PDB Chemical Component 08W
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 08W
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O22 |
S21 |
1.451 |
1.420 |
| O28 |
C15 |
1.221 |
1.216 |
| N19 |
S21 |
1.674 |
1.656 |
| N19 |
N16 |
1.445 |
1.401 |
| S21 |
O23 |
1.452 |
1.421 |
| S21 |
C24 |
1.815 |
1.814 |
| C15 |
N16 |
1.367 |
1.342 |
| C15 |
N13 |
1.348 |
1.344 |
| N16 |
C17 |
1.354 |
1.351 |
| N13 |
C10 |
1.424 |
1.388 |
| C17 |
O18 |
1.221 |
1.216 |
| C17 |
C9 |
1.498 |
1.474 |
| C10 |
C9 |
1.392 |
1.406 |
| C10 |
C11 |
1.396 |
1.387 |
| C9 |
C7 |
1.399 |
1.392 |
| C11 |
C5 |
1.412 |
1.379 |
| C7 |
C6 |
1.398 |
1.385 |
| C5 |
C6 |
1.410 |
1.392 |
| C5 |
C2 |
1.530 |
1.507 |
| C6 |
N29 |
1.360 |
1.403 |
| F4 |
C2 |
1.359 |
1.399 |
| C2 |
F1 |
1.340 |
1.400 |
| C2 |
F3 |
1.375 |
1.399 |
| C34 |
N29 |
1.325 |
1.361 |
| C34 |
C33 |
1.362 |
1.364 |
| N29 |
C30 |
1.307 |
1.361 |
| C33 |
C36 |
1.486 |
1.473 |
| C33 |
N32 |
1.438 |
1.357 |
| C30 |
N32 |
1.269 |
1.302 |
| N38 |
C36 |
1.358 |
1.348 |
| N38 |
C40 |
1.466 |
1.465 |
| C36 |
O37 |
1.231 |
1.217 |
| N38 |
H1 |
1.000 |
0.970 |
| C40 |
H2 |
1.100 |
1.090 |
| C40 |
H3 |
1.099 |
1.091 |
| C40 |
H4 |
1.100 |
1.090 |
| C30 |
H5 |
1.080 |
1.080 |
| C34 |
H6 |
1.080 |
1.079 |
| C7 |
H7 |
1.080 |
1.080 |
| N19 |
H8 |
1.000 |
0.970 |
| C24 |
H9 |
1.100 |
1.090 |
| C24 |
H10 |
1.100 |
1.090 |
| C24 |
H11 |
1.100 |
1.090 |
| N13 |
H12 |
1.000 |
0.971 |
| C11 |
H13 |
1.080 |
1.080 |
Bond Angles for 08W
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O28 |
C15 |
N13 |
119.1 |
118.6 |
| N19 |
S21 |
O23 |
113.9 |
104.3 |
| N19 |
S21 |
C24 |
105.8 |
104.4 |
| S21 |
N19 |
H8 |
107.6 |
120.0 |
| O23 |
S21 |
C24 |
102.7 |
110.5 |
| S21 |
C24 |
H9 |
109.5 |
109.4 |
| S21 |
C24 |
H10 |
109.4 |
109.4 |
| S21 |
C24 |
H11 |
109.5 |
109.5 |
| C15 |
N13 |
C10 |
121.9 |
120.7 |
| C15 |
N13 |
H12 |
119.1 |
119.6 |
| N13 |
C10 |
C11 |
120.8 |
121.5 |
| C10 |
N13 |
H12 |
119.1 |
119.7 |
| C10 |
C11 |
C5 |
120.9 |
119.9 |
| C10 |
C11 |
H13 |
119.5 |
120.1 |
| C9 |
C7 |
H7 |
119.7 |
120.3 |
| C11 |
C5 |
C2 |
120.6 |
119.7 |
| C5 |
C11 |
H13 |
119.6 |
120.1 |
| C5 |
C2 |
F1 |
110.7 |
109.4 |
| C5 |
C2 |
F3 |
110.4 |
109.5 |
| F1 |
C2 |
F3 |
108.4 |
109.5 |
| N29 |
C34 |
H6 |
124.9 |
126.6 |
| N29 |
C30 |
H5 |
125.6 |
125.5 |
| C40 |
N38 |
H1 |
119.2 |
120.1 |
| N38 |
C40 |
H2 |
109.5 |
109.5 |
| N38 |
C40 |
H3 |
109.5 |
109.5 |
| N38 |
C40 |
H4 |
109.5 |
109.5 |
| H2 |
C40 |
H3 |
109.4 |
109.4 |
| H2 |
C40 |
H4 |
109.4 |
109.5 |
| H3 |
C40 |
H4 |
109.5 |
109.4 |
| H9 |
C24 |
H10 |
109.5 |
109.5 |
| H9 |
C24 |
H11 |
109.5 |
109.5 |
| H10 |
C24 |
H11 |
109.5 |
109.5 |
Torsion Angles for 08W
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O22 |
S21 |
N19 |
H8 |
312.1 |
356.1 |
| O22 |
S21 |
C24 |
H9 |
180.0 |
308.4 |
| O22 |
S21 |
C24 |
H10 |
300.0 |
68.4 |
| O22 |
S21 |
C24 |
H11 |
60.0 |
188.4 |
| O28 |
C15 |
N13 |
C10 |
179.7 |
180.0 |
| O28 |
C15 |
N13 |
H12 |
359.7 |
0.0 |
| O23 |
S21 |
N19 |
C24 |
248.0 |
244.0 |
| N19 |
S21 |
C24 |
H9 |
299.7 |
60.0 |
| N19 |
S21 |
C24 |
H10 |
59.6 |
180.0 |
| N19 |
S21 |
C24 |
H11 |
179.6 |
300.0 |
| N19 |
S21 |
O23 |
C24 |
113.8 |
111.7 |
| O23 |
S21 |
N19 |
H8 |
83.6 |
124.0 |
| O23 |
S21 |
C24 |
H9 |
59.3 |
171.6 |
| O23 |
S21 |
C24 |
H10 |
179.3 |
291.6 |
| O23 |
S21 |
C24 |
H11 |
299.3 |
51.6 |
| N19 |
S21 |
C24 |
O23 |
240.3 |
248.4 |
| C24 |
S21 |
N19 |
H8 |
195.6 |
240.0 |
| H9 |
C24 |
S21 |
H10 |
240.0 |
240.0 |
| H9 |
C24 |
S21 |
H11 |
120.0 |
120.0 |
| H10 |
C24 |
S21 |
H11 |
240.0 |
240.0 |
| C15 |
N13 |
C10 |
C11 |
180.0 |
180.0 |
| C10 |
N13 |
C15 |
H12 |
180.0 |
180.0 |
| C15 |
N13 |
C10 |
H12 |
180.0 |
180.0 |
| N13 |
C10 |
C11 |
C5 |
179.4 |
179.8 |
| N13 |
C10 |
C11 |
H13 |
359.4 |
0.0 |
| C17 |
C9 |
C7 |
H7 |
359.7 |
0.0 |
| C10 |
C9 |
C7 |
H7 |
179.4 |
180.1 |
| C11 |
C10 |
N13 |
H12 |
0.0 |
360.0 |
| C10 |
C11 |
C5 |
C2 |
178.5 |
180.0 |
| C5 |
C11 |
C10 |
H13 |
180.0 |
179.8 |
| C10 |
C11 |
C5 |
H13 |
180.0 |
180.2 |
| C11 |
C5 |
C2 |
F1 |
127.7 |
353.3 |
| C11 |
C5 |
C2 |
F3 |
247.6 |
113.3 |
| C2 |
C5 |
C11 |
H13 |
358.5 |
359.8 |
| F1 |
C2 |
C5 |
F3 |
240.1 |
240.0 |
| C6 |
N29 |
C34 |
H6 |
355.7 |
359.8 |
| C6 |
N29 |
C30 |
H5 |
5.1 |
0.1 |
| C5 |
C2 |
F1 |
F3 |
121.1 |
120.0 |
| C5 |
C2 |
F3 |
F1 |
238.7 |
240.0 |
| C34 |
N29 |
C30 |
H5 |
178.0 |
179.8 |
| H2 |
C40 |
N38 |
H3 |
240.0 |
240.1 |
| H2 |
C40 |
N38 |
H4 |
120.0 |
120.1 |
| H3 |
C40 |
N38 |
H4 |
240.0 |
240.0 |
| H1 |
N38 |
C40 |
H2 |
0.0 |
240.0 |
| H1 |
N38 |
C40 |
H3 |
120.0 |
359.9 |
| H1 |
N38 |
C40 |
H4 |
240.1 |
119.9 |
| H2 |
C40 |
N38 |
H1 |
0.0 |
240.0 |
| N38 |
C40 |
H2 |
H3 |
120.0 |
120.0 |
| N38 |
C40 |
H2 |
H4 |
240.0 |
239.9 |
| H3 |
C40 |
H2 |
H4 |
120.0 |
120.0 |
| H3 |
C40 |
N38 |
H1 |
120.0 |
359.9 |
| N38 |
C40 |
H3 |
H2 |
239.9 |
240.0 |
| N38 |
C40 |
H3 |
H4 |
120.0 |
120.0 |
| H2 |
C40 |
H3 |
H4 |
240.1 |
240.0 |
| H4 |
C40 |
N38 |
H1 |
240.1 |
119.9 |
| N38 |
C40 |
H4 |
H2 |
120.0 |
120.0 |
| N38 |
C40 |
H4 |
H3 |
240.0 |
240.0 |
| H2 |
C40 |
H4 |
H3 |
119.9 |
120.0 |
| H8 |
N19 |
S21 |
O23 |
83.6 |
124.0 |
| H8 |
N19 |
S21 |
C24 |
195.6 |
240.0 |
| S21 |
C24 |
H9 |
H10 |
120.0 |
119.9 |
| S21 |
C24 |
H9 |
H11 |
240.0 |
240.0 |
| H10 |
C24 |
H9 |
H11 |
120.0 |
120.0 |
| S21 |
C24 |
H10 |
H9 |
240.0 |
240.1 |
| S21 |
C24 |
H10 |
H11 |
120.0 |
120.0 |
| H9 |
C24 |
H10 |
H11 |
240.0 |
239.9 |
| S21 |
C24 |
H11 |
H9 |
120.0 |
120.0 |
| S21 |
C24 |
H11 |
H10 |
240.0 |
240.0 |
| H9 |
C24 |
H11 |
H10 |
120.0 |
120.1 |
| C15 |
N13 |
H12 |
C10 |
180.0 |
180.0 |
| H12 |
N13 |
C10 |
C11 |
0.0 |
360.0 |
| C10 |
C11 |
H13 |
C5 |
180.0 |
179.8 |
| H13 |
C11 |
C5 |
C2 |
358.5 |
359.8 |