PDB Chemical Component 09Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 09Z

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.555	1.530
C2	C3	1.551	1.531
C2	N4	1.476	1.465
N4	C5	1.389	1.376
C5	N6	1.360	1.302
C5	S9	1.696	1.708
N6	C7	1.338	1.313
C7	C8	1.369	1.383
C7	N10	1.292	1.385
C8	S9	1.700	1.761
C8	C11	1.513	1.407
C11	C12	1.484	1.481
C11	O18	1.352	1.220
C12	C13	1.457	1.399
C12	C17	1.449	1.396
C13	C14	1.443	1.384
C14	C15	1.424	1.384
C15	N16	1.403	1.320
N16	C17	1.427	1.316
C1	H1	1.100	1.090
C1	H1A	1.099	1.090
C1	H1B	1.100	1.090
C2	H2	1.099	1.090
C3	H3	1.100	1.090
C3	H3A	1.100	1.090
C3	H3B	1.099	1.090
N4	HN4	1.000	0.971
N10	HN10	1.000	0.969
N10	HN1A	0.999	0.971
C13	H13	1.080	1.080
C14	H14	1.080	1.079
C15	H15	1.080	1.080
C17	H17	1.080	1.080

Bond Angles for 09Z

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	C3	109.4	109.5
C1	C2	N4	107.9	109.5
C2	C1	H1	109.5	109.4
C2	C1	H1A	109.5	109.4
C2	C1	H1B	109.5	109.5
C1	C2	H2	110.9	109.5
C3	C2	N4	110.7	109.5
C3	C2	H2	108.2	109.5
C2	C3	H3	109.5	109.4
C2	C3	H3A	109.4	109.5
C2	C3	H3B	109.5	109.5
C2	N4	C5	121.5	120.0
N4	C2	H2	109.7	109.5
C2	N4	HN4	105.6	120.0
N4	C5	N6	120.6	124.5
N4	C5	S9	124.7	124.6
C5	N4	HN4	105.6	120.0
N6	C5	S9	114.7	110.8
C5	N6	C7	110.4	117.3
C5	S9	C8	88.7	90.6
N6	C7	C8	114.2	113.6
N6	C7	N10	121.9	123.2
C8	C7	N10	123.9	123.3
C7	C8	S9	112.0	107.7
C7	C8	C11	124.3	126.1
C7	N10	HN10	109.5	120.0
C7	N10	HN1A	109.5	120.0
S9	C8	C11	123.7	126.2
C8	C11	C12	123.7	120.0
C8	C11	O18	118.1	120.0
C12	C11	O18	118.2	120.0
C11	C12	C13	119.7	120.5
C11	C12	C17	121.9	120.6
C13	C12	C17	118.4	118.9
C12	C13	C14	121.3	118.3
C12	C13	H13	119.3	120.8
C12	C17	N16	118.3	120.6
C12	C17	H17	120.9	119.7
C13	C14	C15	118.8	119.3
C14	C13	H13	119.4	120.9
C13	C14	H14	120.6	120.4
C14	C15	N16	119.9	121.1
C15	C14	H14	120.6	120.3
C14	C15	H15	120.0	119.5
C15	N16	C17	123.3	121.9
N16	C15	H15	120.0	119.5
N16	C17	H17	120.8	119.8
H1	C1	H1A	109.4	109.5
H1	C1	H1B	109.5	109.5
H1A	C1	H1B	109.5	109.5
H3	C3	H3A	109.5	109.5
H3	C3	H3B	109.4	109.5
H3A	C3	H3B	109.5	109.5
HN10	N10	HN1A	109.4	120.0

Torsion Angles for 09Z

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C1	N4	239.5	240.0
C3	C2	C1	H2	119.3	120.0
C1	C2	C3	H3	180.0	60.0
C1	C2	C3	H3A	300.0	179.9
C1	C2	C3	H3B	60.0	300.0
C1	C2	N4	C5	164.6	85.0
N4	C2	C1	H2	239.8	240.0
C1	C2	N4	HN4	284.5	265.0
H1	C1	C2	H1A	240.0	240.0
H1	C1	C2	H1B	120.0	120.0
H1A	C1	C2	H1B	240.0	240.0
C1	C2	C3	N4	118.8	120.0
C3	C2	C1	H1	180.0	60.0
C3	C2	C1	H1A	300.0	180.0
C3	C2	C1	H1B	60.0	300.0
C1	C2	C3	H2	239.0	240.0
C3	C2	N4	C5	284.3	205.0
N4	C2	C3	H2	120.2	120.0
C3	C2	N4	HN4	44.3	25.0
H3	C3	C2	H3A	240.0	240.0
H3	C3	C2	H3B	120.0	120.0
H3A	C3	C2	H3B	240.0	239.9
C1	C2	N4	C3	240.3	240.0
N4	C2	C1	H1	300.6	180.0
N4	C2	C1	H1A	60.5	300.0
N4	C2	C1	H1B	180.6	60.0
C1	C2	N4	H2	121.0	120.0
C3	C2	N4	H2	240.7	240.0
N4	C2	C3	H3	61.2	300.0
N4	C2	C3	H3A	181.2	59.9
N4	C2	C3	H3B	301.2	180.0
C2	N4	C5	N6	166.7	0.0
C2	N4	C5	S9	346.8	179.7
C5	N4	C2	HN4	240.0	180.0
C5	N4	C2	H2	43.6	325.0
C2	N4	C5	HN4	120.0	180.0
N6	C5	N4	S9	179.9	180.3
N4	C5	N6	C7	180.2	180.0
N4	C5	S9	C8	179.5	179.9
N4	C5	N6	S9	180.1	179.8
N6	C5	N4	HN4	46.7	180.0
N6	C5	S9	C8	359.6	359.7
C5	N6	C7	C8	0.3	360.0
C5	N6	C7	N10	179.6	180.0
N4	C5	S9	N6	179.9	180.2
S9	C5	N4	HN4	226.8	359.7
S9	C5	N6	C7	0.1	0.3
C7	C8	S9	C5	0.5	0.3
C5	S9	C8	C11	180.7	180.1
C7	N6	C5	S9	0.1	0.3
C8	C7	N6	N10	180.8	179.9
N6	C7	C8	S9	359.4	359.8
N6	C7	C8	C11	179.2	180.0
N6	C7	N10	HN10	0.0	359.9
N6	C7	N10	HN1A	120.0	180.0
C5	S9	C8	C7	0.5	0.3
N6	C7	C8	N10	179.2	180.1
C8	C7	N10	HN10	179.1	180.0
C8	C7	N10	HN1A	299.1	0.1
S9	C8	C7	C11	180.2	179.8
C7	C8	C11	C12	182.3	173.4
C7	C8	C11	O18	1.0	353.5
N6	C7	N10	C8	180.9	179.9
N10	C7	C8	S9	180.2	179.7
N10	C7	C8	C11	360.0	359.9
HN10	N10	C7	HN1A	240.0	179.9
S9	C8	C7	N10	180.2	179.7
C7	C8	S9	C11	179.8	180.2
S9	C8	C11	C12	2.1	353.6
S9	C8	C11	O18	180.8	173.7
C11	C8	C7	N10	360.0	359.9
C7	C8	C11	S9	180.2	179.8
C12	C11	C8	O18	181.3	180.0
C8	C11	C12	C13	46.3	333.7
C8	C11	C12	C17	225.3	153.4
C8	C11	C12	O18	178.7	180.0
C13	C12	C11	C17	181.0	180.4
C11	C12	C13	C14	179.6	180.0
C11	C12	C13	H13	359.6	359.9
C11	C12	C17	N16	180.5	179.8
C11	C12	C17	H17	0.5	0.1
C8	C11	O18	C12	181.3	180.0
O18	C11	C12	C13	227.6	153.7
O18	C11	C12	C17	46.6	333.3
C13	C12	C11	O18	227.6	153.7
C11	C12	C13	C17	179.0	179.6
C13	C12	C17	N16	359.5	359.4
C13	C12	C17	H17	179.4	179.8
C12	C13	C14	C15	359.8	360.0
C14	C13	C12	H13	180.0	180.1
C12	C13	C14	H14	179.8	180.0
C17	C12	C11	O18	46.6	333.3
C11	C12	C17	C13	181.0	180.4
C17	C12	C13	C14	0.6	0.3
C17	C12	C13	H13	180.6	180.2
C15	N16	C17	C12	0.2	0.6
N16	C17	C12	H17	180.0	179.7
C14	C13	C12	C17	0.6	0.3
C12	C13	C14	H13	180.0	179.9
C13	C14	C15	N16	359.9	0.0
C15	C14	C13	H14	180.0	180.0
C13	C14	C15	H15	179.8	180.0
C15	C14	C13	H13	179.8	180.0
C13	C14	C15	H14	180.0	180.0
C14	C15	N16	C17	0.2	359.7
N16	C15	C14	H15	180.0	180.0
C12	C17	N16	C15	0.2	0.6
N16	C15	C14	H14	179.8	180.0
C14	C15	N16	H15	180.0	180.0
C15	N16	C17	H17	180.2	180.2
C12	C17	N16	H17	180.0	180.3
C17	N16	C15	H15	180.2	179.7
H1	C1	C2	C3	180.0	60.0
H1	C1	C2	N4	300.6	180.0
C2	C1	H1	H1A	120.0	119.9
C2	C1	H1	H1B	240.0	240.0
H1	C1	C2	H2	60.7	300.0
H1A	C1	H1	H1B	120.0	120.1
H1A	C1	C2	C3	300.0	180.0
H1A	C1	C2	N4	60.5	300.0
C2	C1	H1A	H1	240.0	240.0
C2	C1	H1A	H1B	120.0	120.0
H1A	C1	C2	H2	180.7	60.0
H1	C1	H1A	H1B	240.0	239.9
H1B	C1	C2	C3	60.0	300.0
H1B	C1	C2	N4	180.6	60.0
C2	C1	H1B	H1	120.0	120.0
C2	C1	H1B	H1A	240.0	240.0
H1B	C1	C2	H2	300.7	180.0
H1	C1	H1B	H1A	119.9	120.0
C1	C2	H2	C3	120.0	120.0
C1	C2	H2	N4	240.9	240.0
H2	C2	C1	H1	60.7	300.0
H2	C2	C1	H1A	180.7	60.0
H2	C2	C1	H1B	300.7	180.0
C3	C2	H2	N4	120.9	120.0
H2	C2	C3	H3	301.0	180.0
H2	C2	C3	H3A	61.0	299.9
H2	C2	C3	H3B	181.0	60.0
H2	C2	N4	C5	43.6	325.0
H2	C2	N4	HN4	163.6	145.1
H3	C3	C2	N4	61.2	300.0
H3	C3	C2	H2	301.0	180.0
C2	C3	H3	H3A	120.0	120.0
C2	C3	H3	H3B	240.0	240.0
H3A	C3	H3	H3B	120.0	120.1
H3A	C3	C2	N4	181.2	59.9
H3A	C3	C2	H2	61.0	299.9
C2	C3	H3A	H3	240.0	240.0
C2	C3	H3A	H3B	120.0	120.0
H3	C3	H3A	H3B	240.0	240.0
H3B	C3	C2	N4	301.2	180.0
H3B	C3	C2	H2	181.0	60.0
C2	C3	H3B	H3	120.0	120.0
C2	C3	H3B	H3A	240.0	240.0
H3	C3	H3B	H3A	120.0	120.0
C2	N4	HN4	C5	230.1	180.0
HN4	N4	C2	H2	163.6	145.1
HN4	N4	C5	N6	46.7	180.0
HN4	N4	C5	S9	226.8	359.7
C7	N10	HN10	HN1A	120.0	180.1
C7	N10	HN1A	HN10	239.9	179.9
H13	C13	C12	C17	180.6	180.2
C12	C13	H13	C14	180.0	180.1
H13	C13	C14	C15	179.8	180.0
H13	C13	C14	H14	359.8	0.1
C13	C14	H14	C15	180.0	180.0
H14	C14	C13	H13	359.8	0.1
H14	C14	C15	N16	179.8	180.0
H14	C14	C15	H15	359.8	360.0
C14	C15	H15	N16	180.0	180.0
H15	C15	C14	H14	359.8	360.0
H15	C15	N16	C17	180.2	179.7
C12	C17	H17	N16	180.0	179.7