PDB Chemical Component 09A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 09A
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N10 |
C7 |
1.487 |
1.486 |
N10 |
C13 |
1.484 |
1.482 |
C3 |
C5 |
1.383 |
1.383 |
C3 |
C1 |
1.377 |
1.377 |
C5 |
C8 |
1.382 |
1.383 |
C7 |
C4 |
1.508 |
1.552 |
C7 |
C9 |
1.510 |
1.506 |
C13 |
C2 |
1.507 |
1.530 |
C4 |
C2 |
1.506 |
1.537 |
C1 |
C2 |
1.487 |
1.502 |
C1 |
C17 |
1.365 |
1.392 |
C9 |
O12 |
1.220 |
1.209 |
C9 |
O11 |
1.365 |
1.342 |
C2 |
C14 |
1.511 |
1.504 |
C8 |
C6 |
1.378 |
1.379 |
O11 |
C18 |
1.429 |
1.452 |
C24 |
C23 |
1.383 |
1.382 |
C24 |
C19 |
1.385 |
1.383 |
C23 |
C22 |
1.381 |
1.382 |
C17 |
C6 |
1.377 |
1.394 |
C17 |
N16 |
1.387 |
1.396 |
C18 |
C19 |
1.501 |
1.506 |
C19 |
C20 |
1.381 |
1.382 |
C14 |
N16 |
1.375 |
1.347 |
C14 |
O15 |
1.220 |
1.213 |
C22 |
C21 |
1.381 |
1.382 |
C20 |
C21 |
1.383 |
1.383 |
C22 |
H1 |
1.080 |
1.080 |
C5 |
H2 |
1.079 |
1.080 |
C21 |
H3 |
1.080 |
1.080 |
C23 |
H4 |
1.080 |
1.080 |
C8 |
H5 |
1.080 |
1.079 |
C3 |
H6 |
1.080 |
1.080 |
C20 |
H7 |
1.080 |
1.080 |
C24 |
H8 |
1.079 |
1.080 |
C6 |
H9 |
1.080 |
1.080 |
C4 |
H10 |
1.100 |
1.090 |
C4 |
H11 |
1.100 |
1.090 |
C13 |
H12 |
1.101 |
1.090 |
C13 |
H13 |
1.100 |
1.091 |
C7 |
H14 |
1.100 |
1.090 |
C18 |
H15 |
1.100 |
1.091 |
C18 |
H16 |
1.100 |
1.090 |
N16 |
H17 |
1.000 |
0.970 |
N10 |
H18 |
1.000 |
1.009 |
Bond Angles for 09A
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N10 |
C7 |
H14 |
114.0 |
110.8 |
N10 |
C13 |
H12 |
111.2 |
110.0 |
N10 |
C13 |
H13 |
111.2 |
110.0 |
C3 |
C5 |
H2 |
119.5 |
120.1 |
C3 |
C1 |
C2 |
130.2 |
133.6 |
C3 |
C1 |
C17 |
120.1 |
120.6 |
C1 |
C3 |
H6 |
120.9 |
120.0 |
C5 |
C8 |
C6 |
121.0 |
120.3 |
C8 |
C5 |
H2 |
119.5 |
120.0 |
C5 |
C8 |
H5 |
119.5 |
119.9 |
C7 |
C4 |
C2 |
106.8 |
102.7 |
C7 |
C4 |
H10 |
110.4 |
110.8 |
C7 |
C4 |
H11 |
110.4 |
110.9 |
C7 |
C9 |
O12 |
123.0 |
120.0 |
C7 |
C9 |
O11 |
110.5 |
120.0 |
C4 |
C2 |
C13 |
108.6 |
106.1 |
C1 |
C2 |
C13 |
113.6 |
111.6 |
C2 |
C13 |
H12 |
111.2 |
110.0 |
C2 |
C13 |
H13 |
111.2 |
110.0 |
C1 |
C2 |
C4 |
114.2 |
111.3 |
C2 |
C4 |
H10 |
110.4 |
110.8 |
C2 |
C4 |
H11 |
110.4 |
110.7 |
C17 |
C1 |
C2 |
109.7 |
105.8 |
C1 |
C2 |
C14 |
101.5 |
105.1 |
C1 |
C17 |
N16 |
110.3 |
110.3 |
O12 |
C9 |
O11 |
126.4 |
119.9 |
C9 |
O11 |
C18 |
116.4 |
117.1 |
C2 |
C14 |
N16 |
108.8 |
106.7 |
C2 |
C14 |
O15 |
125.1 |
126.7 |
C6 |
C8 |
H5 |
119.5 |
119.9 |
C8 |
C6 |
H9 |
121.5 |
119.9 |
O11 |
C18 |
H15 |
110.7 |
109.4 |
O11 |
C18 |
H16 |
110.7 |
109.5 |
C24 |
C23 |
H4 |
119.9 |
120.0 |
C19 |
C24 |
H8 |
119.7 |
120.0 |
C23 |
C22 |
H1 |
120.3 |
120.1 |
C17 |
C6 |
H9 |
121.5 |
119.9 |
C17 |
N16 |
C14 |
109.7 |
112.1 |
C17 |
N16 |
H17 |
125.2 |
123.9 |
C19 |
C20 |
H7 |
119.6 |
120.0 |
N16 |
C14 |
O15 |
126.0 |
126.6 |
C14 |
N16 |
H17 |
125.2 |
123.9 |
C21 |
C22 |
H1 |
120.3 |
120.0 |
C22 |
C21 |
H3 |
119.9 |
120.0 |
C20 |
C21 |
H3 |
119.9 |
120.0 |
H10 |
C4 |
H11 |
108.5 |
110.7 |
H12 |
C13 |
H13 |
107.7 |
110.0 |
H15 |
C18 |
H16 |
108.2 |
109.5 |
Torsion Angles for 09A
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C7 |
N10 |
C13 |
H12 |
108.1 |
265.8 |
C7 |
N10 |
C13 |
H13 |
228.1 |
144.5 |
N10 |
C7 |
C4 |
H10 |
98.3 |
154.9 |
N10 |
C7 |
C4 |
H11 |
218.2 |
278.3 |
N10 |
C7 |
C9 |
O12 |
352.7 |
13.9 |
N10 |
C7 |
C9 |
O11 |
174.4 |
193.9 |
C2 |
C13 |
N10 |
H12 |
240.0 |
119.4 |
C2 |
C13 |
N10 |
H13 |
120.0 |
240.7 |
H12 |
C13 |
N10 |
H13 |
240.0 |
121.3 |
C3 |
C5 |
C8 |
C6 |
0.3 |
0.2 |
C8 |
C5 |
C3 |
H2 |
180.0 |
179.7 |
C3 |
C5 |
C8 |
H5 |
180.3 |
180.2 |
C1 |
C3 |
C5 |
H2 |
179.9 |
180.3 |
C3 |
C1 |
C2 |
C13 |
57.9 |
58.9 |
C3 |
C1 |
C2 |
C4 |
292.5 |
300.6 |
C17 |
C1 |
C3 |
C2 |
180.2 |
179.5 |
C3 |
C1 |
C2 |
C14 |
179.7 |
180.1 |
C3 |
C1 |
C17 |
N16 |
180.5 |
179.9 |
C3 |
C5 |
C8 |
H2 |
180.0 |
180.3 |
C6 |
C8 |
C5 |
H5 |
180.0 |
180.0 |
C5 |
C8 |
C6 |
H9 |
179.8 |
180.0 |
C4 |
C7 |
C9 |
O12 |
238.5 |
260.0 |
C4 |
C7 |
C9 |
O11 |
60.2 |
80.0 |
C7 |
C4 |
C2 |
C13 |
15.4 |
338.6 |
C1 |
C2 |
C4 |
C7 |
143.4 |
100.2 |
C2 |
C4 |
C7 |
H10 |
240.0 |
241.7 |
C2 |
C4 |
C7 |
H11 |
120.0 |
118.3 |
H10 |
C4 |
C7 |
H11 |
240.0 |
236.6 |
O12 |
C9 |
C7 |
O11 |
178.3 |
180.0 |
C7 |
C9 |
O11 |
C18 |
171.8 |
180.0 |
N10 |
C13 |
C2 |
H12 |
120.0 |
240.7 |
N10 |
C13 |
C2 |
H13 |
240.0 |
119.3 |
C1 |
C2 |
C13 |
C4 |
231.7 |
238.6 |
C13 |
C2 |
C4 |
H10 |
255.4 |
220.3 |
C13 |
C2 |
C4 |
H11 |
135.4 |
97.1 |
C17 |
C1 |
C2 |
C13 |
237.7 |
239.4 |
C1 |
C2 |
C13 |
C14 |
115.1 |
117.3 |
C13 |
C2 |
C14 |
N16 |
122.3 |
120.7 |
C13 |
C2 |
C14 |
O15 |
298.5 |
300.9 |
H12 |
C13 |
C2 |
H13 |
120.0 |
238.7 |
C7 |
C4 |
C2 |
H10 |
120.0 |
118.3 |
C7 |
C4 |
C2 |
H11 |
240.0 |
241.5 |
C1 |
C2 |
C4 |
C13 |
128.0 |
121.6 |
C4 |
C2 |
C13 |
H12 |
237.6 |
117.9 |
C4 |
C2 |
C13 |
H13 |
117.5 |
239.2 |
C17 |
C1 |
C2 |
C4 |
112.3 |
121.1 |
C1 |
C2 |
C4 |
C14 |
249.5 |
243.2 |
C4 |
C2 |
C14 |
N16 |
240.8 |
239.0 |
C4 |
C2 |
C14 |
O15 |
57.0 |
59.1 |
H10 |
C4 |
C2 |
H11 |
120.0 |
123.2 |
C3 |
C1 |
C2 |
C17 |
180.2 |
179.5 |
C2 |
C1 |
C3 |
H6 |
359.6 |
0.0 |
C7 |
C4 |
C2 |
C1 |
143.4 |
100.2 |
C4 |
C2 |
C1 |
C13 |
234.6 |
241.7 |
C1 |
C2 |
C13 |
H12 |
109.2 |
356.5 |
C1 |
C2 |
C13 |
H13 |
349.2 |
117.8 |
C1 |
C2 |
C4 |
H10 |
23.4 |
341.9 |
C1 |
C2 |
C4 |
H11 |
263.4 |
218.7 |
C2 |
C1 |
C17 |
N16 |
0.7 |
359.5 |
C1 |
C2 |
C14 |
N16 |
0.2 |
359.5 |
C1 |
C2 |
C14 |
O15 |
176.4 |
179.7 |
C3 |
C1 |
C17 |
C2 |
179.8 |
180.4 |
C17 |
C1 |
C3 |
H6 |
179.8 |
179.5 |
C17 |
C1 |
C2 |
C14 |
359.5 |
0.6 |
C1 |
C17 |
C6 |
H9 |
179.8 |
179.6 |
C1 |
C17 |
N16 |
C14 |
359.4 |
0.2 |
C1 |
C17 |
N16 |
H17 |
179.4 |
179.9 |
C7 |
C9 |
O12 |
O11 |
182.0 |
180.0 |
O12 |
C9 |
O11 |
C18 |
353.6 |
360.0 |
C7 |
C9 |
O11 |
O12 |
178.2 |
180.0 |
C9 |
O11 |
C18 |
H15 |
308.7 |
60.0 |
C9 |
O11 |
C18 |
H16 |
68.7 |
300.0 |
C1 |
C2 |
C14 |
C13 |
237.9 |
238.8 |
C1 |
C2 |
C14 |
C4 |
119.4 |
120.6 |
C17 |
N16 |
C14 |
C2 |
0.2 |
0.2 |
N16 |
C14 |
C2 |
O15 |
183.8 |
179.8 |
C2 |
C14 |
N16 |
H17 |
180.2 |
180.4 |
C6 |
C8 |
C5 |
H2 |
180.3 |
179.9 |
C5 |
C8 |
C6 |
H5 |
180.0 |
180.0 |
C17 |
C6 |
C8 |
H9 |
180.0 |
180.1 |
H15 |
C18 |
O11 |
H16 |
240.0 |
119.9 |
C24 |
C23 |
C22 |
H1 |
179.8 |
180.3 |
C19 |
C24 |
C23 |
H4 |
180.0 |
179.4 |
C24 |
C19 |
C20 |
H7 |
179.9 |
179.4 |
C21 |
C22 |
C23 |
H1 |
180.0 |
179.7 |
C23 |
C22 |
C21 |
H3 |
180.2 |
180.3 |
C3 |
C1 |
C17 |
C6 |
0.4 |
0.7 |
C17 |
C6 |
C8 |
H5 |
179.8 |
180.1 |
C8 |
C6 |
C17 |
H9 |
180.0 |
179.9 |
N16 |
C17 |
C1 |
C2 |
0.7 |
359.5 |
C2 |
C14 |
N16 |
C17 |
0.2 |
0.2 |
N16 |
C17 |
C6 |
H9 |
359.7 |
0.5 |
C17 |
N16 |
C14 |
O15 |
184.1 |
180.0 |
C14 |
N16 |
C17 |
H17 |
180.0 |
180.3 |
C18 |
C19 |
C24 |
H8 |
0.4 |
359.4 |
C18 |
C19 |
C20 |
H7 |
359.6 |
0.3 |
C19 |
C20 |
C21 |
H3 |
179.9 |
180.0 |
C2 |
C14 |
N16 |
O15 |
176.1 |
180.2 |
C17 |
N16 |
C14 |
H17 |
180.0 |
179.7 |
C2 |
C14 |
O15 |
N16 |
184.5 |
179.8 |
O15 |
C14 |
N16 |
H17 |
4.1 |
0.3 |
C23 |
C22 |
C21 |
H1 |
180.0 |
180.3 |
C20 |
C21 |
C22 |
H3 |
180.0 |
180.0 |
C20 |
C21 |
C22 |
H1 |
180.3 |
180.0 |
C22 |
C21 |
C20 |
H3 |
180.0 |
180.0 |
H1 |
C22 |
C21 |
H3 |
0.3 |
0.0 |
H2 |
C5 |
C8 |
C6 |
180.3 |
179.9 |
H2 |
C5 |
C8 |
H5 |
0.3 |
359.9 |
H3 |
C21 |
C22 |
H1 |
0.3 |
0.0 |
H4 |
C23 |
C22 |
H1 |
359.8 |
0.3 |
C5 |
C8 |
H5 |
C6 |
180.0 |
180.0 |
H5 |
C8 |
C5 |
H2 |
0.3 |
359.9 |
H5 |
C8 |
C6 |
H9 |
359.9 |
360.0 |
H6 |
C3 |
C5 |
H2 |
359.8 |
0.3 |
H6 |
C3 |
C1 |
C2 |
359.6 |
0.0 |
H6 |
C3 |
C1 |
C17 |
179.8 |
179.5 |
H7 |
C20 |
C21 |
H3 |
359.9 |
360.0 |
H8 |
C24 |
C23 |
H4 |
0.1 |
359.9 |
H9 |
C6 |
C8 |
H5 |
359.9 |
360.0 |
C7 |
C4 |
H10 |
C2 |
242.2 |
246.7 |
C7 |
C4 |
H10 |
H11 |
121.1 |
123.5 |
H10 |
C4 |
C2 |
C13 |
255.4 |
220.3 |
C2 |
C4 |
H10 |
H11 |
238.9 |
236.7 |
C7 |
C4 |
H11 |
C2 |
117.8 |
113.3 |
C7 |
C4 |
H11 |
H10 |
238.9 |
236.6 |
H11 |
C4 |
C2 |
C13 |
135.4 |
97.1 |
C2 |
C4 |
H11 |
H10 |
121.1 |
123.3 |
N10 |
C13 |
H12 |
H13 |
122.0 |
238.7 |
C2 |
C13 |
H12 |
H13 |
237.9 |
121.4 |
N10 |
C13 |
H13 |
H12 |
238.0 |
121.3 |
C2 |
C13 |
H13 |
H12 |
122.1 |
238.6 |
H14 |
C7 |
C4 |
C2 |
214.9 |
278.0 |
H14 |
C7 |
C4 |
H10 |
334.9 |
36.3 |
H14 |
C7 |
C4 |
H11 |
94.9 |
159.7 |
H14 |
C7 |
C9 |
O12 |
116.3 |
137.0 |
H14 |
C7 |
C9 |
O11 |
298.0 |
317.1 |
O11 |
C18 |
H15 |
H16 |
121.5 |
240.0 |
O11 |
C18 |
H16 |
H15 |
238.5 |
119.9 |
C17 |
N16 |
H17 |
C14 |
180.0 |
180.3 |
H17 |
N16 |
C14 |
O15 |
4.1 |
0.3 |
H18 |
N10 |
C7 |
H14 |
263.0 |
200.4 |
H18 |
N10 |
C13 |
H12 |
348.1 |
145.2 |
H18 |
N10 |
C13 |
H13 |
108.1 |
23.9 |