PDB Chemical Component 08Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 08Z

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	N2	1.375	1.392
C1	C17	1.445	1.392
C1	C21	1.443	1.392
N2	C3	1.376	1.378
C3	N4	1.342	1.301
C3	S7	1.742	1.709
N4	C5	1.342	1.313
C5	C6	1.383	1.383
C5	N8	1.272	1.385
C6	S7	1.698	1.761
C6	C9	1.490	1.407
C9	C10	1.492	1.480
C9	O16	1.334	1.219
C10	C11	1.453	1.399
C10	C15	1.419	1.395
C11	C12	1.414	1.384
C12	C13	1.416	1.382
C13	N14	1.387	1.320
N14	C15	1.392	1.316
C17	C18	1.422	1.376
C18	C19	1.441	1.398
C19	C20	1.431	1.398
C19	C22	1.496	1.476
C20	C21	1.420	1.376
C22	O23	1.352	1.216
C22	N24	1.302	1.347
N2	HN2	1.000	0.969
N8	HN8	1.000	0.971
N8	HN8A	1.000	0.969
C11	H11	1.080	1.080
C12	H12	1.080	1.080
C13	H13	1.080	1.080
C15	H15	1.080	1.080
C17	H17	1.080	1.080
C18	H18	1.080	1.079
C20	H20	1.080	1.080
C21	H21	1.080	1.080
N24	HN24	1.000	0.970
N24	HN2A	1.000	0.970

Bond Angles for 08Z

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N2	C1	C17	118.3	120.0
N2	C1	C21	123.5	119.9
C1	N2	C3	128.9	120.0
C1	N2	HN2	115.6	120.0
C17	C1	C21	118.2	120.1
C1	C17	C18	120.7	120.1
C1	C17	H17	119.6	119.9
C1	C21	C20	121.0	120.1
C1	C21	H21	119.5	120.0
N2	C3	N4	118.5	124.6
N2	C3	S7	127.4	124.5
C3	N2	HN2	115.6	120.0
N4	C3	S7	114.2	110.9
C3	N4	C5	111.2	117.3
C3	S7	C6	88.2	90.5
N4	C5	C6	114.2	113.6
N4	C5	N8	121.8	123.2
C6	C5	N8	124.0	123.2
C5	C6	S7	112.2	107.7
C5	C6	C9	124.7	126.1
C5	N8	HN8	109.5	120.0
C5	N8	HN8A	109.5	120.0
S7	C6	C9	123.1	126.2
C6	C9	C10	123.3	120.0
C6	C9	O16	118.1	120.0
C10	C9	O16	118.7	120.0
C9	C10	C11	119.9	120.5
C9	C10	C15	121.8	120.6
C11	C10	C15	118.3	118.9
C10	C11	C12	121.1	118.3
C10	C11	H11	119.5	120.9
C10	C15	N14	119.0	120.6
C10	C15	H15	120.5	119.7
C11	C12	C13	118.6	119.3
C12	C11	H11	119.4	120.8
C11	C12	H12	120.7	120.3
C12	C13	N14	119.9	121.0
C13	C12	H12	120.7	120.4
C12	C13	H13	120.1	119.5
C13	N14	C15	123.2	121.9
N14	C13	H13	120.1	119.5
N14	C15	H15	120.5	119.8
C17	C18	C19	120.6	119.9
C18	C17	H17	119.7	120.0
C17	C18	H18	119.7	120.1
C18	C19	C20	119.0	119.9
C18	C19	C22	119.8	120.1
C19	C18	H18	119.7	120.0
C20	C19	C22	121.2	120.0
C19	C20	C21	120.6	119.9
C19	C20	H20	119.7	120.0
C19	C22	O23	118.8	120.0
C19	C22	N24	122.1	120.0
C21	C20	H20	119.7	120.0
C20	C21	H21	119.5	119.9
O23	C22	N24	119.1	120.0
C22	N24	HN24	120.0	120.0
C22	N24	HN2A	120.0	120.1
HN8	N8	HN8A	109.5	120.0
HN24	N24	HN2A	120.0	120.0

Torsion Angles for 08Z

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C17	C1	N2	C21	181.2	180.2
N2	C1	C17	C18	179.1	180.0
N2	C1	C17	H17	359.1	360.0
N2	C1	C21	C20	181.0	179.8
N2	C1	C21	H21	1.0	359.9
C1	N2	C3	N4	178.6	356.6
C1	N2	C3	S7	359.2	176.2
C3	N2	C1	HN2	180.0	180.0
N2	C1	C17	C21	178.9	179.8
C17	C1	N2	C3	152.2	148.6
C17	C1	N2	HN2	332.3	328.6
C17	C1	C21	C20	359.8	359.5
C17	C1	C21	H21	179.9	179.7
C1	C17	C18	C19	359.8	360.0
C18	C17	C1	H17	180.0	180.0
C1	C17	C18	H18	179.7	180.0
N2	C1	C21	C17	181.2	180.2
C21	C1	N2	C3	331.1	328.4
C21	C1	N2	HN2	151.1	148.4
C21	C1	C17	C18	0.2	0.2
C21	C1	C17	H17	180.2	180.2
C19	C20	C21	C1	0.1	0.4
C1	C21	C20	H20	180.1	180.3
C20	C21	C1	H21	180.0	179.8
C3	N2	C1	C17	152.2	148.6
C3	N2	C1	C21	331.1	328.4
C1	N2	C3	HN2	180.0	180.0
N4	C3	N2	S7	179.4	180.3
N2	C3	N4	C5	181.2	180.0
N2	C3	S7	C6	178.3	179.9
N2	C3	N4	S7	180.5	179.7
N4	C3	N2	HN2	358.6	176.6
N4	C3	S7	C6	358.9	359.6
C3	N4	C5	C6	0.3	360.0
C3	N4	C5	N8	179.1	180.0
N2	C3	S7	N4	179.4	180.3
S7	C3	N2	HN2	179.2	356.2
S7	C3	N4	C5	0.7	0.3
C5	C6	S7	C3	1.2	0.4
C3	S7	C6	C9	181.5	180.0
C5	N4	C3	S7	0.7	0.3
C6	C5	N4	N8	181.2	180.0
N4	C5	C6	S7	358.8	359.7
N4	C5	C6	C9	178.6	180.0
N4	C5	N8	HN8	0.0	0.0
N4	C5	N8	HN8A	120.0	180.0
C3	S7	C6	C5	1.2	0.4
N4	C5	C6	N8	178.8	180.0
C6	C5	N8	HN8	178.7	180.0
C6	C5	N8	HN8A	298.7	360.0
S7	C6	C5	C9	180.2	179.7
C5	C6	C9	C10	183.7	172.4
C5	C6	C9	O16	2.3	352.2
N4	C5	N8	C6	181.3	180.0
N8	C5	C6	S7	180.1	179.7
N8	C5	C6	C9	359.8	0.1
HN8	N8	C5	HN8A	240.0	180.0
S7	C6	C5	N8	180.1	179.7
C5	C6	S7	C9	179.8	180.3
S7	C6	C9	C10	3.4	352.7
S7	C6	C9	O16	182.1	172.6
C9	C6	C5	N8	359.8	0.1
C5	C6	C9	S7	180.2	179.6
C10	C9	C6	O16	181.3	180.1
C6	C9	C10	C11	44.7	333.0
C6	C9	C10	C15	223.0	152.8
C6	C9	C10	O16	178.7	179.9
C11	C10	C9	C15	181.7	180.2
C9	C10	C11	C12	179.0	180.0
C9	C10	C11	H11	359.0	359.9
C9	C10	C15	N14	181.1	179.7
C9	C10	C15	H15	1.1	359.9
C6	C9	O16	C10	181.2	180.1
O16	C9	C10	C11	226.1	153.1
O16	C9	C10	C15	44.4	332.9
C11	C10	C9	O16	226.1	153.1
C9	C10	C11	C15	178.4	179.8
C11	C10	C15	N14	359.4	359.5
C11	C10	C15	H15	179.5	179.7
C10	C11	C12	C13	359.7	360.0
C12	C11	C10	H11	180.0	180.1
C10	C11	C12	H12	179.7	180.0
C15	C10	C9	O16	44.4	332.9
C9	C10	C15	C11	181.7	180.2
C15	C10	C11	C12	0.6	0.3
C15	C10	C11	H11	180.6	180.2
C13	N14	C15	C10	0.2	0.5
N14	C15	C10	H15	180.0	179.8
C12	C11	C10	C15	0.6	0.3
C10	C11	C12	H11	180.0	179.9
C11	C12	C13	N14	360.0	0.0
C13	C12	C11	H12	180.0	180.0
C11	C12	C13	H13	180.0	180.1
C13	C12	C11	H11	179.7	180.1
C11	C12	C13	H12	180.0	180.0
C12	C13	N14	C15	0.1	359.7
N14	C13	C12	H13	180.0	180.0
C10	C15	N14	C13	0.2	0.5
N14	C13	C12	H12	180.0	180.0
C12	C13	N14	H13	180.0	180.0
C13	N14	C15	H15	180.2	180.3
C10	C15	N14	H15	180.0	180.2
C15	N14	C13	H13	180.1	179.7
C18	C17	C1	C21	0.2	0.2
C1	C17	C18	H17	180.0	180.0
C17	C18	C19	C20	0.1	360.0
C17	C18	C19	C22	180.4	180.0
C19	C18	C17	H18	180.0	180.0
C19	C18	C17	H17	179.8	180.0
C17	C18	C19	H18	180.0	180.0
C20	C19	C18	C22	179.8	180.0
C18	C19	C20	C21	359.9	359.8
C18	C19	C20	H20	179.9	180.0
C18	C19	C22	O23	359.8	0.0
C18	C19	C22	N24	179.7	180.0
C1	C21	C20	C19	0.1	0.4
C18	C19	C20	C22	180.2	180.0
C20	C19	C18	H18	180.2	180.0
C20	C19	C22	O23	180.0	180.0
C20	C19	C22	N24	359.9	359.9
C21	C20	C19	H20	180.0	179.8
C19	C20	C21	H21	180.1	180.3
C18	C19	C22	C20	179.8	180.0
C22	C19	C18	H18	0.4	360.0
C22	C19	C20	C21	179.7	179.8
C22	C19	C20	H20	359.7	360.0
O23	C22	C19	N24	180.1	180.1
C19	C22	N24	HN24	180.1	0.1
C19	C22	N24	HN2A	0.1	180.0
C1	C21	C20	H21	180.0	180.2
C21	C20	C19	C22	179.7	179.8
C19	C20	C21	H20	180.0	180.2
C19	C22	O23	N24	179.9	179.9
O23	C22	N24	HN24	0.0	180.0
O23	C22	N24	HN2A	180.0	360.0
C19	C22	N24	O23	180.1	180.1
HN24	N24	C22	HN2A	180.0	180.0
HN2	N2	C1	C17	332.3	328.6
HN2	N2	C1	C21	151.1	148.4
C1	N2	HN2	C3	180.0	180.0
HN2	N2	C3	N4	358.6	176.6
HN2	N2	C3	S7	179.2	356.2
C5	N8	HN8	HN8A	120.0	180.0
C5	N8	HN8A	HN8	239.9	180.0
H11	C11	C10	C15	180.6	180.2
C10	C11	H11	C12	180.0	180.1
H11	C11	C12	C13	179.7	180.1
H11	C11	C12	H12	359.7	0.0
C11	C12	H12	C13	180.0	180.0
H12	C12	C11	H11	359.7	0.0
H12	C12	C13	N14	180.0	180.0
H12	C12	C13	H13	360.0	0.1
C12	C13	H13	N14	180.0	180.0
H13	C13	C12	H12	360.0	0.1
H13	C13	N14	C15	180.1	179.7
C10	C15	H15	N14	180.0	179.8
H17	C17	C1	C21	180.2	180.2
C1	C17	H17	C18	180.0	180.0
H17	C17	C18	C19	179.8	180.0
H17	C17	C18	H18	359.7	360.0
C17	C18	H18	C19	180.0	180.0
H18	C18	C17	H17	359.7	360.0
H18	C18	C19	C20	180.2	180.0
H18	C18	C19	C22	0.4	360.0
H20	C20	C19	C22	359.7	360.0
C19	C20	H20	C21	180.0	179.8
H20	C20	C21	H21	0.1	0.1
C1	C21	H21	C20	180.0	179.8
H21	C21	C20	H20	0.1	0.1
C22	N24	HN24	HN2A	180.0	180.0
C22	N24	HN2A	HN24	180.0	180.0