PDB Chemical Component 09O
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 09O
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C3 |
C4 |
1.539 |
1.508 |
| C3 |
N1 |
1.484 |
1.479 |
| C4 |
C5 |
1.536 |
1.536 |
| N1 |
C2 |
1.486 |
1.400 |
| C5 |
N2 |
1.472 |
1.482 |
| C2 |
C1 |
1.553 |
1.542 |
| N2 |
C1 |
1.474 |
1.446 |
| N2 |
C8 |
1.367 |
1.397 |
| C9 |
C8 |
1.422 |
1.392 |
| C9 |
C10 |
1.411 |
1.386 |
| C8 |
C7 |
1.425 |
1.390 |
| C10 |
C6 |
1.405 |
1.382 |
| C7 |
N3 |
1.349 |
1.318 |
| C6 |
N3 |
1.354 |
1.319 |
| C1 |
H1 |
1.099 |
1.089 |
| C1 |
H2 |
1.100 |
1.091 |
| C2 |
H3 |
1.100 |
1.090 |
| C2 |
H4 |
1.100 |
1.090 |
| N1 |
H5 |
1.000 |
1.009 |
| C3 |
H7 |
1.100 |
1.090 |
| C3 |
H8 |
1.100 |
1.090 |
| C4 |
H9 |
1.100 |
1.090 |
| C4 |
H10 |
1.100 |
1.090 |
| C5 |
H11 |
1.100 |
1.090 |
| C5 |
H12 |
1.100 |
1.091 |
| C6 |
H13 |
1.080 |
1.080 |
| C7 |
H14 |
1.080 |
1.079 |
| C9 |
H15 |
1.080 |
1.081 |
| C10 |
H16 |
1.080 |
1.079 |
Bond Angles for 09O
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C4 |
C5 |
112.2 |
112.1 |
| C4 |
C3 |
H7 |
108.7 |
109.6 |
| C4 |
C3 |
H8 |
108.7 |
109.6 |
| C3 |
C4 |
H9 |
108.6 |
108.9 |
| C3 |
C4 |
H10 |
108.6 |
109.0 |
| C3 |
N1 |
H5 |
107.4 |
111.0 |
| C4 |
C5 |
N2 |
111.9 |
112.6 |
| C5 |
C4 |
H9 |
108.6 |
108.9 |
| C5 |
C4 |
H10 |
108.6 |
109.0 |
| C4 |
C5 |
H11 |
108.7 |
109.0 |
| C4 |
C5 |
H12 |
108.7 |
108.9 |
| N1 |
C2 |
H3 |
107.6 |
109.0 |
| N1 |
C2 |
H4 |
107.6 |
108.9 |
| C5 |
N2 |
C8 |
122.8 |
111.0 |
| N2 |
C5 |
H11 |
108.6 |
108.8 |
| N2 |
C5 |
H12 |
108.7 |
108.8 |
| C2 |
C1 |
H1 |
107.5 |
109.6 |
| C2 |
C1 |
H2 |
107.6 |
109.6 |
| N2 |
C1 |
H1 |
107.5 |
109.6 |
| N2 |
C1 |
H2 |
107.5 |
109.5 |
| N2 |
C8 |
C7 |
121.0 |
120.5 |
| C10 |
C9 |
H15 |
120.0 |
120.8 |
| C9 |
C10 |
H16 |
120.8 |
120.4 |
| C8 |
C7 |
H14 |
117.9 |
119.7 |
| C10 |
C6 |
H13 |
118.4 |
119.5 |
| N3 |
C6 |
H13 |
118.4 |
119.5 |
| H1 |
C1 |
H2 |
111.3 |
109.6 |
| H3 |
C2 |
H4 |
111.3 |
108.9 |
| H7 |
C3 |
H8 |
110.2 |
109.9 |
| H9 |
C4 |
H10 |
110.3 |
108.9 |
| H11 |
C5 |
H12 |
110.3 |
108.8 |
Torsion Angles for 09O
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C3 |
N1 |
H5 |
200.2 |
46.3 |
| C3 |
C4 |
C5 |
N2 |
73.7 |
318.4 |
| C5 |
C4 |
C3 |
H9 |
240.0 |
239.4 |
| C5 |
C4 |
C3 |
H10 |
120.0 |
120.7 |
| C3 |
C4 |
C5 |
H11 |
193.6 |
79.3 |
| C3 |
C4 |
C5 |
H12 |
313.7 |
197.8 |
| H7 |
C3 |
C4 |
H8 |
240.0 |
120.7 |
| H9 |
C4 |
C3 |
H10 |
240.0 |
241.3 |
| C3 |
N1 |
C2 |
H3 |
36.5 |
301.1 |
| C3 |
N1 |
C2 |
H4 |
156.5 |
182.4 |
| C5 |
C4 |
C3 |
H7 |
59.9 |
332.9 |
| C5 |
C4 |
C3 |
H8 |
179.9 |
212.2 |
| C3 |
C4 |
C5 |
H9 |
120.0 |
120.6 |
| C3 |
C4 |
C5 |
H10 |
240.0 |
239.3 |
| C4 |
C5 |
N2 |
C8 |
93.8 |
192.2 |
| N2 |
C5 |
C4 |
H11 |
240.0 |
239.2 |
| N2 |
C5 |
C4 |
H12 |
120.0 |
120.7 |
| H9 |
C4 |
C5 |
H10 |
120.0 |
118.7 |
| H11 |
C5 |
C4 |
H12 |
240.0 |
241.5 |
| N1 |
C2 |
C1 |
H1 |
146.6 |
41.0 |
| N1 |
C2 |
C1 |
H2 |
266.6 |
161.3 |
| H3 |
C2 |
N1 |
H4 |
240.0 |
118.7 |
| N2 |
C5 |
C4 |
H9 |
313.7 |
197.9 |
| N2 |
C5 |
C4 |
H10 |
193.7 |
79.1 |
| C4 |
C5 |
N2 |
H11 |
120.0 |
120.9 |
| C4 |
C5 |
N2 |
H12 |
240.0 |
239.3 |
| C5 |
N2 |
C1 |
H1 |
288.5 |
334.2 |
| C5 |
N2 |
C1 |
H2 |
168.5 |
213.9 |
| C5 |
N2 |
C8 |
C7 |
153.4 |
0.0 |
| H11 |
C5 |
N2 |
H12 |
120.0 |
118.4 |
| N2 |
C1 |
C2 |
H1 |
240.0 |
240.1 |
| N2 |
C1 |
C2 |
H2 |
120.0 |
119.8 |
| H1 |
C1 |
C2 |
H2 |
240.0 |
239.7 |
| C2 |
C1 |
N2 |
H1 |
120.0 |
119.9 |
| C2 |
C1 |
N2 |
H2 |
240.0 |
240.2 |
| H1 |
C1 |
N2 |
H2 |
120.0 |
120.3 |
| C8 |
N2 |
C5 |
H11 |
333.8 |
71.3 |
| C8 |
N2 |
C5 |
H12 |
213.8 |
313.0 |
| C8 |
N2 |
C1 |
H1 |
103.6 |
100.4 |
| C8 |
N2 |
C1 |
H2 |
343.6 |
340.1 |
| N2 |
C8 |
C7 |
H14 |
359.1 |
359.9 |
| C9 |
C8 |
C7 |
H14 |
180.1 |
180.0 |
| C9 |
C10 |
C6 |
H13 |
179.5 |
179.7 |
| N3 |
C6 |
C10 |
H13 |
180.0 |
179.8 |
| N2 |
C8 |
C7 |
N3 |
179.1 |
180.0 |
| C7 |
N3 |
C6 |
H13 |
180.7 |
180.0 |
| C10 |
C6 |
N3 |
H13 |
180.0 |
180.2 |
| C2 |
C1 |
H1 |
H2 |
117.6 |
120.3 |
| N2 |
C1 |
H1 |
H2 |
242.5 |
239.8 |
| C2 |
C1 |
H2 |
H1 |
242.4 |
239.7 |
| N2 |
C1 |
H2 |
H1 |
117.6 |
120.2 |
| N1 |
C2 |
H3 |
H4 |
117.7 |
241.3 |
| H3 |
C2 |
C1 |
H1 |
26.6 |
161.7 |
| H3 |
C2 |
C1 |
H2 |
146.6 |
282.0 |
| N1 |
C2 |
H4 |
H3 |
242.3 |
118.8 |
| H4 |
C2 |
C1 |
H1 |
266.6 |
280.4 |
| H4 |
C2 |
C1 |
H2 |
26.6 |
40.7 |
| H5 |
N1 |
C2 |
H3 |
276.5 |
174.9 |
| H5 |
N1 |
C2 |
H4 |
36.5 |
56.2 |
| H7 |
C3 |
C4 |
C5 |
59.9 |
332.9 |
| C4 |
C3 |
H7 |
H8 |
119.0 |
239.5 |
| H7 |
C3 |
C4 |
H9 |
179.9 |
93.5 |
| H7 |
C3 |
C4 |
H10 |
299.9 |
212.2 |
| H7 |
C3 |
N1 |
H5 |
80.1 |
166.0 |
| H8 |
C3 |
C4 |
C5 |
179.9 |
212.2 |
| C4 |
C3 |
H8 |
H7 |
240.9 |
120.5 |
| H8 |
C3 |
C4 |
H9 |
299.9 |
332.8 |
| H8 |
C3 |
C4 |
H10 |
59.9 |
91.5 |
| H8 |
C3 |
N1 |
H5 |
320.2 |
286.6 |
| C3 |
C4 |
H9 |
C5 |
237.8 |
237.5 |
| H9 |
C4 |
C3 |
H7 |
179.9 |
93.5 |
| H9 |
C4 |
C3 |
H8 |
299.9 |
332.8 |
| C3 |
C4 |
H9 |
H10 |
118.9 |
118.7 |
| H9 |
C4 |
C5 |
N2 |
313.7 |
197.9 |
| C5 |
C4 |
H9 |
H10 |
241.1 |
241.3 |
| H9 |
C4 |
C5 |
H11 |
73.6 |
318.7 |
| H9 |
C4 |
C5 |
H12 |
193.7 |
77.2 |
| C3 |
C4 |
H10 |
C5 |
122.2 |
122.6 |
| H10 |
C4 |
C3 |
H7 |
299.9 |
212.2 |
| H10 |
C4 |
C3 |
H8 |
59.9 |
91.5 |
| C3 |
C4 |
H10 |
H9 |
241.1 |
241.3 |
| H10 |
C4 |
C5 |
N2 |
193.7 |
79.1 |
| C5 |
C4 |
H10 |
H9 |
118.9 |
118.7 |
| H10 |
C4 |
C5 |
H11 |
313.6 |
200.0 |
| H10 |
C4 |
C5 |
H12 |
73.7 |
318.5 |
| C4 |
C5 |
H11 |
N2 |
238.0 |
236.9 |
| H11 |
C5 |
C4 |
H9 |
73.6 |
318.7 |
| H11 |
C5 |
C4 |
H10 |
313.6 |
200.0 |
| C4 |
C5 |
H11 |
H12 |
119.0 |
118.6 |
| H11 |
C5 |
N2 |
C8 |
333.8 |
71.3 |
| N2 |
C5 |
H11 |
H12 |
241.0 |
241.7 |
| C4 |
C5 |
H12 |
N2 |
122.0 |
123.0 |
| H12 |
C5 |
C4 |
H9 |
193.7 |
77.2 |
| H12 |
C5 |
C4 |
H10 |
73.7 |
318.5 |
| C4 |
C5 |
H12 |
H11 |
241.0 |
241.4 |
| H12 |
C5 |
N2 |
C8 |
213.8 |
313.0 |
| N2 |
C5 |
H12 |
H11 |
119.0 |
118.4 |
| H15 |
C9 |
C10 |
H16 |
0.1 |
359.8 |
| H16 |
C10 |
C9 |
H15 |
0.1 |
359.8 |
| H16 |
C10 |
C6 |
H13 |
359.5 |
0.2 |