PDB Chemical Component 08J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 08J
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAJ |
NAN |
1.333 |
1.343 |
| CAJ |
CAS |
1.325 |
1.343 |
| NAN |
CAR |
1.330 |
1.307 |
| CAS |
CAL |
1.528 |
1.507 |
| CAS |
NAW |
1.339 |
1.365 |
| CAR |
CAA |
1.577 |
1.507 |
| CAR |
NAW |
1.358 |
1.357 |
| CAL |
NAM |
1.460 |
1.468 |
| NAW |
CAV |
1.345 |
1.398 |
| NAM |
CAO |
1.348 |
1.288 |
| CAV |
CAI |
1.396 |
1.390 |
| CAV |
CAU |
1.435 |
1.396 |
| FAB |
CAQ |
1.347 |
1.352 |
| CAO |
CAU |
1.433 |
1.467 |
| CAO |
CAT |
1.425 |
1.481 |
| CAI |
CAH |
1.389 |
1.380 |
| CAU |
CAK |
1.400 |
1.404 |
| CAQ |
CAT |
1.421 |
1.397 |
| CAQ |
CAF |
1.407 |
1.383 |
| CAT |
CAG |
1.397 |
1.395 |
| CAF |
CAD |
1.395 |
1.382 |
| CAG |
CAE |
1.401 |
1.379 |
| CAH |
CAP |
1.412 |
1.385 |
| CAK |
CAP |
1.408 |
1.377 |
| CAD |
CAE |
1.399 |
1.385 |
| CAP |
CLAC |
1.734 |
1.736 |
| CAK |
H1 |
1.080 |
1.080 |
| CAH |
H2 |
1.080 |
1.081 |
| CAI |
H3 |
1.080 |
1.080 |
| CAA |
H4 |
1.100 |
1.090 |
| CAA |
H5 |
1.100 |
1.091 |
| CAA |
H6 |
1.100 |
1.090 |
| CAJ |
H7 |
1.080 |
1.080 |
| CAL |
H8 |
1.100 |
1.089 |
| CAL |
H9 |
1.100 |
1.090 |
| CAG |
H10 |
1.080 |
1.080 |
| CAE |
H11 |
1.079 |
1.080 |
| CAD |
H12 |
1.080 |
1.080 |
| CAF |
H13 |
1.080 |
1.080 |
Bond Angles for 08J
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAJ |
CAS |
CAL |
125.8 |
127.5 |
| CAS |
CAJ |
H7 |
126.2 |
126.0 |
| CAS |
CAL |
NAM |
106.8 |
107.6 |
| CAS |
CAL |
H8 |
110.4 |
109.8 |
| CAS |
CAL |
H9 |
110.4 |
109.8 |
| CAR |
CAA |
H4 |
109.5 |
109.5 |
| CAR |
CAA |
H5 |
109.5 |
109.5 |
| CAR |
CAA |
H6 |
109.5 |
109.5 |
| CAL |
NAM |
CAO |
127.3 |
121.8 |
| NAM |
CAL |
H8 |
110.4 |
109.9 |
| NAM |
CAL |
H9 |
110.4 |
109.8 |
| NAM |
CAO |
CAT |
113.1 |
116.0 |
| CAV |
CAI |
H3 |
120.5 |
119.8 |
| CAO |
CAT |
CAG |
119.4 |
120.1 |
| CAI |
CAH |
H2 |
119.6 |
120.0 |
| CAU |
CAK |
CAP |
119.3 |
120.6 |
| CAU |
CAK |
H1 |
120.3 |
119.7 |
| CAQ |
CAF |
H13 |
119.9 |
119.9 |
| CAT |
CAG |
CAE |
121.7 |
119.9 |
| CAT |
CAG |
H10 |
119.2 |
120.1 |
| CAF |
CAD |
H12 |
120.5 |
119.8 |
| CAE |
CAG |
H10 |
119.2 |
120.0 |
| CAG |
CAE |
H11 |
119.7 |
119.9 |
| CAK |
CAP |
CLAC |
123.1 |
119.9 |
| CAP |
CAK |
H1 |
120.4 |
119.7 |
| CAD |
CAE |
H11 |
119.7 |
119.9 |
| H4 |
CAA |
H5 |
109.4 |
109.4 |
| H4 |
CAA |
H6 |
109.5 |
109.5 |
| H5 |
CAA |
H6 |
109.5 |
109.4 |
| H8 |
CAL |
H9 |
108.6 |
109.9 |
Torsion Angles for 08J
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAJ |
CAS |
CAL |
NAM |
239.8 |
120.3 |
| CAJ |
CAS |
CAL |
H8 |
359.8 |
239.9 |
| CAJ |
CAS |
CAL |
H9 |
119.7 |
0.8 |
| NAN |
CAR |
CAA |
H4 |
0.0 |
264.2 |
| NAN |
CAR |
CAA |
H5 |
120.0 |
24.2 |
| NAN |
CAR |
CAA |
H6 |
240.0 |
144.2 |
| CAL |
CAS |
CAJ |
H7 |
358.2 |
1.5 |
| CAS |
CAL |
NAM |
CAO |
295.6 |
61.1 |
| NAM |
CAL |
CAS |
H8 |
240.0 |
240.4 |
| NAM |
CAL |
CAS |
H9 |
120.0 |
119.5 |
| H8 |
CAL |
CAS |
H9 |
240.0 |
239.1 |
| H4 |
CAA |
CAR |
H5 |
240.0 |
240.0 |
| H4 |
CAA |
CAR |
H6 |
120.0 |
120.1 |
| H5 |
CAA |
CAR |
H6 |
240.0 |
240.0 |
| CAS |
CAL |
NAM |
H8 |
120.0 |
119.5 |
| CAS |
CAL |
NAM |
H9 |
240.0 |
240.5 |
| CAL |
NAM |
CAO |
CAT |
177.9 |
178.9 |
| H8 |
CAL |
NAM |
H9 |
120.0 |
121.0 |
| NAW |
CAV |
CAI |
H3 |
0.6 |
357.3 |
| CAO |
NAM |
CAL |
H8 |
175.6 |
301.5 |
| CAO |
NAM |
CAL |
H9 |
55.6 |
180.6 |
| NAM |
CAO |
CAT |
CAG |
228.1 |
294.6 |
| CAV |
CAI |
CAH |
H2 |
182.5 |
180.1 |
| CAV |
CAU |
CAK |
H1 |
180.1 |
178.9 |
| FAB |
CAQ |
CAF |
H13 |
0.5 |
0.0 |
| CAO |
CAU |
CAK |
H1 |
359.3 |
357.6 |
| CAO |
CAT |
CAG |
CAE |
178.7 |
180.0 |
| CAO |
CAT |
CAG |
H10 |
358.7 |
360.0 |
| CAU |
CAK |
CAP |
CLAC |
179.1 |
180.0 |
| CAP |
CAK |
CAU |
H1 |
180.0 |
180.0 |
| CAQ |
CAT |
CAG |
H10 |
181.6 |
180.2 |
| CAQ |
CAF |
CAD |
H12 |
179.9 |
179.7 |
| CAE |
CAG |
CAT |
H10 |
180.0 |
180.1 |
| CAT |
CAG |
CAE |
H11 |
179.1 |
180.0 |
| CAF |
CAD |
CAE |
H11 |
180.1 |
180.0 |
| CAT |
CAG |
CAE |
H10 |
180.0 |
179.9 |
| CAD |
CAE |
CAG |
H11 |
180.0 |
180.0 |
| CAH |
CAP |
CAK |
H1 |
180.0 |
179.9 |
| CAU |
CAK |
CAP |
H1 |
180.0 |
180.0 |
| CAD |
CAE |
CAG |
H10 |
179.1 |
180.1 |
| CAG |
CAE |
CAD |
H11 |
180.0 |
180.0 |
| CLAC |
CAP |
CAK |
H1 |
359.1 |
0.0 |
| CAU |
CAK |
H1 |
CAP |
180.0 |
180.0 |
| H1 |
CAK |
CAP |
CLAC |
359.1 |
0.0 |
| H3 |
CAI |
CAH |
H2 |
2.5 |
0.1 |
| CAR |
CAA |
H4 |
H5 |
120.0 |
120.0 |
| CAR |
CAA |
H4 |
H6 |
240.0 |
239.9 |
| H5 |
CAA |
H4 |
H6 |
120.0 |
119.9 |
| CAR |
CAA |
H5 |
H4 |
240.0 |
239.9 |
| CAR |
CAA |
H5 |
H6 |
120.0 |
120.0 |
| H4 |
CAA |
H5 |
H6 |
240.0 |
240.1 |
| CAR |
CAA |
H6 |
H4 |
120.0 |
120.1 |
| CAR |
CAA |
H6 |
H5 |
240.0 |
240.0 |
| H4 |
CAA |
H6 |
H5 |
120.0 |
119.9 |
| H7 |
CAJ |
CAS |
CAL |
358.2 |
1.5 |
| CAS |
CAL |
H8 |
NAM |
242.1 |
241.8 |
| CAS |
CAL |
H8 |
H9 |
121.0 |
120.9 |
| H8 |
CAL |
NAM |
CAO |
175.6 |
301.5 |
| NAM |
CAL |
H8 |
H9 |
238.9 |
239.1 |
| CAS |
CAL |
H9 |
NAM |
117.9 |
118.1 |
| CAS |
CAL |
H9 |
H8 |
238.9 |
239.1 |
| H9 |
CAL |
NAM |
CAO |
55.6 |
180.6 |
| NAM |
CAL |
H9 |
H8 |
121.1 |
121.0 |
| CAT |
CAG |
H10 |
CAE |
180.0 |
180.1 |
| H10 |
CAG |
CAE |
H11 |
359.1 |
0.1 |
| H11 |
CAE |
CAG |
H10 |
359.1 |
0.1 |
| H12 |
CAD |
CAE |
H11 |
0.1 |
0.0 |
| H13 |
CAF |
CAD |
H12 |
359.9 |
360.0 |