PDB Chemical Component 0A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 0A
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP1 |
P |
1.478 |
1.480 |
| OP2 |
P |
1.492 |
1.610 |
| P |
O5' |
1.602 |
1.610 |
| P |
OP3 |
1.598 |
1.610 |
| C6 |
N1 |
1.338 |
1.329 |
| N1 |
C2 |
1.473 |
1.321 |
| N3 |
C2 |
1.476 |
1.316 |
| C2 |
H2 |
1.080 |
1.080 |
| C4 |
N3 |
1.341 |
1.330 |
| N9 |
C4 |
1.328 |
1.372 |
| C5 |
C4 |
1.340 |
1.405 |
| N7 |
C5 |
1.322 |
1.355 |
| C5 |
C6 |
1.341 |
1.405 |
| N6 |
C6 |
1.333 |
1.385 |
| N6 |
HN6 |
1.000 |
0.970 |
| N6 |
HN6A |
1.000 |
0.970 |
| C8 |
N7 |
1.335 |
1.301 |
| C8 |
N9 |
1.325 |
1.363 |
| C8 |
H8 |
1.081 |
1.080 |
| N9 |
C1' |
1.486 |
1.465 |
| C2' |
C1' |
1.549 |
1.550 |
| C1' |
O4' |
1.439 |
1.445 |
| C1' |
H1' |
1.099 |
1.090 |
| C3' |
C2' |
1.485 |
1.547 |
| C2' |
O2' |
1.404 |
1.429 |
| C2' |
H2' |
1.100 |
1.090 |
| O2' |
HO2' |
0.950 |
0.967 |
| O3' |
C3' |
1.444 |
1.429 |
| C3' |
C4' |
1.524 |
1.541 |
| C3' |
H3' |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C5' |
C4' |
1.523 |
1.531 |
| C4' |
O4' |
1.459 |
1.437 |
| C4' |
H4' |
1.100 |
1.091 |
| O5' |
C5' |
1.421 |
1.429 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.101 |
1.090 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| OP3 |
HOP3 |
0.950 |
0.967 |
Bond Angles for 0A
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP3 |
106.8 |
109.5 |
| OP2 |
P |
OP3 |
107.9 |
109.5 |
| O5' |
P |
OP3 |
102.8 |
109.5 |
| P |
O5' |
C5' |
120.1 |
123.0 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| N1 |
C2 |
H2 |
124.4 |
118.8 |
| N3 |
C2 |
H2 |
124.4 |
118.8 |
| HN6 |
N6 |
HN6A |
109.5 |
120.0 |
| N9 |
C8 |
H8 |
126.3 |
125.0 |
| C8 |
N9 |
C1' |
131.5 |
126.3 |
| N9 |
C1' |
O4' |
111.0 |
110.6 |
| N9 |
C1' |
H1' |
109.6 |
110.6 |
| C2' |
C1' |
O4' |
105.7 |
103.5 |
| C2' |
C1' |
H1' |
108.8 |
110.7 |
| O4' |
C1' |
H1' |
110.3 |
110.6 |
| C1' |
O4' |
C4' |
107.4 |
106.9 |
| C3' |
C2' |
H2' |
112.8 |
110.9 |
| O2' |
C2' |
H2' |
114.2 |
110.8 |
| C2' |
O2' |
HO2' |
109.5 |
114.0 |
| O3' |
C3' |
C4' |
110.7 |
110.5 |
| O3' |
C3' |
H3' |
112.0 |
110.5 |
| C4' |
C3' |
H3' |
110.7 |
110.5 |
| C3' |
C4' |
O4' |
103.9 |
107.3 |
| C3' |
C4' |
H4' |
110.9 |
109.9 |
| C5' |
C4' |
H4' |
110.9 |
110.0 |
| O4' |
C4' |
H4' |
111.9 |
109.9 |
| O5' |
C5' |
H5' |
109.6 |
109.5 |
| O5' |
C5' |
H5'A |
109.6 |
109.5 |
| H5' |
C5' |
H5'A |
109.5 |
109.5 |
Torsion Angles for 0A
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP2 |
P |
OP1 |
OP3 |
237.6 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
112.3 |
240.0 |
| OP1 |
P |
OP3 |
HOP3 |
360.0 |
60.0 |
| OP1 |
P |
OP2 |
OP3 |
121.9 |
240.0 |
| O5' |
P |
OP2 |
OP3 |
250.5 |
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
129.3 |
300.0 |
| OP1 |
P |
O5' |
OP3 |
245.2 |
120.0 |
| OP2 |
P |
O5' |
OP3 |
113.1 |
240.0 |
| O5' |
P |
OP3 |
HOP3 |
240.9 |
180.0 |
| P |
O5' |
C5' |
H5' |
60.1 |
60.1 |
| P |
O5' |
C5' |
H5'A |
300.0 |
300.0 |
| OP3 |
P |
O5' |
C5' |
64.7 |
185.0 |
| C6 |
N1 |
C2 |
H2 |
179.4 |
180.0 |
| N3 |
C2 |
N1 |
H2 |
180.0 |
180.1 |
| N1 |
C2 |
N3 |
H2 |
180.0 |
179.9 |
| C4 |
N3 |
C2 |
H2 |
181.0 |
180.1 |
| C8 |
N9 |
C1' |
O4' |
324.6 |
336.4 |
| C8 |
N9 |
C1' |
H1' |
202.5 |
213.6 |
| H8 |
C8 |
N9 |
C1' |
0.4 |
0.1 |
| C1' |
N9 |
C8 |
H8 |
0.4 |
0.1 |
| C2' |
C1' |
N9 |
O4' |
117.5 |
114.1 |
| C2' |
C1' |
N9 |
H1' |
239.6 |
236.9 |
| O4' |
C1' |
N9 |
H1' |
122.1 |
122.9 |
| N9 |
C1' |
O4' |
C4' |
121.4 |
158.6 |
| N9 |
C1' |
C2' |
O4' |
239.4 |
241.5 |
| N9 |
C1' |
C2' |
H1' |
120.9 |
123.0 |
| O4' |
C1' |
C2' |
H1' |
241.6 |
241.5 |
| C2' |
C1' |
O4' |
C4' |
0.5 |
40.1 |
| N9 |
C1' |
O4' |
H1' |
238.3 |
237.2 |
| C2' |
C1' |
O4' |
H1' |
117.4 |
118.6 |
| C3' |
C4' |
O4' |
C1' |
332.1 |
333.5 |
| C1' |
O4' |
C4' |
H4' |
91.8 |
92.9 |
| N9 |
C1' |
H1' |
O4' |
122.5 |
122.9 |
| C2' |
C1' |
H1' |
O4' |
244.5 |
245.9 |
| H1' |
C1' |
O4' |
C4' |
243.0 |
281.4 |
| C3' |
C2' |
C1' |
O4' |
27.6 |
323.0 |
| C3' |
C2' |
C1' |
H1' |
146.0 |
81.5 |
| O2' |
C2' |
C3' |
H2' |
232.6 |
236.4 |
| C3' |
C2' |
O2' |
HO2' |
70.8 |
67.3 |
| O2' |
C2' |
C1' |
O4' |
274.0 |
204.7 |
| O2' |
C2' |
C1' |
H1' |
32.5 |
323.3 |
| C3' |
C2' |
O2' |
H2' |
126.6 |
123.7 |
| H2' |
C2' |
C1' |
O4' |
148.4 |
81.2 |
| H2' |
C2' |
C1' |
H1' |
266.9 |
199.7 |
| H2' |
C2' |
O2' |
HO2' |
304.1 |
303.6 |
| HO2' |
O2' |
C2' |
H2' |
304.1 |
303.6 |
| O3' |
C3' |
C2' |
H2' |
80.1 |
144.0 |
| C4' |
C3' |
O3' |
H3' |
124.1 |
122.6 |
| O3' |
C3' |
C4' |
O4' |
162.4 |
120.8 |
| O3' |
C3' |
C4' |
H4' |
42.1 |
1.3 |
| C1' |
O4' |
C4' |
C3' |
332.1 |
333.5 |
| C4' |
C3' |
C2' |
H2' |
197.1 |
262.7 |
| O3' |
C3' |
C4' |
H3' |
235.2 |
237.4 |
| C5' |
C4' |
C3' |
H4' |
236.5 |
238.8 |
| O4' |
C4' |
C3' |
H4' |
120.3 |
119.4 |
| H3' |
C3' |
C2' |
H2' |
313.9 |
21.4 |
| O3' |
C3' |
H3' |
C4' |
124.1 |
122.6 |
| H3' |
C3' |
C4' |
O4' |
287.2 |
243.3 |
| H3' |
C3' |
C4' |
H4' |
166.9 |
123.9 |
| HO3' |
O3' |
C3' |
C4' |
70.0 |
183.8 |
| HO3' |
O3' |
C3' |
H3' |
305.9 |
61.3 |
| P |
O5' |
C5' |
C4' |
180.0 |
180.0 |
| C5' |
C4' |
C3' |
H3' |
43.3 |
2.8 |
| C3' |
C4' |
C5' |
H4' |
123.5 |
121.1 |
| O4' |
C4' |
C5' |
H4' |
236.8 |
238.9 |
| C4' |
O4' |
C1' |
H1' |
243.0 |
281.4 |
| O4' |
C4' |
C3' |
H3' |
287.2 |
243.3 |
| C3' |
C4' |
O4' |
H4' |
240.3 |
240.6 |
| C5' |
C4' |
O4' |
H4' |
122.6 |
121.1 |
| H4' |
C4' |
C3' |
H3' |
166.9 |
123.9 |
| C3' |
C4' |
H4' |
O4' |
115.5 |
117.9 |
| C5' |
O5' |
P |
OP3 |
64.7 |
185.0 |
| O5' |
C5' |
C4' |
H4' |
194.3 |
53.9 |
| H5' |
C5' |
O5' |
H5'A |
120.1 |
120.0 |
| H5' |
C5' |
C4' |
H4' |
314.2 |
173.9 |
| O5' |
C5' |
H5' |
H5'A |
239.8 |
239.9 |
| H5'A |
C5' |
C4' |
H4' |
74.3 |
293.9 |
| O5' |
C5' |
H5'A |
H5' |
120.2 |
120.1 |
| HOP2 |
OP2 |
P |
OP3 |
238.1 |
300.0 |