PDB Chemical Component 099

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 099

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C4 C1 1.378 1.381
C4 C14 1.377 1.385
C5 C15 1.371 1.385
C5 C2 1.381 1.381
C6 C3 1.382 1.382
C6 C12 1.376 1.383
C7 C13 1.373 1.387
C7 C3 1.380 1.382
C8 C13 1.372 1.387
C8 C12 1.378 1.382
C10 C20 1.512 1.530
C10 C12 1.493 1.507
C13 O23 1.375 1.360
C15 C14 1.365 1.382
C15 C19 1.477 1.514
C17 C20 1.496 1.507
C17 N22 1.366 1.348
C17 O27 1.223 1.213
C20 C11 1.521 1.530
C1 C2 1.379 1.382
C9 C14 1.483 1.513
C9 C18 1.526 1.543
C11 C16 1.494 1.506
C16 N21 1.365 1.347
C16 O26 1.219 1.213
C18 C19 1.520 1.544
C18 O24 1.427 1.429
C19 N22 1.437 1.465
N21 O25 1.404 1.416
C4 H4 1.080 1.080
C5 H5 1.080 1.079
C6 H6 1.080 1.080
C7 H7 1.080 1.080
C8 H8 1.080 1.079
C10 H10 1.100 1.091
C10 H10A 1.100 1.090
C20 H20 1.100 1.091
C1 H1 1.081 1.080
C2 H2 1.080 1.080
C3 H3 1.080 1.080
C9 H9 1.099 1.091
C9 H9A 1.100 1.090
C11 H11 1.099 1.090
C11 H11A 1.100 1.090
C18 H18 1.100 1.090
C19 H19 1.100 1.091
N21 HN21 1.000 0.970
N22 HN22 1.000 0.969
O23 HO23 0.950 0.967
O24 HO24 0.950 0.967
O25 HO25 0.950 0.967

Bond Angles for 099

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C4 C14 118.5 120.2
C4 C1 C2 120.9 119.9
C1 C4 H4 120.7 119.9
C4 C1 H1 119.5 120.0
C4 C14 C15 120.1 119.8
C4 C14 C9 127.4 130.4
C14 C4 H4 120.7 119.9
C15 C5 C2 117.8 120.2
C5 C15 C14 122.2 119.9
C5 C15 C19 127.0 130.4
C15 C5 H5 121.1 119.9
C5 C2 C1 120.4 120.0
C2 C5 H5 121.1 119.9
C5 C2 H2 119.8 120.0
C3 C6 C12 121.1 120.2
C6 C3 C7 119.8 120.0
C3 C6 H6 119.4 120.0
C6 C3 H3 120.1 120.0
C6 C12 C8 119.2 120.0
C6 C12 C10 120.0 120.0
C12 C6 H6 119.5 119.9
C13 C7 C3 118.4 119.9
C7 C13 C8 122.3 119.9
C7 C13 O23 119.7 120.0
C13 C7 H7 120.8 120.0
C3 C7 H7 120.8 120.1
C7 C3 H3 120.1 120.0
C13 C8 C12 119.2 119.9
C8 C13 O23 117.9 120.0
C13 C8 H8 120.4 120.1
C8 C12 C10 120.7 120.0
C12 C8 H8 120.4 120.0
C20 C10 C12 115.1 109.5
C10 C20 C17 107.8 109.5
C10 C20 C11 110.8 109.5
C20 C10 H10 107.7 109.5
C20 C10 H10A 106.4 109.5
C10 C20 H20 109.0 109.5
C12 C10 H10 107.6 109.4
C12 C10 H10A 106.4 109.4
C13 O23 HO23 109.5 114.0
C14 C15 C19 110.7 109.7
C15 C14 C9 112.5 109.8
C15 C19 C18 104.2 105.2
C15 C19 N22 116.4 110.3
C15 C19 H19 110.3 110.3
C20 C17 N22 114.4 120.0
C20 C17 O27 122.3 120.0
C17 C20 C11 107.0 109.5
C17 C20 H20 112.5 109.4
N22 C17 O27 123.3 120.0
C17 N22 C19 115.3 120.0
C17 N22 HN22 122.3 120.0
C20 C11 C16 108.9 109.5
C11 C20 H20 109.7 109.4
C20 C11 H11 109.6 109.5
C20 C11 H11A 109.8 109.4
C2 C1 H1 119.6 120.1
C1 C2 H2 119.8 120.0
C14 C9 C18 102.9 105.2
C14 C9 H9 111.7 110.3
C14 C9 H9A 113.2 110.3
C9 C18 C19 107.4 102.4
C9 C18 O24 111.3 110.9
C18 C9 H9 111.8 110.3
C18 C9 H9A 113.1 110.3
C9 C18 H18 109.3 110.9
C11 C16 N21 112.2 120.0
C11 C16 O26 123.8 120.0
C16 C11 H11 109.6 109.5
C16 C11 H11A 109.8 109.5
N21 C16 O26 123.9 120.0
C16 N21 O25 114.7 120.0
C16 N21 HN21 122.7 120.0
C19 C18 O24 108.3 110.8
C18 C19 N22 114.2 110.3
C19 C18 H18 112.2 110.8
C18 C19 H19 112.6 110.3
O24 C18 H18 108.4 110.9
C18 O24 HO24 109.5 114.0
N22 C19 H19 99.4 110.3
C19 N22 HN22 122.3 120.0
O25 N21 HN21 122.7 120.0
N21 O25 HO25 109.5 114.0
H10 C10 H10A 113.9 109.5
H9 C9 H9A 104.4 110.3
H11 C11 H11A 109.1 109.5

Torsion Angles for 099

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1 C4 C14 C15 359.2 360.0
C1 C4 C14 C9 180.2 180.0
C14 C4 C1 H4 180.0 180.3
C5 C2 C1 C4 359.6 360.0
C2 C1 C4 H1 180.0 180.1
C4 C1 C2 H2 179.6 180.0
C14 C4 C1 C2 0.5 0.0
C1 C4 C14 H4 180.0 179.7
C14 C4 C1 H1 180.5 180.0
C5 C15 C14 C4 0.9 0.0
C4 C14 C15 C19 179.7 180.0
C15 C14 C4 C9 179.0 179.9
C4 C14 C9 C18 170.7 197.2
C4 C14 C9 H9 290.7 316.1
C4 C14 C9 H9A 48.3 78.2
C4 C14 C15 C5 0.9 0.0
C15 C5 C2 C1 0.4 0.0
C2 C5 C15 H5 180.0 180.0
C15 C5 C2 H2 180.5 180.0
C14 C15 C5 C19 178.6 180.0
C5 C15 C14 C9 180.0 180.0
C5 C15 C19 C18 189.0 162.8
C5 C15 C19 N22 315.7 281.7
C5 C15 C19 H19 67.8 43.9
C4 C1 C2 C5 359.6 360.0
C2 C5 C15 C14 359.3 360.0
C2 C5 C15 C19 180.7 180.0
C15 C5 C2 H5 180.0 180.0
C5 C2 C1 H1 179.6 180.1
C1 C2 C5 H2 180.0 180.0
C3 C6 C12 C8 0.5 360.0
C3 C6 C12 C10 181.5 180.0
C12 C6 C3 H6 180.0 180.3
C13 C7 C3 C6 359.6 0.0
C6 C3 C7 H7 179.6 180.0
C7 C3 C6 H3 180.0 180.0
C12 C6 C3 C7 359.7 0.0
C3 C6 C12 H6 180.0 179.7
C12 C6 C3 H3 179.7 180.0
C13 C8 C12 C6 0.0 0.0
C8 C12 C6 C10 179.0 180.0
C6 C12 C8 H8 180.0 180.0
C20 C10 C12 C6 235.2 95.9
C6 C12 C10 H10 115.2 335.9
C6 C12 C10 H10A 352.7 215.9
C6 C3 C7 C13 359.6 0.0
C3 C7 C13 H7 180.0 180.0
C13 C7 C3 H3 179.6 180.1
C7 C13 C8 C12 359.2 0.0
C8 C13 C7 O23 181.2 180.0
C7 C13 C8 H8 179.2 180.0
C7 C13 O23 HO23 276.1 90.0
C7 C3 C6 C12 359.7 0.0
C7 C3 C6 H6 179.7 179.8
C6 C3 C7 H3 180.0 180.0
C3 C7 C13 C8 1.0 360.0
C3 C7 C13 O23 179.7 180.0
C13 C7 C3 H7 180.0 180.0
C6 C12 C8 C13 0.0 0.0
C8 C13 C7 C3 1.0 360.0
C7 C13 C8 O23 178.8 180.0
C8 C13 C7 H7 181.0 180.0
C13 C8 C12 C10 179.0 180.0
C12 C8 C13 H8 180.0 180.0
C8 C13 O23 HO23 94.9 270.0
C6 C12 C8 C10 181.0 180.0
C8 C12 C6 H6 180.5 180.2
C12 C8 C13 O23 180.4 180.0
C13 C8 C12 H8 180.0 180.0
C20 C10 C12 C8 56.2 275.9
C8 C12 C10 H10 296.2 155.9
C8 C12 C10 H10A 173.7 35.9
C6 C12 C10 C20 235.2 95.9
C8 C12 C10 C20 56.2 275.9
C12 C10 C20 H10 240.0 240.0
C12 C10 C20 H10A 117.5 120.0
C10 C20 C17 N22 229.9 180.0
C10 C20 C17 O27 50.0 0.0
C17 C20 C10 C11 243.2 239.9
C17 C20 C10 H20 122.4 120.0
C10 C20 C11 C16 64.4 297.0
C11 C20 C10 H20 239.3 240.0
C10 C20 C11 H11 184.4 57.0
C10 C20 C11 H11A 304.2 177.0
H10 C10 C20 H10A 237.5 240.0
C6 C12 C10 C8 179.0 180.0
C10 C12 C6 H6 1.5 0.3
C10 C12 C8 H8 359.0 360.0
C12 C10 C20 C17 68.2 174.4
C12 C10 C20 C11 185.0 294.4
C20 C10 C12 H10 120.0 120.0
C20 C10 C12 H10A 242.5 240.0
C12 C10 C20 H20 305.8 54.4
H10 C10 C12 H10A 122.5 120.0
O23 C13 C7 C3 179.7 180.0
C7 C13 O23 C8 181.2 180.0
O23 C13 C7 H7 359.7 0.0
O23 C13 C8 C12 180.4 180.0
O23 C13 C8 H8 0.4 360.0
C4 C14 C15 C9 180.8 180.1
C15 C14 C4 H4 179.2 180.2
C14 C15 C5 C2 359.3 360.0
C5 C15 C14 C19 181.2 180.0
C14 C15 C5 H5 179.3 179.9
C14 C15 C19 C18 10.2 342.8
C14 C15 C19 N22 136.9 101.8
C14 C15 C19 H19 249.1 223.9
C15 C14 C9 C18 351.6 17.2
C15 C14 C9 H9 111.6 136.2
C15 C14 C9 H9A 229.2 258.3
C19 C15 C5 C2 180.7 180.0
C5 C15 C19 C14 178.8 180.0
C19 C15 C5 H5 0.7 360.0
C19 C15 C14 C9 358.9 360.0
C17 N22 C19 C15 148.4 86.5
C9 C18 C19 C15 344.9 26.3
C15 C19 C18 O24 105.2 144.6
C18 C19 C15 N22 233.3 241.1
C15 C19 C18 H18 224.8 268.1
C18 C19 C15 H19 121.1 118.9
N22 C19 C15 H19 247.8 237.9
C15 C19 N22 HN22 328.3 266.5
C17 C20 C10 C12 68.2 174.4
C10 C20 C17 C11 119.2 120.0
C17 C20 C10 H10 188.2 294.3
C17 C20 C10 H10A 310.7 54.3
C10 C20 C17 H20 239.8 240.0
N22 C17 C20 O27 179.9 180.0
C20 C17 N22 C19 184.1 180.0
C20 C17 N22 HN22 4.2 0.0
C17 C20 C11 C16 181.7 57.0
C11 C20 C17 H20 120.6 120.0
C17 C20 C11 H11 301.7 177.0
C17 C20 C11 H11A 61.5 297.0
C15 C19 N22 C17 148.4 86.5
C20 C17 N22 O27 180.1 180.0
N22 C17 C20 C11 110.6 60.0
N22 C17 C20 H20 350.0 300.0
C18 C19 N22 C17 269.9 202.2
C17 N22 C19 H19 30.0 324.3
C19 N22 C17 HN22 180.0 180.0
C20 C17 O27 N22 179.9 180.0
O27 C17 C20 C11 290.8 240.0
O27 C17 C20 H20 170.2 120.0
O27 C17 N22 C19 4.0 0.0
O27 C17 N22 HN22 184.0 180.0
C11 C20 C10 C12 185.0 294.4
C10 C20 C11 C17 242.7 240.0
C11 C20 C10 H10 305.0 54.4
C11 C20 C10 H10A 67.5 174.4
C10 C20 C11 H20 120.3 120.0
C11 C20 C17 N22 110.6 60.0
C11 C20 C17 O27 290.8 240.0
C17 C20 C11 H20 237.6 240.0
C20 C11 C16 N21 247.8 174.2
C20 C11 C16 O26 67.6 354.2
C16 C11 C20 H11 240.0 240.0
C16 C11 C20 H11A 120.2 120.0
H11 C11 C20 H11A 240.2 240.0
C2 C1 C4 C14 0.5 0.0
C2 C1 C4 H4 180.5 179.7
C4 C1 C2 H1 180.0 179.9
C1 C2 C5 H5 180.5 180.0
C5 C2 C1 H2 180.0 180.0
C4 C14 C9 C15 179.1 179.9
C9 C14 C4 H4 0.2 0.3
C9 C14 C15 C19 358.9 360.0
C14 C9 C18 C19 14.3 333.6
C14 C9 C18 O24 256.0 215.4
C18 C9 C14 H9 240.0 241.0
C18 C9 C14 H9A 122.4 118.9
C14 C9 C18 H18 136.3 91.8
H9 C9 C14 H9A 242.4 237.9
C15 C19 C18 C9 344.9 26.3
C14 C9 C18 H9 120.0 118.9
C14 C9 C18 H9A 237.6 241.1
C19 C18 C9 O24 118.3 118.2
C9 C18 C19 N22 216.9 267.4
C19 C18 C9 H18 238.0 241.8
C9 C18 C19 H19 104.5 145.3
O24 C18 C9 H18 119.7 123.6
C9 C18 O24 HO24 233.2 298.6
H9 C9 C18 H9A 117.6 122.2
C16 C11 C20 H20 304.1 177.0
C20 C11 C16 H11 120.0 120.0
C20 C11 C16 H11A 239.8 240.0
N21 C16 C11 O26 180.1 180.0
C11 C16 N21 O25 167.6 180.0
C11 C16 N21 HN21 347.7 0.0
H11 C11 C16 H11A 119.8 120.0
C11 C16 N21 O26 179.9 180.0
N21 C16 C11 H11 127.8 54.1
N21 C16 C11 H11A 8.0 294.1
O25 N21 C16 HN21 180.0 180.0
C16 N21 O25 HO25 211.4 180.0
C11 C16 O26 N21 180.2 180.0
O26 C16 C11 H11 307.6 234.2
O26 C16 C11 H11A 187.8 114.2
O26 C16 N21 O25 347.8 360.0
O26 C16 N21 HN21 167.8 180.0
C15 C19 C18 N22 128.0 118.9
C15 C19 C18 H19 240.4 241.1
C17 N22 C19 C18 269.9 202.2
C9 C18 C19 O24 239.7 241.7
C19 C18 C9 H9 254.3 214.7
C19 C18 C9 H9A 136.7 92.6
C9 C18 C19 H18 120.1 118.2
O24 C18 C19 H18 240.4 236.5
C19 C18 O24 HO24 115.3 185.6
N22 C19 C18 H19 112.4 122.1
C18 C19 N22 HN22 89.8 22.2
C9 C18 O24 C19 117.8 113.0
O24 C18 C9 H9 135.9 96.5
O24 C18 C9 H9A 18.4 334.3
C9 C18 O24 H18 239.8 236.4
O24 C18 C19 N22 337.2 25.7
C19 C18 O24 H18 122.0 123.5
O24 C18 C19 H19 224.8 263.5
C15 C19 N22 C18 238.5 244.2
C15 C19 N22 H19 118.3 122.1
C19 N22 C17 O27 4.0 0.0
C17 N22 C19 HN22 180.0 180.0
N22 C19 C18 O24 337.2 25.7
N22 C19 C18 H18 96.8 149.2
C18 C19 N22 H19 239.9 237.9
O25 N21 C16 O26 347.8 360.0
C16 N21 O25 HN21 180.0 180.0
C1 C4 H4 C14 180.0 180.3
H4 C4 C1 C2 180.5 179.7
H4 C4 C1 H1 0.5 359.7
H4 C4 C14 C15 179.2 180.2
H4 C4 C14 C9 0.2 0.3
C15 C5 H5 C2 180.0 180.0
H5 C5 C15 C14 179.3 179.9
H5 C5 C15 C19 0.7 360.0
H5 C5 C2 C1 180.5 180.0
H5 C5 C2 H2 0.5 0.0
C3 C6 H6 C12 180.0 180.3
H6 C6 C3 C7 179.7 179.8
H6 C6 C3 H3 359.7 359.7
H6 C6 C12 C8 180.5 180.2
H6 C6 C12 C10 1.5 0.3
C13 C7 H7 C3 180.0 180.0
H7 C7 C13 C8 181.0 180.0
H7 C7 C13 O23 359.7 0.0
H7 C7 C3 H3 359.6 0.0
C13 C8 H8 C12 180.0 180.0
H8 C8 C13 O23 0.4 360.0
H8 C8 C12 C10 359.0 360.0
C20 C10 H10 C12 235.4 240.0
H10 C10 C20 C17 188.2 294.3
H10 C10 C20 C11 305.0 54.4
C20 C10 H10 H10A 117.7 120.1
H10 C10 C20 H20 65.8 174.3
C12 C10 H10 H10A 242.3 240.1
C20 C10 H10A C12 123.1 120.0
H10A C10 C20 C17 310.7 54.3
H10A C10 C20 C11 67.5 174.4
C20 C10 H10A H10 241.6 239.9
H10A C10 C20 H20 188.3 294.4
C12 C10 H10A H10 118.4 119.9
H20 C20 C10 C12 305.8 54.4
C10 C20 H20 C17 119.5 120.0
C10 C20 H20 C11 238.6 240.0
H20 C20 C10 H10 65.8 174.3
H20 C20 C10 H10A 188.3 294.4
H20 C20 C17 N22 350.0 300.0
H20 C20 C17 O27 170.2 120.0
C17 C20 H20 C11 119.0 120.0
H20 C20 C11 C16 304.1 177.0
H20 C20 C11 H11 64.1 297.0
H20 C20 C11 H11A 183.9 57.0
H1 C1 C4 C14 180.5 180.0
C4 C1 H1 C2 180.0 180.1
H1 C1 C4 H4 0.5 359.7
H1 C1 C2 H2 359.6 0.1
C5 C2 H2 C1 180.0 180.0
H2 C2 C5 H5 0.5 0.0
H2 C2 C1 H1 359.6 0.1
H3 C3 C6 C12 179.7 180.0
C6 C3 H3 C7 180.0 180.0
H3 C3 C6 H6 359.7 359.7
H3 C3 C7 H7 359.6 0.0
C14 C9 H9 C18 245.3 244.2
C14 C9 H9 H9A 122.7 122.1
H9 C9 C18 C19 254.3 214.7
H9 C9 C18 O24 135.9 96.5
C18 C9 H9 H9A 237.3 237.8
H9 C9 C18 H18 16.3 332.9
C14 C9 H9A C18 116.5 115.8
C14 C9 H9A H9 238.2 237.9
H9A C9 C18 C19 136.7 92.6
H9A C9 C18 O24 18.4 334.3
C18 C9 H9A H9 121.8 122.2
H9A C9 C18 H18 258.7 210.7
C20 C11 H11 C16 240.5 240.0
H11 C11 C20 H20 64.1 297.0
C20 C11 H11 H11A 120.2 120.0
H11 C11 C16 N21 127.8 54.1
H11 C11 C16 O26 307.6 234.2
C16 C11 H11 H11A 239.8 240.0
C20 C11 H11A C16 119.7 120.0
H11A C11 C20 H20 183.9 57.0
C20 C11 H11A H11 239.9 240.0
H11A C11 C16 N21 8.0 294.1
H11A C11 C16 O26 187.8 114.2
C16 C11 H11A H11 120.2 120.0
C9 C18 H18 C19 241.0 247.1
C9 C18 H18 O24 121.5 123.6
H18 C18 C9 H9 16.3 332.9
H18 C18 C9 H9A 258.7 210.7
C19 C18 H18 O24 240.5 236.5
H18 C18 C19 N22 96.8 149.2
H18 C18 C19 H19 344.4 27.0
H18 C18 O24 HO24 353.4 62.1
C15 C19 H19 C18 116.0 115.7
C15 C19 H19 N22 237.3 237.9
H19 C19 C18 O24 224.8 263.5
C18 C19 H19 N22 121.3 122.1
H19 C19 C18 H18 344.4 27.0
H19 C19 N22 HN22 210.0 144.3
HN21 N21 C16 O26 167.8 180.0
C16 N21 HN21 O25 180.0 180.0
HN21 N21 O25 HO25 31.4 359.9
HN22 N22 C17 O27 184.0 180.0
C17 N22 HN22 C19 180.0 180.0
HN22 N22 C19 H19 210.0 144.3
HO24 O24 C18 H18 353.4 62.1
HO25 O25 N21 HN21 31.4 359.9