PDB Chemical Component 09F
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 09F
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N10 |
C7 |
1.486 |
1.487 |
| N10 |
C13 |
1.490 |
1.481 |
| C3 |
C5 |
1.379 |
1.384 |
| C3 |
C1 |
1.372 |
1.377 |
| C5 |
C8 |
1.384 |
1.384 |
| C7 |
C4 |
1.481 |
1.552 |
| C7 |
C9 |
1.505 |
1.507 |
| C13 |
C2 |
1.514 |
1.531 |
| C4 |
C2 |
1.507 |
1.536 |
| C1 |
C2 |
1.482 |
1.501 |
| C1 |
C17 |
1.363 |
1.392 |
| C2 |
C14 |
1.515 |
1.504 |
| C8 |
C6 |
1.374 |
1.379 |
| C9 |
O11 |
1.356 |
1.342 |
| C9 |
O12 |
1.223 |
1.208 |
| O11 |
C18 |
1.452 |
1.453 |
| C23 |
C18 |
1.514 |
1.530 |
| C23 |
C22 |
1.513 |
1.530 |
| C17 |
C6 |
1.370 |
1.393 |
| C17 |
N16 |
1.378 |
1.397 |
| C18 |
C19 |
1.515 |
1.530 |
| C18 |
C24 |
1.459 |
1.472 |
| C14 |
N16 |
1.378 |
1.347 |
| C14 |
O15 |
1.225 |
1.213 |
| C19 |
C20 |
1.516 |
1.530 |
| C22 |
C21 |
1.509 |
1.529 |
| C21 |
C20 |
1.510 |
1.531 |
| C24 |
N25 |
1.160 |
1.136 |
| C5 |
H1 |
1.080 |
1.079 |
| C8 |
H2 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.080 |
| C6 |
H4 |
1.080 |
1.080 |
| C21 |
H5 |
1.100 |
1.090 |
| C21 |
H6 |
1.100 |
1.091 |
| C20 |
H7 |
1.100 |
1.089 |
| C20 |
H8 |
1.100 |
1.090 |
| C22 |
H9 |
1.100 |
1.090 |
| C22 |
H10 |
1.100 |
1.090 |
| C19 |
H11 |
1.100 |
1.091 |
| C19 |
H12 |
1.100 |
1.089 |
| C23 |
H13 |
1.100 |
1.091 |
| C23 |
H14 |
1.100 |
1.089 |
| C4 |
H15 |
1.100 |
1.090 |
| C4 |
H16 |
1.100 |
1.090 |
| C13 |
H17 |
1.100 |
1.090 |
| C13 |
H18 |
1.100 |
1.090 |
| C7 |
H19 |
1.100 |
1.089 |
| N16 |
H20 |
1.000 |
0.970 |
| N10 |
H21 |
1.000 |
1.009 |
Bond Angles for 09F
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N10 |
C7 |
H19 |
111.0 |
110.8 |
| N10 |
C13 |
H17 |
110.9 |
110.0 |
| N10 |
C13 |
H18 |
110.8 |
110.1 |
| C3 |
C5 |
H1 |
119.4 |
120.1 |
| C3 |
C1 |
C2 |
129.5 |
133.5 |
| C3 |
C1 |
C17 |
120.6 |
120.6 |
| C1 |
C3 |
H3 |
121.2 |
120.0 |
| C5 |
C8 |
C6 |
121.1 |
120.3 |
| C8 |
C5 |
H1 |
119.4 |
120.1 |
| C5 |
C8 |
H2 |
119.5 |
119.8 |
| C7 |
C4 |
C2 |
105.7 |
102.7 |
| C7 |
C4 |
H15 |
110.7 |
110.7 |
| C7 |
C4 |
H16 |
110.7 |
110.9 |
| C7 |
C9 |
O11 |
109.1 |
120.0 |
| C7 |
C9 |
O12 |
124.3 |
120.1 |
| C4 |
C2 |
C13 |
106.3 |
106.1 |
| C1 |
C2 |
C13 |
113.1 |
111.7 |
| C2 |
C13 |
H17 |
110.8 |
110.0 |
| C2 |
C13 |
H18 |
110.8 |
110.0 |
| C1 |
C2 |
C4 |
113.5 |
111.4 |
| C2 |
C4 |
H15 |
110.7 |
110.8 |
| C2 |
C4 |
H16 |
110.7 |
110.8 |
| C17 |
C1 |
C2 |
109.9 |
105.9 |
| C1 |
C2 |
C14 |
101.4 |
105.1 |
| C1 |
C17 |
N16 |
110.3 |
110.2 |
| C2 |
C14 |
N16 |
108.5 |
106.7 |
| C2 |
C14 |
O15 |
125.3 |
126.7 |
| C6 |
C8 |
H2 |
119.5 |
119.9 |
| C8 |
C6 |
H4 |
121.7 |
119.9 |
| O12 |
C9 |
O11 |
126.3 |
120.0 |
| C9 |
O11 |
C18 |
116.6 |
117.0 |
| C18 |
C23 |
H13 |
108.9 |
109.5 |
| C18 |
C23 |
H14 |
108.9 |
109.5 |
| C23 |
C22 |
H9 |
108.9 |
109.5 |
| C23 |
C22 |
H10 |
108.9 |
109.4 |
| C17 |
C6 |
H4 |
121.7 |
119.9 |
| C17 |
N16 |
C14 |
109.9 |
112.1 |
| C17 |
N16 |
H20 |
125.1 |
123.9 |
| C18 |
C19 |
H11 |
108.6 |
109.5 |
| C18 |
C19 |
H12 |
108.6 |
109.5 |
| C18 |
C24 |
N25 |
179.2 |
180.0 |
| N16 |
C14 |
O15 |
126.2 |
126.6 |
| C14 |
N16 |
H20 |
125.1 |
124.0 |
| C19 |
C20 |
H7 |
109.5 |
109.5 |
| C19 |
C20 |
H8 |
109.4 |
109.5 |
| C22 |
C21 |
H5 |
109.1 |
109.5 |
| C22 |
C21 |
H6 |
109.1 |
109.5 |
| C20 |
C21 |
H5 |
109.1 |
109.5 |
| C20 |
C21 |
H6 |
109.1 |
109.4 |
| C21 |
C20 |
H7 |
109.4 |
109.5 |
| C21 |
C20 |
H8 |
109.5 |
109.5 |
| H5 |
C21 |
H6 |
109.8 |
109.5 |
| H7 |
C20 |
H8 |
109.5 |
109.4 |
| H9 |
C22 |
H10 |
110.0 |
109.4 |
| H11 |
C19 |
H12 |
110.4 |
109.5 |
| H13 |
C23 |
H14 |
110.0 |
109.5 |
| H15 |
C4 |
H16 |
108.2 |
110.7 |
| H17 |
C13 |
H18 |
108.1 |
110.0 |
Torsion Angles for 09F
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C7 |
N10 |
C13 |
H17 |
109.2 |
265.8 |
| C7 |
N10 |
C13 |
H18 |
229.2 |
144.5 |
| N10 |
C7 |
C4 |
H15 |
88.6 |
155.0 |
| N10 |
C7 |
C4 |
H16 |
208.7 |
278.2 |
| N10 |
C7 |
C9 |
O11 |
356.6 |
193.9 |
| N10 |
C7 |
C9 |
O12 |
182.2 |
13.9 |
| C2 |
C13 |
N10 |
H17 |
240.0 |
119.3 |
| C2 |
C13 |
N10 |
H18 |
120.0 |
240.7 |
| H17 |
C13 |
N10 |
H18 |
240.0 |
121.4 |
| C3 |
C5 |
C8 |
C6 |
0.8 |
0.2 |
| C8 |
C5 |
C3 |
H1 |
180.0 |
179.7 |
| C3 |
C5 |
C8 |
H2 |
180.8 |
180.2 |
| C1 |
C3 |
C5 |
H1 |
179.1 |
180.3 |
| C3 |
C1 |
C2 |
C13 |
57.5 |
59.0 |
| C3 |
C1 |
C2 |
C4 |
296.3 |
300.6 |
| C17 |
C1 |
C3 |
C2 |
181.9 |
179.5 |
| C3 |
C1 |
C2 |
C14 |
180.1 |
180.1 |
| C3 |
C1 |
C17 |
N16 |
179.7 |
180.0 |
| C3 |
C5 |
C8 |
H1 |
180.0 |
180.3 |
| C6 |
C8 |
C5 |
H2 |
180.0 |
180.1 |
| C5 |
C8 |
C6 |
H4 |
179.3 |
180.0 |
| C4 |
C7 |
C9 |
O11 |
240.2 |
80.0 |
| C4 |
C7 |
C9 |
O12 |
65.8 |
260.0 |
| C7 |
C4 |
C2 |
C13 |
25.1 |
338.5 |
| C1 |
C2 |
C4 |
C7 |
150.0 |
100.2 |
| C2 |
C4 |
C7 |
H15 |
240.0 |
241.7 |
| C2 |
C4 |
C7 |
H16 |
120.0 |
118.5 |
| H15 |
C4 |
C7 |
H16 |
240.0 |
236.7 |
| O12 |
C9 |
C7 |
O11 |
185.6 |
180.0 |
| C7 |
C9 |
O11 |
C18 |
177.6 |
180.0 |
| N10 |
C13 |
C2 |
H17 |
120.0 |
240.7 |
| N10 |
C13 |
C2 |
H18 |
240.0 |
119.4 |
| C1 |
C2 |
C13 |
C4 |
234.8 |
238.5 |
| C13 |
C2 |
C4 |
H15 |
265.1 |
220.3 |
| C13 |
C2 |
C4 |
H16 |
145.0 |
97.1 |
| C17 |
C1 |
C2 |
C13 |
235.8 |
239.5 |
| C1 |
C2 |
C13 |
C14 |
115.2 |
117.3 |
| C13 |
C2 |
C14 |
N16 |
123.3 |
120.7 |
| C13 |
C2 |
C14 |
O15 |
302.1 |
300.8 |
| H17 |
C13 |
C2 |
H18 |
120.0 |
238.7 |
| C7 |
C4 |
C2 |
H15 |
120.0 |
118.2 |
| C7 |
C4 |
C2 |
H16 |
240.0 |
241.5 |
| C1 |
C2 |
C4 |
C13 |
124.9 |
121.7 |
| C4 |
C2 |
C13 |
H17 |
231.3 |
117.9 |
| C4 |
C2 |
C13 |
H18 |
111.3 |
239.2 |
| C17 |
C1 |
C2 |
C4 |
114.6 |
121.1 |
| C1 |
C2 |
C4 |
C14 |
248.0 |
243.1 |
| C4 |
C2 |
C14 |
N16 |
241.6 |
238.9 |
| C4 |
C2 |
C14 |
O15 |
60.5 |
59.0 |
| H15 |
C4 |
C2 |
H16 |
120.0 |
123.2 |
| C3 |
C1 |
C2 |
C17 |
181.8 |
179.5 |
| C2 |
C1 |
C3 |
H3 |
359.2 |
0.1 |
| C7 |
C4 |
C2 |
C1 |
150.0 |
100.2 |
| C4 |
C2 |
C1 |
C13 |
238.8 |
241.6 |
| C1 |
C2 |
C13 |
H17 |
106.1 |
356.4 |
| C1 |
C2 |
C13 |
H18 |
346.1 |
117.8 |
| C1 |
C2 |
C4 |
H15 |
30.0 |
342.0 |
| C1 |
C2 |
C4 |
H16 |
269.9 |
218.7 |
| C2 |
C1 |
C17 |
N16 |
1.3 |
359.6 |
| C1 |
C2 |
C14 |
N16 |
1.5 |
359.5 |
| C1 |
C2 |
C14 |
O15 |
180.3 |
179.6 |
| C3 |
C1 |
C17 |
C2 |
178.4 |
180.4 |
| C17 |
C1 |
C3 |
H3 |
181.1 |
179.5 |
| C17 |
C1 |
C2 |
C14 |
358.4 |
0.5 |
| C1 |
C17 |
C6 |
H4 |
181.0 |
179.5 |
| C1 |
C17 |
N16 |
C14 |
359.7 |
0.1 |
| C1 |
C17 |
N16 |
H20 |
179.7 |
180.0 |
| C1 |
C2 |
C14 |
C13 |
238.1 |
238.8 |
| C1 |
C2 |
C14 |
C4 |
119.8 |
120.6 |
| C17 |
N16 |
C14 |
C2 |
359.2 |
0.2 |
| N16 |
C14 |
C2 |
O15 |
181.2 |
179.9 |
| C2 |
C14 |
N16 |
H20 |
179.2 |
180.3 |
| C6 |
C8 |
C5 |
H1 |
180.8 |
179.9 |
| C5 |
C8 |
C6 |
H2 |
180.0 |
179.9 |
| C17 |
C6 |
C8 |
H4 |
180.0 |
180.1 |
| C7 |
C9 |
O11 |
O12 |
185.7 |
180.0 |
| C7 |
C9 |
O12 |
O11 |
173.4 |
180.0 |
| O12 |
C9 |
O11 |
C18 |
351.9 |
0.0 |
| O11 |
C18 |
C23 |
H13 |
292.4 |
60.0 |
| O11 |
C18 |
C23 |
H14 |
52.4 |
300.0 |
| O11 |
C18 |
C19 |
H11 |
304.4 |
60.0 |
| O11 |
C18 |
C19 |
H12 |
64.4 |
300.0 |
| C9 |
O11 |
C18 |
C23 |
81.8 |
180.0 |
| C18 |
C23 |
C22 |
H9 |
62.6 |
180.0 |
| C18 |
C23 |
C22 |
H10 |
182.6 |
60.1 |
| C23 |
C18 |
C19 |
H11 |
62.8 |
180.1 |
| C23 |
C18 |
C19 |
H12 |
182.8 |
60.0 |
| C23 |
C18 |
C24 |
N25 |
117.0 |
31.6 |
| H13 |
C23 |
C18 |
H14 |
240.0 |
120.0 |
| C23 |
C22 |
C21 |
H5 |
177.5 |
300.0 |
| C23 |
C22 |
C21 |
H6 |
297.6 |
179.9 |
| H9 |
C22 |
C23 |
H10 |
240.0 |
119.9 |
| C3 |
C1 |
C17 |
C6 |
358.8 |
0.8 |
| C17 |
C6 |
C8 |
H2 |
179.2 |
180.1 |
| C8 |
C6 |
C17 |
H4 |
180.0 |
179.9 |
| N16 |
C17 |
C1 |
C2 |
1.3 |
359.6 |
| C2 |
C14 |
N16 |
C17 |
359.2 |
0.2 |
| N16 |
C17 |
C6 |
H4 |
359.9 |
0.5 |
| C17 |
N16 |
C14 |
O15 |
180.4 |
180.1 |
| C14 |
N16 |
C17 |
H20 |
180.0 |
180.1 |
| C9 |
O11 |
C18 |
C19 |
199.7 |
300.0 |
| C19 |
C18 |
C24 |
N25 |
356.8 |
271.6 |
| C18 |
C19 |
C20 |
H7 |
177.8 |
300.0 |
| C18 |
C19 |
C20 |
H8 |
297.9 |
180.0 |
| H11 |
C19 |
C18 |
H12 |
240.0 |
120.1 |
| C2 |
C14 |
N16 |
O15 |
178.8 |
180.1 |
| C17 |
N16 |
C14 |
H20 |
180.0 |
179.9 |
| C2 |
C14 |
O15 |
N16 |
181.4 |
179.9 |
| O15 |
C14 |
N16 |
H20 |
0.4 |
0.2 |
| C19 |
C20 |
C21 |
H5 |
183.0 |
60.0 |
| C19 |
C20 |
C21 |
H6 |
63.0 |
180.0 |
| C21 |
C20 |
C19 |
H7 |
240.0 |
120.0 |
| C21 |
C20 |
C19 |
H8 |
120.0 |
240.0 |
| H7 |
C20 |
C19 |
H8 |
240.0 |
120.0 |
| C20 |
C21 |
C22 |
H5 |
240.0 |
120.0 |
| C20 |
C21 |
C22 |
H6 |
120.0 |
240.1 |
| C22 |
C21 |
C20 |
H7 |
183.0 |
60.0 |
| C22 |
C21 |
C20 |
H8 |
63.0 |
180.0 |
| H5 |
C21 |
C22 |
H6 |
240.0 |
120.0 |
| C19 |
C20 |
C21 |
H7 |
120.0 |
240.0 |
| C19 |
C20 |
C21 |
H8 |
240.0 |
120.0 |
| C22 |
C21 |
C20 |
H5 |
120.0 |
239.9 |
| C22 |
C21 |
C20 |
H6 |
240.0 |
120.0 |
| H5 |
C21 |
C20 |
H6 |
120.0 |
240.1 |
| H7 |
C20 |
C21 |
H8 |
120.0 |
240.0 |
| H1 |
C5 |
C8 |
C6 |
180.8 |
179.9 |
| H1 |
C5 |
C8 |
H2 |
0.8 |
359.9 |
| C5 |
C8 |
H2 |
C6 |
180.0 |
180.1 |
| H2 |
C8 |
C5 |
H1 |
0.8 |
359.9 |
| H2 |
C8 |
C6 |
H4 |
359.3 |
0.0 |
| H3 |
C3 |
C5 |
H1 |
359.1 |
0.3 |
| H3 |
C3 |
C1 |
C2 |
359.2 |
0.1 |
| H3 |
C3 |
C1 |
C17 |
181.1 |
179.5 |
| H4 |
C6 |
C8 |
H2 |
359.3 |
0.0 |
| C22 |
C21 |
H5 |
H6 |
119.6 |
239.9 |
| C20 |
C21 |
H5 |
H6 |
240.5 |
119.9 |
| H5 |
C21 |
C20 |
H7 |
63.0 |
180.1 |
| H5 |
C21 |
C20 |
H8 |
303.0 |
300.0 |
| C22 |
C21 |
H6 |
H5 |
240.4 |
120.1 |
| C20 |
C21 |
H6 |
H5 |
119.5 |
240.1 |
| H6 |
C21 |
C20 |
H7 |
303.0 |
300.0 |
| H6 |
C21 |
C20 |
H8 |
183.0 |
60.0 |
| C19 |
C20 |
H7 |
H8 |
120.0 |
240.0 |
| H7 |
C20 |
C21 |
H5 |
63.0 |
180.1 |
| H7 |
C20 |
C21 |
H6 |
303.0 |
300.0 |
| C21 |
C20 |
H7 |
H8 |
240.0 |
120.0 |
| C19 |
C20 |
H8 |
H7 |
240.0 |
120.1 |
| H8 |
C20 |
C21 |
H5 |
303.0 |
300.0 |
| H8 |
C20 |
C21 |
H6 |
183.0 |
60.0 |
| C21 |
C20 |
H8 |
H7 |
120.0 |
240.0 |
| C23 |
C22 |
H9 |
H10 |
119.3 |
240.1 |
| H9 |
C22 |
C21 |
H5 |
57.5 |
60.0 |
| H9 |
C22 |
C21 |
H6 |
177.5 |
300.0 |
| C23 |
C22 |
H10 |
H9 |
240.7 |
119.9 |
| H10 |
C22 |
C21 |
H5 |
297.5 |
180.0 |
| H10 |
C22 |
C21 |
H6 |
57.5 |
60.0 |
| C18 |
C19 |
H11 |
H12 |
118.9 |
239.9 |
| H11 |
C19 |
C20 |
H7 |
57.8 |
60.0 |
| H11 |
C19 |
C20 |
H8 |
177.9 |
300.0 |
| C18 |
C19 |
H12 |
H11 |
241.1 |
120.0 |
| H12 |
C19 |
C20 |
H7 |
297.9 |
180.0 |
| H12 |
C19 |
C20 |
H8 |
57.9 |
60.0 |
| C18 |
C23 |
H13 |
H14 |
119.3 |
240.0 |
| H13 |
C23 |
C22 |
H9 |
302.6 |
300.0 |
| H13 |
C23 |
C22 |
H10 |
62.6 |
180.0 |
| C18 |
C23 |
H14 |
H13 |
240.7 |
120.0 |
| H14 |
C23 |
C22 |
H9 |
182.6 |
60.0 |
| H14 |
C23 |
C22 |
H10 |
302.6 |
300.0 |
| C7 |
C4 |
H15 |
C2 |
243.0 |
246.8 |
| C7 |
C4 |
H15 |
H16 |
121.5 |
123.4 |
| H15 |
C4 |
C2 |
C13 |
265.1 |
220.3 |
| C2 |
C4 |
H15 |
H16 |
238.5 |
236.7 |
| C7 |
C4 |
H16 |
C2 |
116.9 |
113.4 |
| C7 |
C4 |
H16 |
H15 |
238.5 |
236.7 |
| H16 |
C4 |
C2 |
C13 |
145.0 |
97.1 |
| C2 |
C4 |
H16 |
H15 |
121.5 |
123.3 |
| N10 |
C13 |
H17 |
H18 |
121.7 |
238.6 |
| C2 |
C13 |
H17 |
H18 |
238.4 |
121.3 |
| N10 |
C13 |
H18 |
H17 |
238.3 |
121.4 |
| C2 |
C13 |
H18 |
H17 |
121.6 |
238.7 |
| H19 |
C7 |
C4 |
C2 |
207.7 |
278.1 |
| H19 |
C7 |
C4 |
H15 |
327.7 |
36.3 |
| H19 |
C7 |
C4 |
H16 |
87.7 |
159.6 |
| H19 |
C7 |
C9 |
O11 |
117.6 |
317.0 |
| H19 |
C7 |
C9 |
O12 |
303.2 |
137.0 |
| C17 |
N16 |
H20 |
C14 |
180.0 |
180.1 |
| H20 |
N16 |
C14 |
O15 |
0.4 |
0.2 |
| H21 |
N10 |
C7 |
H19 |
268.9 |
200.4 |
| H21 |
N10 |
C13 |
H17 |
349.2 |
145.3 |
| H21 |
N10 |
C13 |
H18 |
109.2 |
24.0 |