3 |
CD2 |
CE2 |
NE1 |
178.4 |
180.1 |
| CE3 |
CD2 |
CE2 |
CZ2 |
358.4 |
359.9 |
| CZ3 |
CE3 |
CD2 |
HE3 |
180.0 |
180.0 |
| CD2 |
CE3 |
CZ3 |
CH2 |
355.4 |
0.1 |
| CD2 |
CE3 |
CZ3 |
HZ3 |
175.4 |
180.0 |
| CE2 |
NE1 |
CD1 |
HD1 |
180.6 |
179.9 |
| CD1 |
NE1 |
CE2 |
HE1 |
180.0 |
180.1 |
| NE1 |
CE2 |
CD2 |
CE3 |
178.4 |
180.1 |
| CD2 |
CE2 |
NE1 |
CZ2 |
180.0 |
179.8 |
| NE1 |
CE2 |
CZ2 |
O1 |
0.2 |
359.8 |
| NE1 |
CE2 |
CZ2 |
CH2 |
179.3 |
179.8 |
| HE1 |
NE1 |
CD1 |
HD1 |
0.7 |
0.0 |
| CD1 |
NE1 |
HE1 |
CE2 |
180.0 |
179.8 |
| HE1 |
NE1 |
CE2 |
CZ2 |
359.3 |
0.1 |
| CZ2 |
CE2 |
CD2 |
CE3 |
358.4 |
359.9 |
| CD2 |
CE2 |
CZ2 |
NE1 |
180.0 |
180.2 |
| CZ2 |
CE2 |
NE1 |
HE1 |
359.3 |
0.1 |
| O1 |
CZ2 |
CE2 |
CH2 |
180.8 |
180.0 |
| CE2 |
CZ2 |
O1 |
H1 |
289.2 |
90.0 |
| CE2 |
CZ2 |
CH2 |
CZ3 |
0.4 |
0.1 |
| CE2 |
CZ2 |
CH2 |
HH2 |
180.5 |
180.0 |
| CD2 |
CE3 |
CZ3 |
HE3 |
180.0 |
180.0 |
| CZ2 |
CH2 |
CZ3 |
CE3 |
2.2 |
359.9 |
| CH2 |
CZ3 |
CE3 |
HZ3 |
180.0 |
180.1 |
| CE3 |
CZ3 |
CH2 |
HH2 |
182.2 |
179.9 |
| CD2 |
CE3 |
HE3 |
CZ3 |
180.0 |
180.0 |
| HE3 |
CE3 |
CZ3 |
CH2 |
175.5 |
180.1 |
| HE3 |
CE3 |
CZ3 |
HZ3 |
355.5 |
359.9 |
| CE2 |
CZ2 |
O1 |
CH2 |
179.1 |
180.0 |
| O1 |
CZ2 |
CH2 |
CZ3 |
179.6 |
180.1 |
| O1 |
CZ2 |
CH2 |
HH2 |
359.6 |
360.0 |
| CE2 |
CZ2 |
CH2 |
O1 |
180.9 |
180.0 |
| CE3 |
CZ3 |
CH2 |
CZ2 |
2.2 |
359.9 |
| CH2 |
CZ2 |
O1 |
H1 |
110.1 |
270.0 |
| CZ2 |
CH2 |
CZ3 |
HZ3 |
182.2 |
180.0 |
| CZ3 |
CH2 |
CZ2 |
HH2 |
180.0 |
180.1 |
| H1 |
O1 |
CZ2 |
CH2 |
110.1 |
270.0 |
| CH2 |
CZ3 |
CE3 |
HE3 |
175.5 |
180.1 |
| CE3 |
CZ3 |
CH2 |
HZ3 |
180.0 |
179.9 |
| CZ2 |
CH2 |
CZ3 |
HH2 |
180.0 |
179.9 |
| HZ3 |
CZ3 |
CE3 |
HE3 |
355.5 |
359.9 |
| CE3 |
CZ3 |
HZ3 |
CH2 |
180.0 |
180.1 |
| HZ3 |
CZ3 |
CH2 |
HH2 |
2.2 |
0.1 |
| CZ2 |
CH2 |
HH2 |
CZ3 |
180.0 |
180.1 |
| HH2 |
CH2 |
CZ3 |
HZ3 |
2.2 |
0.1 |