PDB Chemical Component 08Y

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 08Y

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C27	N4	1.459	1.469
BR	C29	2.000	1.890
N4	C18	1.455	1.466
N4	C17	1.475	1.458
C23	C17	1.554	1.535
C23	C25	1.509	1.506
C18	C16	1.536	1.533
C17	C21	1.543	1.506
C29	C25	1.478	1.330
C29	N5	1.364	1.387
C13	C11	1.514	1.531
C25	C26	1.451	1.459
C16	C22	1.517	1.505
C16	C15	1.506	1.506
N5	C28	1.364	1.362
N3	C15	1.340	1.348
N3	C5	1.460	1.465
C14	C11	1.535	1.530
C21	C22	1.342	1.321
C21	C24	1.506	1.476
C11	C5	1.541	1.529
C26	C28	1.480	1.397
C26	C24	1.455	1.411
C15	O5	1.233	1.213
O1	C5	1.440	1.432
O1	C2	1.441	1.426
C5	C8	1.519	1.509
C28	C31	1.406	1.394
C24	C30	1.397	1.376
C4	C7	1.525	1.553
C4	C1	1.531	1.546
C2	C1	1.528	1.531
C2	O2	1.442	1.429
C2	N1	1.454	1.471
C7	C6	1.530	1.543
C1	N2	1.466	1.478
C8	O3	1.227	1.213
C8	N1	1.334	1.343
C31	C32	1.416	1.390
C30	C32	1.416	1.394
N1	C3	1.471	1.466
N2	C6	1.463	1.470
N2	C9	1.347	1.344
C3	C9	1.529	1.507
C3	C10	1.524	1.530
C9	O4	1.229	1.213
C10	C12	1.519	1.530
C19	C12	1.523	1.530
C12	C20	1.517	1.530
C16	H1	1.100	1.090
C18	H2	1.100	1.090
C18	H3	1.100	1.090
C27	H5	1.100	1.089
C27	H6	1.099	1.091
C27	H7	1.100	1.090
C22	H8	1.080	1.080
C30	H9	1.080	1.080
C32	H10	1.080	1.080
C31	H11	1.080	1.080
C23	H12	1.100	1.090
C23	H13	1.100	1.090
C17	H14	1.100	1.090
N5	H15	1.001	0.971
N3	H16	1.000	0.970
C11	H17	1.100	1.091
C14	H18	1.100	1.089
C14	H19	1.101	1.090
C14	H20	1.100	1.090
C13	H21	1.100	1.090
C13	H22	1.100	1.091
C13	H23	1.100	1.090
C3	H24	1.100	1.090
C10	H25	1.101	1.090
C10	H26	1.100	1.089
C12	H27	1.100	1.090
C20	H28	1.101	1.090
C20	H29	1.100	1.090
C20	H30	1.099	1.090
C19	H31	1.099	1.090
C19	H32	1.100	1.091
C19	H33	1.100	1.089
C6	H34	1.100	1.090
C6	H35	1.100	1.091
C7	H36	1.100	1.090
C7	H37	1.100	1.090
C4	H38	1.100	1.090
C4	H39	1.100	1.090
C1	H40	1.100	1.090
O2	H41	0.950	0.967

Bond Angles for 08Y

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C27	N4	C17	123.3	111.0
N4	C18	H2	109.9	109.7
N4	C18	H3	109.9	109.7
N4	C17	C23	107.9	109.6
N4	C17	C21	111.9	112.9
N4	C17	H14	111.9	107.0
C17	C23	H12	109.5	109.5
C17	C23	H13	109.5	109.5
C23	C17	H14	106.2	107.0
C18	C16	C22	111.6	108.4
C18	C16	H1	111.3	109.7
C29	N5	H15	125.8	124.7
C13	C11	H17	110.2	109.4
C22	C16	H1	106.2	109.6
C16	C22	H8	119.0	119.2
N3	C5	C8	117.0	109.9
C5	N3	H16	115.8	120.1
C14	C11	H17	108.2	109.5
C21	C22	H8	119.0	119.2
C21	C24	C30	129.9	130.2
C11	C5	C8	109.9	110.0
O1	C5	C8	101.3	106.9
O1	C2	C1	109.3	110.7
O1	C2	O2	115.2	109.9
O1	C2	N1	103.1	108.3
C5	C8	O3	122.7	125.9
C5	C8	N1	110.2	108.2
C28	C31	H11	119.9	121.3
C24	C30	C32	118.8	119.7
C24	C30	H9	120.6	120.1
C4	C7	H36	110.8	110.7
C4	C7	H37	110.8	110.9
C1	C4	H38	111.1	111.0
C1	C4	H39	111.2	111.1
C4	C1	H40	108.2	111.3
C2	C1	H40	104.7	111.8
C2	O2	H41	109.5	114.0
C7	C6	H34	110.4	109.9
C7	C6	H35	110.4	110.0
O3	C8	N1	127.1	125.9
C8	N1	C3	126.3	126.9
C31	C32	H10	117.9	117.8
C32	C30	H9	120.6	120.2
C30	C32	H10	117.9	117.9
N1	C3	C9	114.0	109.5
N1	C3	C10	103.0	109.5
N1	C3	H24	109.8	109.5
N2	C6	H34	110.4	109.9
N2	C6	H35	110.4	109.8
C10	C3	C9	105.9	109.4
C3	C9	O4	120.1	119.2
C9	C3	H24	107.0	109.4
C3	C10	C12	114.9	109.5
C10	C3	H24	117.3	109.5
C3	C10	H25	107.7	109.4
C3	C10	H26	107.7	109.5
C10	C12	C20	107.6	109.5
C12	C10	H25	107.7	109.5
C12	C10	H26	107.7	109.5
C10	C12	H27	109.6	109.5
C19	C12	H27	107.2	109.5
C20	C12	H27	110.9	109.5
C12	C20	H28	109.5	109.5
C12	C20	H29	109.4	109.5
C12	C20	H30	109.4	109.5
H2	C18	H3	109.0	109.7
H5	C27	H6	109.4	109.5
H5	C27	H7	109.5	109.5
H6	C27	H7	109.5	109.5
H12	C23	H13	109.5	109.5
H18	C14	H19	109.5	109.5
H18	C14	H20	109.4	109.5
H19	C14	H20	109.5	109.4
H21	C13	H22	109.5	109.5
H21	C13	H23	109.4	109.5
H22	C13	H23	109.5	109.4
H25	C10	H26	111.2	109.5
H28	C20	H29	109.5	109.4
H28	C20	H30	109.5	109.5
H29	C20	H30	109.5	109.5
H31	C19	H32	109.4	109.4
H31	C19	H33	109.5	109.5
H32	C19	H33	109.5	109.4
H34	C6	H35	108.5	109.8
H36	C7	H37	108.1	110.6
H38	C4	H39	107.7	111.0

Torsion Angles for 08Y

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C27	N4	C18	H2	265.4	50.1
C27	N4	C18	H3	25.3	289.5
C27	N4	C17	C23	324.7	290.6
C27	N4	C17	C21	194.7	163.2
C27	N4	C17	H14	81.2	46.2
BR	C29	N5	H15	359.7	0.1
N4	C18	C16	C22	49.8	56.2
N4	C18	C16	H1	291.4	296.5
H2	C18	N4	H3	240.0	120.6
C17	N4	C18	H2	50.7	175.5
C17	N4	C18	H3	170.6	54.9
N4	C17	C23	H12	315.0	65.1
N4	C17	C23	H13	75.1	305.0
C23	C17	N4	H14	243.5	244.4
N4	C17	C23	C21	232.8	232.9
N4	C17	C23	H14	120.1	115.6
H12	C23	C17	H13	240.0	120.1
N4	C17	C23	C25	195.0	185.0
C22	C16	C18	H1	118.4	119.7
C18	C16	C22	H8	163.6	154.2
N4	C17	C21	C23	125.2	125.4
N4	C17	C21	H14	240.4	242.9
C17	C21	C22	H8	180.3	180.0
C14	C11	C13	H17	118.3	240.1
C13	C11	C5	C8	156.1	294.1
C18	C16	C22	H1	238.5	240.2
C21	C22	C16	H8	180.0	180.1
N5	C28	C31	H11	0.2	359.8
C11	C5	N3	C8	235.3	238.8
O1	C5	N3	C8	113.6	117.4
N3	C5	C8	O3	297.0	301.7
N3	C5	C8	N1	117.2	121.7
C13	C11	C14	H17	240.4	119.9
C14	C11	C5	C8	279.0	174.1
N4	C17	C21	C22	342.4	355.3
C21	C22	C16	H1	105.1	94.0
C16	C22	C21	H8	180.0	179.9
N4	C17	C21	C24	165.2	175.4
C24	C21	C22	H8	357.6	359.9
C21	C24	C30	C32	181.4	180.5
C21	C24	C30	H9	1.4	0.4
N3	C5	C11	C8	128.8	121.2
C11	C5	N3	H16	50.9	255.4
O1	C5	C11	C8	248.2	242.5
C11	C5	C8	O3	60.8	62.9
C11	C5	C8	N1	241.0	242.9
C26	C28	C31	H11	180.0	179.9
C26	C24	C30	H9	178.4	180.3
N3	C5	O1	C8	236.4	240.7
O1	C5	N3	H16	289.2	134.0
C11	C5	O1	C8	117.1	119.4
O1	C5	C8	O3	179.5	182.3
O1	C5	C8	N1	359.7	2.4
C2	O1	C5	C8	0.5	2.3
O1	C2	C1	H40	44.6	46.7
O1	C2	O2	H41	180.0	300.7
C8	C5	N3	H16	175.6	16.6
O3	C8	C5	N1	179.8	180.0
C5	C8	N1	C3	164.0	173.5
C28	C31	C32	H10	179.7	179.8
C32	C30	C24	H9	180.0	180.1
C24	C30	C32	H10	181.1	180.0
C4	C7	C6	H34	105.0	219.9
C4	C7	C6	H35	225.0	98.8
H36	C7	C4	H37	240.0	123.2
O1	C2	C1	C4	285.9	282.7
C1	C4	C7	H36	145.0	277.2
C1	C4	C7	H37	265.0	154.1
C2	C1	C4	H40	116.7	124.3
H38	C4	C1	H39	120.0	124.1
O1	C2	C1	O2	232.0	238.3
O1	C2	C1	N1	112.2	118.0
C2	C1	C4	H38	93.6	88.0
C2	C1	C4	H39	333.6	323.9
C4	C1	C2	H40	241.3	236.0
O1	C2	O2	C1	124.7	122.2
O1	C2	O2	N1	245.1	240.4
O2	C2	C1	H40	172.6	168.4
O1	C2	N1	C1	243.8	240.4
O1	C2	N1	O2	122.6	120.5
C2	N1	C3	H24	141.4	145.0
N2	C6	C7	H34	240.0	119.5
N2	C6	C7	H35	120.0	240.5
H34	C6	C7	H35	240.0	121.0
O1	C2	C1	N2	167.5	169.5
C1	N2	C6	H34	238.5	115.7
C1	N2	C6	H35	118.5	236.7
C5	C8	O3	N1	180.2	180.1
O3	C8	N1	C3	344.2	353.6
O1	C2	N1	C8	0.4	7.6
C5	C8	N1	O3	179.8	180.0
C8	N1	C3	C9	218.5	205.5
C8	N1	C3	C10	104.2	85.5
C8	N1	C3	H24	338.5	325.5
C31	C32	C30	H9	181.1	180.1
C30	C32	C31	H10	180.0	180.0
C24	C30	C32	H9	180.0	179.9
C31	C32	C30	H10	180.0	180.0
O1	C2	N1	C3	195.2	188.1
C10	C3	N1	C9	245.7	240.0
N1	C3	C9	O4	179.6	179.6
C9	C3	N1	H24	240.0	240.0
N1	C3	C10	C12	262.9	187.0
C10	C3	N1	H24	125.7	120.0
N1	C3	C10	H25	22.9	307.0
N1	C3	C10	H26	142.8	67.0
C7	C6	N2	H34	120.0	240.5
C7	C6	N2	H35	240.0	119.6
H34	C6	N2	H35	120.0	239.1
N2	C9	C3	H24	236.3	239.5
N1	C3	C9	C10	247.5	240.0
N1	C3	C9	H24	121.5	120.1
C9	C3	C10	C12	142.9	67.0
C10	C3	C9	H24	234.1	240.1
C9	C3	C10	H25	262.9	187.0
C9	C3	C10	H26	22.8	306.9
N1	C3	C10	C9	120.0	120.1
N1	C3	C10	H24	239.4	239.9
C10	C3	C9	O4	292.2	299.6
C9	C3	C10	H24	119.4	119.9
C3	C10	C12	C20	251.2	63.7
C12	C10	C3	H25	240.0	240.0
C12	C10	C3	H26	120.0	120.0
C3	C10	C12	H27	12.0	303.6
H25	C10	C3	H26	240.0	240.0
O4	C9	C3	H24	58.1	59.5
C12	C10	C3	C9	142.9	67.0
C12	C10	C3	H24	23.5	307.1
C3	C10	C12	H25	120.0	120.0
C3	C10	C12	H26	240.0	240.0
C19	C12	C10	H27	118.5	240.0
C20	C12	C10	H27	239.2	120.0
C10	C12	C20	H28	180.0	183.8
C10	C12	C20	H29	300.0	303.8
C10	C12	C20	H30	60.0	63.8
H25	C10	C12	H26	120.0	120.0
C19	C12	C10	H25	10.4	63.7
C19	C12	C10	H26	250.4	303.7
C10	C12	C19	H27	240.1	120.0
C20	C12	C19	H27	120.8	240.0
C19	C12	C20	H28	301.6	63.9
C19	C12	C20	H29	61.6	183.9
C19	C12	C20	H30	181.6	303.9
C20	C12	C10	H25	131.2	303.7
C20	C12	C10	H26	11.2	183.7
C10	C12	C20	H27	120.0	240.0
C19	C12	C20	H27	241.5	120.0
H28	C20	C12	H29	240.0	240.0
H28	C20	C12	H30	120.0	120.0
H29	C20	C12	H30	240.0	240.0
C18	C16	H1	C22	121.7	118.9
H1	C16	C22	H8	285.1	274.0
N4	C18	H2	H3	120.5	239.5
H2	C18	C16	C22	289.8	175.9
H2	C18	C16	H1	171.4	56.2
N4	C18	H3	H2	239.5	120.5
H3	C18	C16	C22	169.8	296.5
H3	C18	C16	H1	51.4	176.8
H5	C27	N4	C17	39.8	297.4
H6	C27	H5	H7	120.0	120.0
H6	C27	N4	C17	159.8	57.4
H5	C27	H6	H7	240.0	240.0
H7	C27	N4	C17	279.8	177.3
H5	C27	H7	H6	120.0	120.0
H8	C22	C16	H1	285.1	274.0
C24	C30	H9	C32	180.0	180.1
H9	C30	C32	H10	1.1	0.1
H10	C32	C30	H9	1.1	0.1
H11	C31	C32	H10	359.7	359.8
C17	C23	H12	H13	120.0	239.9
H12	C23	C17	H14	194.9	309.5
C17	C23	H13	H12	240.0	120.0
H13	C23	C17	H14	315.0	189.4
N4	C17	H14	C23	242.5	242.7
N4	C17	H14	C21	119.6	121.0
H14	C17	C23	H12	194.9	309.5
H14	C17	C23	H13	315.0	189.4
H16	N3	C5	C8	175.6	16.6
H17	C11	C5	C8	36.8	54.0
H18	C14	C11	H17	299.5	311.1
H19	C14	H18	H20	120.0	120.0
H19	C14	C11	H17	59.6	71.1
H18	C14	H19	H20	240.1	240.0
H20	C14	C11	H17	179.5	191.0
H18	C14	H20	H19	120.0	120.0
H21	C13	C11	H17	61.7	306.4
H22	C13	H21	H23	120.0	120.0
H22	C13	C11	H17	181.8	66.5
H21	C13	H22	H23	240.0	240.0
H23	C13	C11	H17	301.7	186.4
H21	C13	H23	H22	120.0	120.0
N1	C3	H24	C9	235.8	239.9
N1	C3	H24	C10	117.0	120.0
C10	C3	H24	C9	118.8	119.9
H24	C3	C9	O4	58.1	59.5
H24	C3	C10	C12	23.5	307.1
H24	C3	C10	H25	143.5	67.1
H24	C3	C10	H26	263.5	187.1
H25	C10	C3	C9	262.9	187.0
C3	C10	H25	C12	235.5	240.0
H25	C10	C3	H24	143.5	67.1
C3	C10	H25	H26	117.8	120.0
H25	C10	C12	C20	131.2	303.7
C12	C10	H25	H26	242.2	240.0
H25	C10	C12	H27	252.0	183.7
H26	C10	C3	C9	22.8	306.9
C3	C10	H26	C12	124.5	120.0
H26	C10	C3	H24	263.5	187.1
C3	C10	H26	H25	242.3	240.0
H26	C10	C12	C20	11.2	183.7
C12	C10	H26	H25	117.7	120.0
H26	C10	C12	H27	132.0	63.7
C10	C12	H27	C20	241.2	120.0
H27	C12	C10	H25	252.0	183.7
H27	C12	C10	H26	132.0	63.7
H27	C12	C20	H28	60.0	303.9
H27	C12	C20	H29	180.0	63.9
H27	C12	C20	H30	300.0	183.9
H28	C20	C12	H27	60.0	303.9
C12	C20	H28	H29	120.0	120.0
C12	C20	H28	H30	240.0	240.0
H29	C20	H28	H30	120.0	120.0
H29	C20	C12	H27	180.0	63.9
C12	C20	H29	H28	240.0	240.0
C12	C20	H29	H30	120.0	120.0
H28	C20	H29	H30	240.0	240.0
H30	C20	C12	H27	300.0	183.9
C12	C20	H30	H28	120.0	120.0
C12	C20	H30	H29	240.0	240.0
H28	C20	H30	H29	120.0	120.0
H31	C19	C12	H27	299.9	300.0
H32	C19	H31	H33	120.0	120.0
H32	C19	C12	H27	59.9	60.0
H31	C19	H32	H33	240.0	240.0
H33	C19	C12	H27	179.9	180.0
H31	C19	H33	H32	120.0	120.0
C7	C6	H34	H35	121.2	238.8
N2	C6	H34	H35	238.9	120.9
C7	C6	H35	H34	238.8	121.1
N2	C6	H35	H34	121.1	239.0
C4	C7	H36	H37	121.6	236.7
H36	C7	C6	H34	345.0	338.3
H36	C7	C6	H35	105.0	217.3
C4	C7	H37	H36	238.4	123.2
H37	C7	C6	H34	225.0	101.3
H37	C7	C6	H35	345.0	340.3
H38	C4	C7	H36	265.0	35.2
H38	C4	C7	H37	25.0	272.0
C1	C4	H38	H39	238.0	235.8
H38	C4	C1	H40	336.9	323.7
H39	C4	C7	H36	25.0	159.2
H39	C4	C7	H37	145.0	36.0
C1	C4	H39	H38	122.0	124.1
H39	C4	C1	H40	216.9	199.6
H40	C1	C4	H38	336.9	323.7
H40	C1	C4	H39	216.9	199.6