PDB Chemical Component 0A9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0A9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.456 |
1.469 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
C |
1.522 |
1.507 |
| CA |
CB |
1.529 |
1.531 |
| CA |
HA |
1.100 |
1.090 |
| C |
O |
1.239 |
1.208 |
| C |
OXT |
1.465 |
1.342 |
| CB |
CG |
1.505 |
1.507 |
| CB |
HBC1 |
1.100 |
1.090 |
| CB |
HBC2 |
1.100 |
1.091 |
| CG |
CD1 |
1.430 |
1.382 |
| CG |
CD2 |
1.423 |
1.382 |
| CD1 |
CE1 |
1.439 |
1.383 |
| CD1 |
HD1 |
1.080 |
1.081 |
| CD2 |
CE2 |
1.435 |
1.382 |
| CD2 |
HD2 |
1.080 |
1.081 |
| CE1 |
CZ |
1.439 |
1.383 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CE2 |
CZ |
1.439 |
1.383 |
| CE2 |
HE2 |
1.080 |
1.080 |
| CZ |
HZ |
1.080 |
1.080 |
| CM |
HMC1 |
1.100 |
1.090 |
| OXT |
CM |
1.382 |
1.452 |
| CM |
HMC2 |
1.100 |
1.090 |
| CM |
HMC3 |
1.100 |
1.090 |
Bond Angles for 0A9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
111.1 |
| N |
CA |
C |
106.6 |
109.5 |
| N |
CA |
CB |
110.7 |
109.4 |
| N |
CA |
HA |
110.0 |
109.5 |
| H |
N |
H2 |
109.4 |
111.0 |
| C |
CA |
CB |
107.7 |
109.4 |
| C |
CA |
HA |
112.9 |
109.5 |
| CA |
C |
O |
120.5 |
120.1 |
| CA |
C |
OXT |
123.0 |
120.0 |
| CB |
CA |
HA |
109.0 |
109.5 |
| CA |
CB |
CG |
114.8 |
109.4 |
| CA |
CB |
HBC1 |
107.7 |
109.5 |
| CA |
CB |
HBC2 |
107.7 |
109.4 |
| O |
C |
OXT |
116.4 |
120.0 |
| C |
OXT |
CM |
122.5 |
117.0 |
| CG |
CB |
HBC1 |
107.7 |
109.5 |
| CG |
CB |
HBC2 |
107.7 |
109.5 |
| CB |
CG |
CD1 |
120.6 |
120.0 |
| CB |
CG |
CD2 |
120.0 |
120.0 |
| HBC1 |
CB |
HBC2 |
111.1 |
109.5 |
| CD1 |
CG |
CD2 |
119.3 |
120.0 |
| CG |
CD1 |
CE1 |
120.7 |
120.0 |
| CG |
CD1 |
HD1 |
119.6 |
120.0 |
| CG |
CD2 |
CE2 |
121.1 |
120.0 |
| CG |
CD2 |
HD2 |
119.4 |
120.0 |
| CE1 |
CD1 |
HD1 |
119.6 |
120.0 |
| CD1 |
CE1 |
CZ |
119.5 |
120.0 |
| CD1 |
CE1 |
HE1 |
120.2 |
120.0 |
| CE2 |
CD2 |
HD2 |
119.4 |
120.0 |
| CD2 |
CE2 |
CZ |
119.5 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.2 |
120.0 |
| CZ |
CE1 |
HE1 |
120.2 |
120.0 |
| CE1 |
CZ |
CE2 |
119.8 |
120.0 |
| CE1 |
CZ |
HZ |
120.1 |
120.0 |
| CZ |
CE2 |
HE2 |
120.3 |
120.0 |
| CE2 |
CZ |
HZ |
120.1 |
120.1 |
| OXT |
CM |
HMC1 |
109.5 |
109.5 |
| HMC1 |
CM |
HMC2 |
109.5 |
109.4 |
| HMC1 |
CM |
HMC3 |
109.4 |
109.4 |
| OXT |
CM |
HMC2 |
109.5 |
109.5 |
| OXT |
CM |
HMC3 |
109.5 |
109.5 |
| HMC2 |
CM |
HMC3 |
109.5 |
109.5 |
Torsion Angles for 0A9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
236.0 |
| C |
CA |
N |
CB |
116.8 |
120.0 |
| C |
CA |
N |
HA |
237.3 |
240.0 |
| N |
CA |
C |
O |
145.0 |
340.1 |
| N |
CA |
C |
OXT |
320.6 |
160.0 |
| CB |
CA |
N |
HA |
120.5 |
120.0 |
| N |
CA |
CB |
CG |
275.7 |
295.0 |
| N |
CA |
CB |
HBC1 |
35.8 |
55.0 |
| N |
CA |
CB |
HBC2 |
155.7 |
175.0 |
| CA |
N |
H |
H2 |
120.0 |
124.0 |
| H |
N |
CA |
C |
180.0 |
60.0 |
| H |
N |
CA |
CB |
63.2 |
300.0 |
| H |
N |
CA |
HA |
302.7 |
180.0 |
| CA |
N |
H2 |
H |
240.0 |
236.0 |
| H2 |
N |
CA |
C |
300.0 |
183.9 |
| H2 |
N |
CA |
CB |
183.2 |
64.0 |
| H2 |
N |
CA |
HA |
62.7 |
304.0 |
| C |
CA |
N |
H |
180.0 |
60.0 |
| C |
CA |
N |
H2 |
300.0 |
183.9 |
| N |
CA |
C |
CB |
241.2 |
240.1 |
| N |
CA |
C |
HA |
120.9 |
120.0 |
| CB |
CA |
C |
HA |
239.7 |
240.0 |
| C |
CA |
CB |
CG |
159.6 |
175.0 |
| C |
CA |
CB |
HBC1 |
279.6 |
295.0 |
| C |
CA |
CB |
HBC2 |
39.6 |
55.1 |
| O |
C |
CA |
OXT |
184.4 |
180.0 |
| CA |
C |
OXT |
CM |
183.4 |
180.0 |
| CB |
CA |
N |
H |
63.2 |
300.0 |
| CB |
CA |
N |
H2 |
183.2 |
64.0 |
| N |
CA |
CB |
C |
116.2 |
120.0 |
| N |
CA |
CB |
HA |
238.9 |
240.0 |
| C |
CA |
CB |
HA |
122.7 |
120.1 |
| CB |
CA |
C |
O |
263.8 |
100.0 |
| CB |
CA |
C |
OXT |
79.4 |
280.0 |
| CG |
CB |
CA |
HBC1 |
240.0 |
240.0 |
| CG |
CB |
CA |
HBC2 |
120.0 |
120.0 |
| CA |
CB |
CG |
CD1 |
285.6 |
90.0 |
| CA |
CB |
CG |
CD2 |
108.2 |
269.8 |
| HBC1 |
CB |
CA |
HBC2 |
240.1 |
240.0 |
| HA |
CA |
N |
H |
302.7 |
180.0 |
| HA |
CA |
N |
H2 |
62.7 |
304.0 |
| N |
CA |
HA |
C |
241.1 |
240.0 |
| N |
CA |
HA |
CB |
121.5 |
120.0 |
| C |
CA |
HA |
CB |
240.5 |
240.0 |
| HA |
CA |
C |
O |
24.1 |
220.0 |
| HA |
CA |
C |
OXT |
199.7 |
40.0 |
| HA |
CA |
CB |
CG |
36.8 |
55.0 |
| HA |
CA |
CB |
HBC1 |
156.9 |
175.0 |
| HA |
CA |
CB |
HBC2 |
276.8 |
295.0 |
| O |
C |
CA |
CB |
263.8 |
100.0 |
| O |
C |
CA |
HA |
24.1 |
220.0 |
| CA |
C |
O |
OXT |
175.9 |
180.0 |
| O |
C |
OXT |
CM |
359.2 |
360.0 |
| OXT |
C |
CA |
CB |
79.4 |
280.0 |
| OXT |
C |
CA |
HA |
199.7 |
40.0 |
| CA |
C |
OXT |
O |
184.3 |
180.0 |
| C |
OXT |
CM |
HMC1 |
180.0 |
300.0 |
| C |
OXT |
CM |
HMC2 |
300.0 |
60.0 |
| C |
OXT |
CM |
HMC3 |
60.0 |
180.0 |
| CG |
CB |
CA |
HA |
36.8 |
55.0 |
| CA |
CB |
CG |
HBC1 |
120.0 |
120.0 |
| CA |
CB |
CG |
HBC2 |
240.0 |
240.1 |
| HBC1 |
CB |
CG |
HBC2 |
120.0 |
120.0 |
| CD1 |
CG |
CB |
CD2 |
177.4 |
180.3 |
| CB |
CG |
CD1 |
CE1 |
182.9 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
2.9 |
359.9 |
| CB |
CG |
CD2 |
CE2 |
177.1 |
180.0 |
| CB |
CG |
CD2 |
HD2 |
357.1 |
360.0 |
| HBC1 |
CB |
CA |
HA |
156.9 |
175.0 |
| CA |
CB |
HBC1 |
CG |
235.6 |
240.0 |
| CA |
CB |
HBC1 |
HBC2 |
117.8 |
120.0 |
| CG |
CB |
HBC1 |
HBC2 |
242.2 |
240.0 |
| HBC1 |
CB |
CG |
CD1 |
165.6 |
330.0 |
| HBC1 |
CB |
CG |
CD2 |
348.2 |
149.7 |
| HBC2 |
CB |
CA |
HA |
276.8 |
295.0 |
| CA |
CB |
HBC2 |
CG |
124.4 |
119.9 |
| CA |
CB |
HBC2 |
HBC1 |
242.2 |
240.0 |
| CG |
CB |
HBC2 |
HBC1 |
117.8 |
120.0 |
| HBC2 |
CB |
CG |
CD1 |
45.6 |
210.0 |
| HBC2 |
CB |
CG |
CD2 |
228.2 |
29.7 |
| CD1 |
CG |
CB |
HBC1 |
165.6 |
330.0 |
| CD1 |
CG |
CB |
HBC2 |
45.6 |
210.0 |
| CB |
CG |
CD1 |
CD2 |
182.6 |
179.7 |
| CD1 |
CG |
CD2 |
CE2 |
359.7 |
359.8 |
| CD1 |
CG |
CD2 |
HD2 |
179.7 |
179.7 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.1 |
| CG |
CD1 |
CE1 |
CZ |
359.8 |
360.0 |
| CG |
CD1 |
CE1 |
HE1 |
179.9 |
180.0 |
| CD2 |
CG |
CB |
HBC1 |
348.2 |
149.7 |
| CD2 |
CG |
CB |
HBC2 |
228.2 |
29.7 |
| CB |
CG |
CD2 |
CD1 |
177.4 |
180.3 |
| CD2 |
CG |
CD1 |
CE1 |
0.3 |
0.3 |
| CD2 |
CG |
CD1 |
HD1 |
180.3 |
180.2 |
| CE2 |
CD2 |
CG |
HD2 |
180.0 |
180.1 |
| CG |
CD2 |
CE2 |
CZ |
0.2 |
360.0 |
| CG |
CD2 |
CE2 |
HE2 |
180.2 |
180.0 |
| CE1 |
CD1 |
CG |
CD2 |
0.3 |
0.3 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
179.9 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
180.0 |
| CD1 |
CE1 |
CZ |
CE2 |
0.0 |
359.8 |
| CD1 |
CE1 |
CZ |
HZ |
180.0 |
180.0 |
| HD1 |
CD1 |
CG |
CD2 |
180.3 |
180.2 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.1 |
| HD1 |
CD1 |
CE1 |
CZ |
179.9 |
180.0 |
| HD1 |
CD1 |
CE1 |
HE1 |
359.9 |
0.0 |
| CG |
CD2 |
CE2 |
HD2 |
180.0 |
179.9 |
| CE1 |
CZ |
CE2 |
CD2 |
359.9 |
0.3 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
HZ |
180.0 |
180.0 |
| CG |
CD2 |
HD2 |
CE2 |
180.0 |
180.1 |
| HD2 |
CD2 |
CE2 |
CZ |
180.2 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
0.2 |
0.1 |
| CZ |
CE1 |
CD1 |
HD1 |
179.9 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
359.9 |
0.3 |
| CE1 |
CZ |
CE2 |
HE2 |
179.9 |
180.2 |
| CE2 |
CZ |
CE1 |
HZ |
180.0 |
179.7 |
| HE1 |
CE1 |
CD1 |
HD1 |
359.9 |
0.0 |
| CD1 |
CE1 |
HE1 |
CZ |
180.0 |
180.0 |
| HE1 |
CE1 |
CZ |
CE2 |
180.0 |
179.7 |
| HE1 |
CE1 |
CZ |
HZ |
0.0 |
360.0 |
| CZ |
CE2 |
CD2 |
HD2 |
180.2 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
| CE2 |
CZ |
CE1 |
HE1 |
180.0 |
179.7 |
| CE1 |
CZ |
CE2 |
HZ |
180.0 |
180.3 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.2 |
0.1 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
| HE2 |
CE2 |
CZ |
HZ |
359.9 |
360.0 |
| HZ |
CZ |
CE1 |
HE1 |
0.0 |
360.0 |
| CE1 |
CZ |
HZ |
CE2 |
180.0 |
179.7 |
| HZ |
CZ |
CE2 |
HE2 |
359.9 |
360.0 |
| OXT |
CM |
HMC1 |
HMC2 |
120.0 |
120.0 |
| OXT |
CM |
HMC1 |
HMC3 |
240.0 |
239.9 |
| HMC2 |
CM |
HMC1 |
HMC3 |
120.0 |
119.9 |
| HMC1 |
CM |
OXT |
HMC2 |
240.0 |
240.0 |
| HMC1 |
CM |
OXT |
HMC3 |
120.0 |
120.0 |
| HMC2 |
CM |
OXT |
HMC3 |
240.0 |
240.0 |
| OXT |
CM |
HMC2 |
HMC1 |
239.9 |
240.0 |
| HMC1 |
CM |
HMC2 |
HMC3 |
240.0 |
240.1 |
| OXT |
CM |
HMC2 |
HMC3 |
120.0 |
120.1 |
| OXT |
CM |
HMC3 |
HMC1 |
120.0 |
120.0 |
| HMC1 |
CM |
HMC3 |
HMC2 |
120.0 |
119.9 |
| OXT |
CM |
HMC3 |
HMC2 |
240.0 |
240.0 |