PDB Chemical Component 09J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 09J
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C8 |
C7 |
1.533 |
1.531 |
| F1 |
C19 |
1.341 |
1.351 |
| C18 |
C19 |
1.394 |
1.382 |
| C18 |
C17 |
1.393 |
1.384 |
| C19 |
C6 |
1.395 |
1.399 |
| C17 |
C16 |
1.391 |
1.383 |
| C20 |
C14 |
1.531 |
1.508 |
| C7 |
N4 |
1.492 |
1.465 |
| O1 |
C3 |
1.233 |
1.217 |
| N4 |
C3 |
1.439 |
1.348 |
| N4 |
N3 |
1.251 |
1.397 |
| C6 |
C2 |
1.405 |
1.476 |
| C6 |
C15 |
1.403 |
1.397 |
| C16 |
C15 |
1.398 |
1.381 |
| C3 |
C4 |
1.399 |
1.473 |
| C14 |
C13 |
1.398 |
1.380 |
| C14 |
C9 |
1.405 |
1.396 |
| N3 |
C2 |
1.419 |
1.364 |
| N3 |
C1 |
1.410 |
1.372 |
| C2 |
N2 |
1.330 |
1.322 |
| C13 |
C12 |
1.397 |
1.382 |
| C15 |
CL1 |
1.729 |
1.736 |
| C4 |
C9 |
1.407 |
1.480 |
| C4 |
C5 |
1.392 |
1.367 |
| C9 |
C10 |
1.397 |
1.393 |
| C1 |
C5 |
1.397 |
1.416 |
| C1 |
N1 |
1.335 |
1.322 |
| N2 |
N1 |
1.234 |
1.286 |
| C12 |
C11 |
1.397 |
1.396 |
| C10 |
C11 |
1.396 |
1.394 |
| C11 |
C21 |
1.544 |
1.478 |
| C21 |
N5 |
1.343 |
1.348 |
| C21 |
O2 |
1.229 |
1.216 |
| N5 |
C22 |
1.484 |
1.465 |
| C22 |
C23 |
1.534 |
1.530 |
| C22 |
C24 |
1.533 |
1.531 |
| C23 |
C24 |
1.527 |
1.531 |
| C23 |
H1 |
1.100 |
1.089 |
| C23 |
H2 |
1.101 |
1.090 |
| C24 |
H3 |
1.100 |
1.089 |
| C24 |
H4 |
1.100 |
1.089 |
| C22 |
H5 |
1.100 |
1.090 |
| N5 |
H6 |
1.000 |
0.970 |
| C10 |
H7 |
1.080 |
1.080 |
| C12 |
H8 |
1.080 |
1.079 |
| C13 |
H9 |
1.080 |
1.080 |
| C20 |
H10 |
1.100 |
1.090 |
| C20 |
H11 |
1.100 |
1.090 |
| C20 |
H12 |
1.101 |
1.090 |
| C5 |
H13 |
1.080 |
1.079 |
| C7 |
H14 |
1.100 |
1.090 |
| C7 |
H15 |
1.100 |
1.090 |
| C8 |
H16 |
1.100 |
1.090 |
| C8 |
H17 |
1.100 |
1.090 |
| C8 |
H18 |
1.101 |
1.089 |
| C16 |
H19 |
1.080 |
1.080 |
| C17 |
H20 |
1.080 |
1.080 |
| C18 |
H21 |
1.080 |
1.080 |
Bond Angles for 09J
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C7 |
H14 |
108.8 |
109.5 |
| C8 |
C7 |
H15 |
108.8 |
109.4 |
| C19 |
C18 |
H21 |
119.9 |
120.0 |
| C18 |
C17 |
H20 |
120.3 |
119.8 |
| C17 |
C16 |
H19 |
119.9 |
119.9 |
| C20 |
C14 |
C9 |
122.1 |
119.9 |
| C7 |
N4 |
N3 |
120.9 |
119.8 |
| N4 |
N3 |
C2 |
136.9 |
133.0 |
| N4 |
N3 |
C1 |
120.7 |
121.0 |
| C6 |
C15 |
CL1 |
121.4 |
120.1 |
| C14 |
C13 |
H9 |
119.6 |
119.9 |
| C1 |
N3 |
C2 |
102.4 |
106.0 |
| N3 |
C2 |
N2 |
107.4 |
107.1 |
| N3 |
C1 |
N1 |
107.5 |
107.1 |
| C13 |
C12 |
H8 |
120.0 |
119.9 |
| C4 |
C5 |
H13 |
120.5 |
120.2 |
| C9 |
C10 |
H7 |
119.1 |
120.1 |
| C1 |
C5 |
H13 |
120.6 |
120.2 |
| C21 |
N5 |
H6 |
118.0 |
120.0 |
| N5 |
C22 |
H5 |
93.4 |
115.6 |
| C22 |
C23 |
H1 |
130.8 |
117.5 |
| C22 |
C23 |
H2 |
130.8 |
117.5 |
| C22 |
C24 |
H3 |
130.8 |
117.5 |
| C22 |
C24 |
H4 |
130.8 |
117.5 |
| C24 |
C23 |
H1 |
130.8 |
117.5 |
| C24 |
C23 |
H2 |
130.8 |
117.4 |
| C23 |
C24 |
H3 |
130.8 |
117.5 |
| C23 |
C24 |
H4 |
130.8 |
117.5 |
| H1 |
C23 |
H2 |
81.9 |
115.6 |
| H3 |
C24 |
H4 |
81.9 |
115.6 |
| H10 |
C20 |
H11 |
109.5 |
109.5 |
| H10 |
C20 |
H12 |
109.5 |
109.5 |
| H11 |
C20 |
H12 |
109.5 |
109.5 |
| H14 |
C7 |
H15 |
110.2 |
109.5 |
| H16 |
C8 |
H17 |
109.5 |
109.5 |
| H16 |
C8 |
H18 |
109.4 |
109.5 |
| H17 |
C8 |
H18 |
109.5 |
109.5 |
Torsion Angles for 09J
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C8 |
C7 |
N4 |
N3 |
266.5 |
275.1 |
| H14 |
C7 |
C8 |
H15 |
240.0 |
120.0 |
| F1 |
C19 |
C18 |
H21 |
0.3 |
359.4 |
| C19 |
C18 |
C17 |
H20 |
180.3 |
179.8 |
| C18 |
C17 |
C16 |
H19 |
179.7 |
180.0 |
| C20 |
C14 |
C13 |
H9 |
359.8 |
0.0 |
| C7 |
N4 |
N3 |
C2 |
0.4 |
0.0 |
| C7 |
N4 |
N3 |
C1 |
180.1 |
180.3 |
| C1 |
N3 |
N4 |
C2 |
179.6 |
180.2 |
| N4 |
N3 |
C2 |
N2 |
179.4 |
179.9 |
| N4 |
N3 |
C1 |
N1 |
180.4 |
180.0 |
| C3 |
C4 |
C5 |
H13 |
181.1 |
180.2 |
| C14 |
C13 |
C12 |
H8 |
180.2 |
180.0 |
| C9 |
C14 |
C13 |
H9 |
179.8 |
180.3 |
| C14 |
C9 |
C10 |
H7 |
179.8 |
180.0 |
| N4 |
N3 |
C2 |
C1 |
179.7 |
180.2 |
| C2 |
N3 |
C1 |
N1 |
0.1 |
0.2 |
| N4 |
N3 |
C1 |
C2 |
180.3 |
179.8 |
| C1 |
N3 |
C2 |
N2 |
359.7 |
359.7 |
| N3 |
C1 |
C5 |
H13 |
179.4 |
180.0 |
| C4 |
C9 |
C10 |
H7 |
359.9 |
359.8 |
| C1 |
C5 |
C4 |
H13 |
180.0 |
180.1 |
| C4 |
C5 |
C1 |
H13 |
180.0 |
179.9 |
| N1 |
C1 |
N3 |
C2 |
0.1 |
0.2 |
| N1 |
C1 |
C5 |
H13 |
359.4 |
359.7 |
| N3 |
C2 |
N2 |
N1 |
0.4 |
0.3 |
| C11 |
C21 |
N5 |
H6 |
358.7 |
360.0 |
| C21 |
N5 |
C22 |
H5 |
276.0 |
350.7 |
| O2 |
C21 |
N5 |
H6 |
178.9 |
179.9 |
| N5 |
C22 |
C23 |
H1 |
12.7 |
145.0 |
| N5 |
C22 |
C23 |
H2 |
132.7 |
359.9 |
| N5 |
C22 |
C24 |
H3 |
226.9 |
359.9 |
| N5 |
C22 |
C24 |
H4 |
346.9 |
214.9 |
| C24 |
C23 |
C22 |
H1 |
240.0 |
107.5 |
| C24 |
C23 |
C22 |
H2 |
120.0 |
252.6 |
| C22 |
C23 |
C24 |
H3 |
240.0 |
107.5 |
| C22 |
C23 |
C24 |
H4 |
120.0 |
252.6 |
| H1 |
C23 |
C22 |
H2 |
240.0 |
145.1 |
| C24 |
C22 |
C23 |
H1 |
120.0 |
252.5 |
| C24 |
C22 |
C23 |
H2 |
240.0 |
107.4 |
| C22 |
C24 |
C23 |
H1 |
240.0 |
107.5 |
| C22 |
C24 |
C23 |
H2 |
120.0 |
252.5 |
| C23 |
C24 |
C22 |
H3 |
240.0 |
107.5 |
| C23 |
C24 |
C22 |
H4 |
120.0 |
252.5 |
| H3 |
C24 |
C22 |
H4 |
240.0 |
145.0 |
| C22 |
C23 |
C24 |
H1 |
120.0 |
252.5 |
| C22 |
C23 |
C24 |
H2 |
240.0 |
107.5 |
| C22 |
C24 |
C23 |
H3 |
120.0 |
252.5 |
| C22 |
C24 |
C23 |
H4 |
240.0 |
107.4 |
| H1 |
C23 |
C24 |
H2 |
120.0 |
215.1 |
| H3 |
C24 |
C23 |
H4 |
120.0 |
214.9 |
| C22 |
C23 |
H1 |
H2 |
138.6 |
214.2 |
| C24 |
C23 |
H1 |
H2 |
221.4 |
145.6 |
| H1 |
C23 |
C24 |
H3 |
120.0 |
215.0 |
| H1 |
C23 |
C24 |
H4 |
360.0 |
0.1 |
| C22 |
C23 |
H2 |
H1 |
221.4 |
145.8 |
| C24 |
C23 |
H2 |
H1 |
138.6 |
214.4 |
| H2 |
C23 |
C24 |
H3 |
0.0 |
359.9 |
| H2 |
C23 |
C24 |
H4 |
240.0 |
145.0 |
| C22 |
C24 |
H3 |
H4 |
138.5 |
214.4 |
| H3 |
C24 |
C23 |
H1 |
120.0 |
215.0 |
| H3 |
C24 |
C23 |
H2 |
0.0 |
359.9 |
| C23 |
C24 |
H3 |
H4 |
221.4 |
145.8 |
| C22 |
C24 |
H4 |
H3 |
221.5 |
145.6 |
| H4 |
C24 |
C23 |
H1 |
360.0 |
0.1 |
| H4 |
C24 |
C23 |
H2 |
240.0 |
145.0 |
| C23 |
C24 |
H4 |
H3 |
138.5 |
214.2 |
| H5 |
C22 |
C23 |
H1 |
245.1 |
0.0 |
| H5 |
C22 |
C23 |
H2 |
5.1 |
214.9 |
| H5 |
C22 |
C24 |
H3 |
354.5 |
145.0 |
| H5 |
C22 |
C24 |
H4 |
114.5 |
0.0 |
| H6 |
N5 |
C22 |
H5 |
96.0 |
170.7 |
| H9 |
C13 |
C12 |
H8 |
0.2 |
360.0 |
| H10 |
C20 |
C14 |
C9 |
270.0 |
269.7 |
| H11 |
C20 |
H10 |
H12 |
120.0 |
120.1 |
| H11 |
C20 |
C14 |
C9 |
29.9 |
29.7 |
| H10 |
C20 |
H11 |
H12 |
240.0 |
239.9 |
| H12 |
C20 |
C14 |
C9 |
150.0 |
149.7 |
| H10 |
C20 |
H12 |
H11 |
120.0 |
120.1 |
| C8 |
C7 |
H14 |
H15 |
119.1 |
240.0 |
| H14 |
C7 |
N4 |
N3 |
146.5 |
35.1 |
| C8 |
C7 |
H15 |
H14 |
240.9 |
120.0 |
| H15 |
C7 |
N4 |
N3 |
26.5 |
155.1 |
| H16 |
C8 |
C7 |
H14 |
300.0 |
60.0 |
| H16 |
C8 |
C7 |
H15 |
60.0 |
300.1 |
| H17 |
C8 |
H16 |
H18 |
120.0 |
120.1 |
| H17 |
C8 |
C7 |
H14 |
60.0 |
180.0 |
| H17 |
C8 |
C7 |
H15 |
180.0 |
60.0 |
| H16 |
C8 |
H17 |
H18 |
240.0 |
239.9 |
| H18 |
C8 |
C7 |
H14 |
180.0 |
300.0 |
| H18 |
C8 |
C7 |
H15 |
300.0 |
180.0 |
| H16 |
C8 |
H18 |
H17 |
120.0 |
120.0 |
| H20 |
C17 |
C16 |
H19 |
359.7 |
359.9 |
| H21 |
C18 |
C17 |
H20 |
0.2 |
0.4 |