PDB Chemical Component 09R
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 09R
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
N1 |
1.346 |
1.319 |
| C1 |
H1 |
1.080 |
1.079 |
| C2 |
C1 |
1.414 |
1.388 |
| C3 |
C4 |
1.420 |
1.384 |
| C3 |
C2 |
1.439 |
1.394 |
| C3 |
H2 |
1.080 |
1.080 |
| C4 |
C5 |
1.421 |
1.384 |
| C4 |
H3 |
1.080 |
1.080 |
| C5 |
N1 |
1.341 |
1.319 |
| C5 |
BR1 |
1.729 |
1.891 |
| N2 |
C2 |
1.373 |
1.398 |
| N2 |
C6 |
1.469 |
1.480 |
| C6 |
H4 |
1.100 |
1.089 |
| C6 |
H5 |
1.100 |
1.091 |
| C7 |
C6 |
1.533 |
1.461 |
| C7 |
H6 |
1.100 |
1.090 |
| C7 |
H7 |
1.100 |
1.090 |
| N3 |
C7 |
1.467 |
1.481 |
| N3 |
H8 |
1.000 |
1.009 |
| C8 |
N3 |
1.492 |
1.442 |
| C9 |
C8 |
1.549 |
1.543 |
| C9 |
C10 |
1.556 |
1.543 |
| C10 |
N2 |
1.482 |
1.442 |
| C10 |
H11 |
1.100 |
1.090 |
| C10 |
H12 |
1.100 |
1.090 |
| C8 |
H9 |
1.100 |
1.090 |
| C8 |
H121 |
1.100 |
1.090 |
| C9 |
H10 |
1.100 |
1.091 |
| C9 |
H14 |
1.100 |
1.090 |
Bond Angles for 09R
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N1 |
C1 |
H1 |
117.5 |
119.7 |
| C2 |
C1 |
N1 |
125.1 |
120.6 |
| C1 |
N1 |
C5 |
119.3 |
121.8 |
| C2 |
C1 |
H1 |
117.5 |
119.7 |
| C4 |
C3 |
H2 |
120.2 |
120.9 |
| C3 |
C4 |
C5 |
118.8 |
119.2 |
| C3 |
C4 |
H3 |
120.6 |
120.4 |
| C5 |
C4 |
H3 |
120.6 |
120.4 |
| C4 |
C5 |
N1 |
121.7 |
120.9 |
| C4 |
C5 |
BR1 |
124.8 |
119.5 |
| N1 |
C5 |
BR1 |
113.4 |
119.6 |
| N2 |
C6 |
H4 |
109.0 |
109.0 |
| N2 |
C6 |
H5 |
109.0 |
108.9 |
| H4 |
C6 |
H5 |
109.9 |
108.9 |
| C7 |
C6 |
H4 |
109.1 |
109.0 |
| C7 |
C6 |
H5 |
109.1 |
108.9 |
| H6 |
C7 |
H7 |
109.9 |
108.9 |
| N3 |
C7 |
H6 |
109.1 |
108.9 |
| N3 |
C7 |
H7 |
109.1 |
108.9 |
| C8 |
N3 |
H8 |
106.8 |
111.0 |
| C9 |
C8 |
H9 |
106.1 |
108.9 |
| C9 |
C8 |
H121 |
106.1 |
108.8 |
| C9 |
C10 |
H11 |
105.6 |
108.9 |
| C9 |
C10 |
H12 |
105.6 |
108.9 |
| C10 |
C9 |
H10 |
106.6 |
109.0 |
| C10 |
C9 |
H14 |
106.6 |
109.1 |
| H11 |
C10 |
H12 |
113.0 |
108.8 |
| H9 |
C8 |
H121 |
112.6 |
108.8 |
| H10 |
C9 |
H14 |
112.2 |
109.0 |
Torsion Angles for 09R
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
N1 |
H1 |
180.0 |
179.8 |
| C4 |
C5 |
N1 |
C1 |
359.6 |
360.0 |
| C1 |
N1 |
C5 |
BR1 |
177.8 |
180.0 |
| C2 |
C1 |
H1 |
N1 |
180.0 |
180.2 |
| H1 |
C1 |
N1 |
C5 |
180.3 |
180.3 |
| N1 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
| C2 |
C1 |
N1 |
C5 |
0.3 |
0.0 |
| C5 |
C4 |
C3 |
H3 |
180.0 |
180.1 |
| C3 |
C4 |
C5 |
N1 |
359.6 |
360.0 |
| C3 |
C4 |
C5 |
BR1 |
181.7 |
180.0 |
| C3 |
C2 |
C1 |
N1 |
0.5 |
360.0 |
| C3 |
C2 |
C1 |
H1 |
180.5 |
179.7 |
| H2 |
C3 |
C4 |
C5 |
181.2 |
180.0 |
| H2 |
C3 |
C4 |
H3 |
1.2 |
360.0 |
| C1 |
N1 |
C5 |
C4 |
359.6 |
360.0 |
| C5 |
C4 |
C3 |
H2 |
181.2 |
180.0 |
| C3 |
C4 |
C5 |
H3 |
180.0 |
179.9 |
| N1 |
C5 |
C4 |
BR1 |
178.0 |
180.0 |
| H3 |
C4 |
C3 |
H2 |
1.2 |
360.0 |
| C3 |
C4 |
H3 |
C5 |
180.0 |
180.1 |
| H3 |
C4 |
C5 |
N1 |
179.6 |
180.0 |
| H3 |
C4 |
C5 |
BR1 |
1.7 |
0.0 |
| C5 |
N1 |
C1 |
H1 |
180.3 |
180.3 |
| N1 |
C5 |
C4 |
H3 |
179.6 |
180.0 |
| C4 |
C5 |
N1 |
BR1 |
181.8 |
180.0 |
| BR1 |
C5 |
C4 |
H3 |
1.7 |
0.0 |
| C4 |
C5 |
BR1 |
N1 |
178.1 |
180.0 |
| N2 |
C2 |
C1 |
H1 |
0.3 |
359.7 |
| H4 |
C6 |
N2 |
H5 |
240.0 |
241.3 |
| C7 |
C6 |
N2 |
H4 |
240.0 |
239.3 |
| C7 |
C6 |
N2 |
H5 |
120.0 |
120.6 |
| N2 |
C6 |
H4 |
H5 |
119.4 |
118.7 |
| C7 |
C6 |
H4 |
H5 |
240.5 |
241.4 |
| N2 |
C6 |
H5 |
H4 |
240.6 |
241.3 |
| C7 |
C6 |
H5 |
H4 |
119.5 |
118.7 |
| N2 |
C6 |
C7 |
H4 |
120.0 |
120.8 |
| N2 |
C6 |
C7 |
H5 |
240.0 |
239.4 |
| H4 |
C6 |
C7 |
H5 |
120.0 |
118.6 |
| H6 |
C7 |
C6 |
H4 |
69.7 |
60.6 |
| H6 |
C7 |
C6 |
H5 |
309.7 |
302.0 |
| N3 |
C7 |
H6 |
H7 |
240.5 |
241.4 |
| H7 |
C7 |
C6 |
H4 |
189.8 |
179.4 |
| H7 |
C7 |
C6 |
H5 |
69.7 |
60.7 |
| N3 |
C7 |
H7 |
H6 |
119.5 |
118.6 |
| N3 |
C7 |
C6 |
H4 |
309.8 |
300.0 |
| N3 |
C7 |
C6 |
H5 |
189.7 |
181.3 |
| H6 |
C7 |
N3 |
H7 |
120.0 |
118.6 |
| H8 |
N3 |
C7 |
H6 |
268.0 |
282.1 |
| H8 |
N3 |
C7 |
H7 |
148.0 |
163.4 |
| C8 |
N3 |
C7 |
H6 |
148.0 |
158.9 |
| C8 |
N3 |
C7 |
H7 |
28.0 |
40.3 |
| C9 |
C8 |
N3 |
H8 |
269.7 |
331.2 |
| H9 |
C8 |
C9 |
H121 |
120.0 |
118.5 |
| C10 |
C9 |
C8 |
H9 |
237.8 |
198.1 |
| C10 |
C9 |
C8 |
H121 |
117.8 |
79.7 |
| H11 |
C10 |
C9 |
H12 |
240.0 |
118.4 |
| H10 |
C9 |
C10 |
H14 |
120.0 |
118.9 |
| C10 |
N2 |
C6 |
H4 |
136.9 |
40.4 |
| C10 |
N2 |
C6 |
H5 |
256.9 |
159.1 |
| C9 |
C10 |
H11 |
H12 |
114.9 |
241.5 |
| H11 |
C10 |
C9 |
H10 |
45.9 |
77.6 |
| H11 |
C10 |
C9 |
H14 |
285.9 |
318.7 |
| C9 |
C10 |
H12 |
H11 |
245.1 |
118.5 |
| H12 |
C10 |
C9 |
H10 |
165.9 |
319.1 |
| H12 |
C10 |
C9 |
H14 |
45.9 |
200.3 |
| H9 |
C8 |
N3 |
H8 |
29.7 |
92.0 |
| C9 |
C8 |
H9 |
H121 |
244.3 |
241.5 |
| H121 |
C8 |
N3 |
H8 |
149.7 |
210.4 |
| C9 |
C8 |
H121 |
H9 |
115.7 |
118.5 |
| H10 |
C9 |
C8 |
H9 |
357.8 |
318.7 |
| H10 |
C9 |
C8 |
H121 |
237.8 |
200.3 |
| H10 |
C9 |
C10 |
H11 |
45.9 |
77.6 |
| H10 |
C9 |
C10 |
H12 |
165.9 |
319.1 |
| C10 |
C9 |
H10 |
H14 |
243.7 |
241.1 |
| H14 |
C9 |
C8 |
H9 |
117.8 |
77.5 |
| H14 |
C9 |
C8 |
H121 |
357.8 |
319.1 |
| H14 |
C9 |
C10 |
H11 |
285.9 |
318.7 |
| H14 |
C9 |
C10 |
H12 |
45.9 |
200.3 |
| C10 |
C9 |
H14 |
H10 |
116.3 |
118.9 |