PDB Chemical Component 09M

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 09M

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C17	C16	1.495	1.507
C16	N1	1.334	1.318
C16	C15	1.396	1.387
N1	C3	1.331	1.319
O6	C15	1.328	1.359
C15	C4	1.380	1.391
C3	C2	1.369	1.382
C4	C2	1.390	1.386
C4	C5	1.511	1.507
C2	C1	1.499	1.507
O3	C1	1.313	1.429
O3	P	1.600	1.610
C5	N2	1.449	1.465
O2	P	1.501	1.480
N2	C6	1.324	1.398
O4	C7	1.211	1.218
P	O7	1.501	1.610
P	O1	1.499	1.610
C6	C7	1.422	1.463
C6	C8	1.315	1.361
C7	N3	1.324	1.344
C8	C9	1.406	1.463
N3	O5	1.388	1.416
N3	C10	1.343	1.379
C9	C10	1.396	1.406
C9	C14	1.389	1.400
C10	C11	1.383	1.392
C14	C13	1.371	1.366
C11	C12	1.377	1.378
C13	C12	1.366	1.387
N2	H1	1.000	0.970
C13	H2	1.080	1.080
C8	H3	1.080	1.080
O7	H4	0.950	0.967
O1	H5	0.950	0.967
C1	H6	1.100	1.090
C1	H7	1.100	1.090
C3	H8	1.080	1.080
C17	H9	1.100	1.090
C17	H10	1.100	1.089
C17	H11	1.100	1.090
O6	H12	0.950	0.968
C5	H13	1.100	1.090
C5	H14	1.100	1.091
C14	H15	1.080	1.080
C12	H16	1.080	1.080
C11	H17	1.080	1.080
O5	H18	0.950	0.967

Bond Angles for 09M

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C17	C16	C15	120.6	119.6
N1	C16	C15	121.7	120.7
C16	N1	C3	118.0	121.8
N1	C3	H8	117.8	119.6
C15	C4	C5	119.7	120.8
C2	C4	C5	121.8	120.8
C4	C2	C1	120.1	120.4
C4	C5	N2	111.1	109.5
C4	C5	H13	108.9	109.5
C4	C5	H14	108.9	109.5
C2	C1	H6	112.9	109.5
C2	C1	H7	112.9	109.5
O3	C1	H6	112.9	109.5
O3	C1	H7	112.9	109.5
C5	N2	H1	105.9	120.0
N2	C6	C7	120.7	120.2
N2	C6	C8	119.5	120.3
C6	N2	H1	105.8	120.0
P	O7	H4	109.5	114.1
P	O1	H5	109.5	114.0
C6	C8	C9	121.6	118.7
C6	C8	H3	119.2	120.6
C7	N3	O5	116.7	119.4
C7	N3	C10	126.3	121.2
C8	C9	C10	119.0	119.5
C8	C9	C14	123.1	120.6
C10	N3	O5	116.8	119.4
N3	O5	H18	109.5	114.0
N3	C10	C9	116.4	120.2
N3	C10	C11	122.4	120.4
C14	C9	C10	117.9	119.8
C9	C10	C11	121.2	119.3
C9	C14	C13	120.7	119.8
C9	C14	H15	119.6	120.1
C10	C11	H17	120.5	120.1
C14	C13	C12	120.5	120.5
C14	C13	H2	119.7	119.7
C11	C12	H16	119.7	119.7
C12	C13	H2	119.8	119.7
C13	C12	H16	119.7	119.7
H6	C1	H7	105.8	109.5
H9	C17	H10	109.4	109.5
H9	C17	H11	109.4	109.4
H10	C17	H11	109.5	109.5
H13	C5	H14	110.0	109.5

Torsion Angles for 09M

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N1	C16	C17	C15	176.0	179.7
C17	C16	N1	C15	184.0	180.3
C16	N1	C3	H8	180.3	180.0
C15	C16	N1	C3	2.0	359.6
C16	C15	C4	C5	183.2	179.7
C3	N1	C16	C15	2.0	359.6
O6	C15	C4	C5	6.6	0.3
C2	C4	C15	C5	178.8	179.7
C15	C4	C5	N2	320.6	269.7
C15	C4	C5	H13	80.6	29.7
C15	C4	C5	H14	200.6	149.7
C16	N1	C3	C2	0.3	0.1
C3	C2	C4	C5	178.9	180.0
C3	C2	C1	H6	49.5	240.0
C3	C2	C1	H7	169.5	120.0
C15	C4	C2	C5	181.2	180.3
C2	C4	C5	N2	141.8	90.0
C2	C4	C5	H13	261.8	210.0
C2	C4	C5	H14	21.8	330.0
C4	C2	C1	H6	226.3	60.0
C4	C2	C1	H7	346.2	300.0
C5	C4	C2	C1	2.1	0.1
C4	C5	N2	H1	331.1	0.0
H13	C5	C4	H14	240.0	240.0
C1	C2	C4	C5	2.1	0.1
O3	C1	C2	H6	240.0	120.0
O3	C1	C2	H7	120.0	240.0
H6	C1	C2	H7	240.0	120.0
C4	C2	C1	O3	106.3	180.0
C2	C1	O3	H6	120.0	240.0
C2	C1	O3	H7	240.0	120.0
H6	C1	O3	H7	120.0	240.0
O3	P	O7	H4	113.3	180.0
O3	P	O1	H5	247.2	60.0
C4	C5	N2	H13	120.0	120.0
C4	C5	N2	H14	240.0	240.0
C6	N2	C5	H1	240.0	180.0
O2	P	O7	H4	360.0	60.0
O2	P	O1	H5	0.0	180.0
C4	C5	N2	C6	211.0	180.0
C5	N2	C6	H1	120.0	180.0
N2	C6	C8	C9	173.6	180.1
N2	C6	C8	H3	353.6	0.0
O1	P	O7	H4	229.0	300.0
N2	C6	C7	C8	184.4	179.9
C7	C6	N2	H1	59.3	180.0
C6	C7	N3	O5	172.1	180.0
C6	C7	N3	C10	356.5	0.3
N2	C6	C8	C7	175.7	180.1
C8	C6	N2	H1	243.6	359.9
C6	C8	C9	C10	359.8	359.7
C6	C8	C9	C14	181.3	180.3
C10	N3	C7	O5	184.4	180.3
C7	N3	O5	H18	5.4	0.3
C7	N3	C10	C9	1.3	359.4
C7	N3	C10	C11	180.3	179.8
C6	C8	C9	H3	180.0	180.0
N3	C10	C9	C8	0.7	0.6
C14	C9	C8	C10	181.5	180.6
C8	C9	C10	C11	181.6	180.2
C8	C9	C14	C13	177.7	179.5
C8	C9	C14	H15	357.7	359.4
C7	N3	O5	C10	184.0	180.3
O5	N3	C10	C9	185.7	179.7
O5	N3	C10	C11	4.8	0.1
C7	N3	C10	O5	175.6	179.7
C8	C9	C10	N3	0.7	0.6
C10	N3	O5	H18	181.5	179.9
C14	C9	C10	N3	179.3	180.0
C9	C10	N3	C11	181.0	179.6
N3	C10	C11	H17	1.3	359.9
C8	C9	C10	C14	181.4	180.6
C9	C10	N3	O5	185.7	179.7
N3	C10	C9	C11	179.0	180.4
C10	C9	C14	C13	359.2	0.1
C10	C9	C14	H15	179.2	180.0
C9	C10	C11	H17	180.3	180.3
C8	C9	C14	C10	178.5	179.4
N3	C10	C9	C14	179.3	180.0
C14	C9	C10	C11	0.2	359.6
C9	C14	C13	C12	0.8	0.2
C9	C14	C13	H2	180.8	179.9
C11	C10	N3	O5	4.8	0.1
N3	C10	C11	C9	181.0	179.6
C10	C11	C12	H16	179.6	180.0
C13	C14	C9	C10	359.2	0.1
C9	C14	C13	H15	180.0	179.9
C12	C13	C14	H2	180.0	180.3
C14	C13	C12	H16	179.9	179.7
N3	C10	C11	C12	181.4	180.0
C9	C10	C11	C12	0.3	0.4
C11	C12	C13	H2	179.8	180.1
C13	C12	C11	H16	180.0	179.9
C14	C13	C12	H2	180.0	179.7
C11	C12	C13	H16	180.0	180.1
H1	N2	C6	C7	59.3	180.0
H1	N2	C6	C8	243.6	359.9
C14	C13	H2	C12	180.0	180.3
H2	C13	C12	H16	359.8	0.0
C6	C8	H3	C9	180.0	180.0
H3	C8	C9	C10	179.8	179.8
H3	C8	C9	C14	1.3	0.3
C2	C1	H6	H7	124.0	240.0
O3	C1	H6	H7	236.0	120.0
C2	C1	H7	H6	236.0	120.0
O3	C1	H7	H6	124.0	240.0
H9	C17	C16	C15	184.0	270.2
H10	C17	H9	H11	120.0	120.0
H10	C17	C16	C15	304.0	30.3
H9	C17	H10	H11	240.0	240.0
H11	C17	C16	C15	64.0	150.3
H9	C17	H11	H10	120.0	120.0
C4	C5	H13	N2	238.6	240.0
C4	C5	H13	H14	119.3	120.0
H13	C5	N2	H1	211.1	240.0
C4	C5	H14	N2	121.4	120.0
C4	C5	H14	H13	240.7	240.0
H14	C5	N2	H1	91.1	120.0
H15	C14	C9	C10	179.2	180.0
C9	C14	H15	C13	180.0	180.1
H15	C14	C13	C12	180.8	180.3
H15	C14	C13	H2	0.8	360.0
H16	C12	C13	H2	359.8	0.0
H17	C11	C12	H16	359.6	0.1