PDB Chemical Component 08E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 08E
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C22 |
N23 |
1.359 |
1.320 |
| C22 |
C21 |
1.376 |
1.380 |
| N23 |
C24 |
1.359 |
1.324 |
| C21 |
C20 |
1.394 |
1.388 |
| O13 |
C11 |
1.221 |
1.217 |
| C24 |
N27 |
1.393 |
1.389 |
| C24 |
C25 |
1.394 |
1.391 |
| C20 |
C12 |
1.497 |
1.508 |
| C20 |
C25 |
1.411 |
1.383 |
| O14 |
C11 |
1.342 |
1.349 |
| C11 |
C7 |
1.460 |
1.463 |
| C12 |
N6 |
1.453 |
1.464 |
| O28 |
C15 |
1.252 |
1.220 |
| C7 |
N6 |
1.373 |
1.382 |
| C7 |
C8 |
1.397 |
1.386 |
| N6 |
C5 |
1.364 |
1.376 |
| C15 |
N16 |
1.375 |
1.347 |
| C15 |
C1 |
1.519 |
1.418 |
| N16 |
C19 |
1.377 |
1.357 |
| C8 |
C1 |
1.436 |
1.475 |
| C8 |
C4 |
1.421 |
1.469 |
| C5 |
C10 |
1.403 |
1.393 |
| C5 |
C4 |
1.396 |
1.406 |
| C1 |
C17 |
1.353 |
1.391 |
| C19 |
C18 |
1.345 |
1.356 |
| C10 |
C9 |
1.399 |
1.376 |
| C4 |
C2 |
1.416 |
1.397 |
| C17 |
C18 |
1.452 |
1.396 |
| C9 |
C3 |
1.396 |
1.390 |
| C2 |
C3 |
1.402 |
1.377 |
| C3 |
CL2 |
1.736 |
1.736 |
| C10 |
H1 |
1.080 |
1.080 |
| C9 |
H2 |
1.080 |
1.080 |
| C21 |
H3 |
1.080 |
1.081 |
| C2 |
H4 |
1.080 |
1.080 |
| C25 |
H5 |
1.080 |
1.080 |
| C22 |
H6 |
1.080 |
1.080 |
| C18 |
H7 |
1.080 |
1.080 |
| C17 |
H8 |
1.080 |
1.080 |
| C19 |
H9 |
1.080 |
1.080 |
| C12 |
H11 |
1.100 |
1.090 |
| C12 |
H12 |
1.100 |
1.090 |
| N27 |
H13 |
1.000 |
0.970 |
| N27 |
H14 |
1.000 |
0.970 |
| O14 |
H15 |
0.950 |
0.967 |
| N16 |
H10 |
1.001 |
0.969 |
Bond Angles for 08E
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C22 |
N23 |
C24 |
117.9 |
121.7 |
| N23 |
C22 |
H6 |
117.8 |
119.5 |
| C22 |
C21 |
C20 |
117.4 |
119.3 |
| C22 |
C21 |
H3 |
121.3 |
120.4 |
| N23 |
C24 |
N27 |
118.2 |
119.7 |
| C21 |
C20 |
C12 |
115.4 |
120.7 |
| C21 |
C20 |
C25 |
119.8 |
118.5 |
| C20 |
C21 |
H3 |
121.3 |
120.3 |
| C24 |
N27 |
H13 |
109.5 |
120.0 |
| C24 |
N27 |
H14 |
109.5 |
120.0 |
| C24 |
C25 |
H5 |
120.6 |
120.4 |
| C20 |
C12 |
N6 |
111.3 |
109.5 |
| C20 |
C12 |
H11 |
108.8 |
109.4 |
| C20 |
C12 |
H12 |
108.9 |
109.4 |
| C20 |
C25 |
H5 |
120.6 |
120.5 |
| C11 |
C7 |
N6 |
121.9 |
125.6 |
| C7 |
N6 |
C12 |
124.7 |
124.9 |
| N6 |
C12 |
H11 |
108.9 |
109.5 |
| N6 |
C12 |
H12 |
108.8 |
109.5 |
| C7 |
C8 |
C1 |
127.0 |
126.8 |
| C15 |
N16 |
H10 |
118.0 |
119.5 |
| N16 |
C19 |
H9 |
119.7 |
119.4 |
| C8 |
C1 |
C17 |
123.9 |
120.6 |
| C5 |
C10 |
H1 |
121.4 |
120.0 |
| C1 |
C17 |
H8 |
119.1 |
120.5 |
| C19 |
C18 |
H7 |
120.3 |
119.9 |
| C10 |
C9 |
C3 |
120.9 |
120.7 |
| C9 |
C10 |
H1 |
121.4 |
120.0 |
| C10 |
C9 |
H2 |
119.6 |
119.6 |
| C4 |
C2 |
C3 |
118.9 |
119.7 |
| C4 |
C2 |
H4 |
120.5 |
120.2 |
| C17 |
C18 |
H7 |
120.3 |
120.0 |
| C9 |
C3 |
C2 |
121.3 |
120.3 |
| C9 |
C3 |
CL2 |
119.6 |
119.8 |
| C3 |
C9 |
H2 |
119.6 |
119.7 |
| C2 |
C3 |
CL2 |
119.1 |
119.9 |
| C3 |
C2 |
H4 |
120.6 |
120.1 |
| H11 |
C12 |
H12 |
110.1 |
109.5 |
| H13 |
N27 |
H14 |
109.5 |
120.0 |
Torsion Angles for 08E
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N23 |
C22 |
C21 |
C20 |
359.5 |
360.0 |
| N23 |
C22 |
C21 |
H3 |
179.5 |
179.7 |
| C22 |
N23 |
C24 |
N27 |
179.2 |
180.3 |
| C22 |
C21 |
C20 |
C12 |
180.4 |
179.7 |
| C22 |
C21 |
C20 |
C25 |
0.1 |
359.7 |
| C20 |
C21 |
C22 |
H3 |
180.0 |
180.3 |
| C24 |
N23 |
C22 |
H6 |
180.6 |
180.0 |
| N23 |
C24 |
N27 |
H13 |
360.0 |
180.0 |
| N23 |
C24 |
N27 |
H14 |
120.0 |
360.0 |
| N23 |
C24 |
C25 |
H5 |
179.9 |
180.0 |
| C22 |
C21 |
C20 |
H3 |
180.0 |
179.7 |
| C21 |
C20 |
C12 |
N6 |
197.5 |
90.0 |
| C21 |
C20 |
C12 |
H11 |
317.5 |
210.0 |
| C21 |
C20 |
C12 |
H12 |
77.5 |
330.0 |
| C21 |
C20 |
C25 |
H5 |
180.2 |
180.0 |
| N27 |
C24 |
C25 |
H5 |
0.5 |
360.0 |
| H13 |
N27 |
C24 |
H14 |
240.0 |
180.0 |
| C20 |
C25 |
C24 |
H5 |
180.0 |
179.4 |
| C21 |
C20 |
C12 |
C25 |
179.7 |
180.0 |
| C12 |
C20 |
C21 |
H3 |
0.4 |
0.0 |
| C12 |
C20 |
C25 |
H5 |
359.9 |
360.0 |
| C7 |
N6 |
C12 |
C20 |
72.3 |
90.0 |
| N6 |
C12 |
C20 |
H11 |
240.0 |
240.0 |
| N6 |
C12 |
C20 |
H12 |
120.0 |
120.0 |
| H11 |
C12 |
C20 |
H12 |
240.0 |
240.0 |
| C21 |
C20 |
C25 |
C12 |
180.3 |
180.0 |
| C25 |
C20 |
C21 |
H3 |
180.1 |
180.0 |
| C24 |
C25 |
C20 |
H5 |
180.0 |
180.6 |
| C11 |
C7 |
N6 |
C12 |
359.9 |
0.1 |
| C20 |
C12 |
N6 |
H11 |
120.0 |
120.0 |
| C20 |
C12 |
N6 |
H12 |
240.0 |
240.0 |
| H11 |
C12 |
N6 |
H12 |
120.0 |
120.1 |
| O28 |
C15 |
N16 |
H10 |
358.7 |
359.7 |
| C20 |
C12 |
N6 |
C7 |
72.3 |
90.0 |
| C7 |
N6 |
C12 |
H11 |
312.2 |
330.0 |
| C7 |
N6 |
C12 |
H12 |
192.3 |
209.9 |
| N6 |
C7 |
C8 |
C1 |
181.8 |
180.8 |
| C7 |
C8 |
C1 |
C17 |
224.7 |
269.2 |
| C20 |
C12 |
N6 |
C5 |
252.0 |
270.0 |
| N6 |
C5 |
C10 |
H1 |
0.7 |
0.3 |
| C15 |
N16 |
C19 |
H9 |
179.1 |
180.0 |
| C15 |
C1 |
C17 |
H8 |
178.5 |
180.0 |
| N16 |
C19 |
C18 |
H7 |
181.5 |
180.0 |
| C8 |
C1 |
C17 |
H8 |
1.0 |
360.0 |
| C8 |
C4 |
C2 |
C3 |
179.2 |
180.0 |
| C8 |
C4 |
C2 |
H4 |
359.1 |
359.5 |
| C5 |
C10 |
C9 |
C3 |
359.6 |
0.2 |
| C9 |
C10 |
C5 |
H1 |
180.0 |
179.7 |
| C5 |
C10 |
C9 |
H2 |
179.5 |
180.3 |
| C4 |
C5 |
C10 |
H1 |
179.7 |
180.3 |
| C5 |
C4 |
C2 |
C3 |
359.7 |
0.9 |
| C5 |
C4 |
C2 |
H4 |
179.7 |
180.3 |
| C1 |
C17 |
C18 |
H7 |
179.7 |
180.0 |
| C17 |
C18 |
C19 |
H7 |
180.0 |
179.8 |
| C5 |
C10 |
C9 |
H1 |
180.0 |
180.3 |
| C10 |
C9 |
C3 |
C2 |
0.7 |
0.1 |
| C10 |
C9 |
C3 |
CL2 |
179.4 |
180.0 |
| C3 |
C9 |
C10 |
H2 |
180.0 |
179.9 |
| C9 |
C3 |
C2 |
C4 |
359.6 |
359.4 |
| C4 |
C2 |
C3 |
CL2 |
181.0 |
179.5 |
| C3 |
C2 |
C4 |
H4 |
180.0 |
180.5 |
| C8 |
C1 |
C17 |
C18 |
181.0 |
179.9 |
| C19 |
C18 |
C17 |
H7 |
180.0 |
180.2 |
| C3 |
C9 |
C10 |
H1 |
179.6 |
180.0 |
| C10 |
C9 |
C3 |
H2 |
180.0 |
180.1 |
| C4 |
C2 |
C3 |
C9 |
359.6 |
359.4 |
| C2 |
C3 |
C9 |
CL2 |
181.4 |
180.1 |
| C9 |
C3 |
C2 |
H4 |
179.7 |
179.9 |
| C4 |
C2 |
C3 |
H4 |
180.0 |
179.5 |
| C9 |
C3 |
C2 |
CL2 |
178.6 |
179.9 |
| C2 |
C3 |
C9 |
H2 |
180.8 |
180.0 |
| C9 |
C3 |
CL2 |
C2 |
181.3 |
180.1 |
| CL2 |
C3 |
C9 |
H2 |
359.4 |
359.9 |
| CL2 |
C3 |
C2 |
H4 |
1.0 |
0.0 |
| H1 |
C10 |
C9 |
C3 |
179.6 |
180.0 |
| H1 |
C10 |
C9 |
H2 |
359.6 |
0.0 |
| C10 |
C9 |
H2 |
C3 |
180.0 |
179.9 |
| H2 |
C9 |
C10 |
H1 |
359.6 |
0.0 |
| H2 |
C9 |
C3 |
C2 |
180.8 |
180.0 |
| H2 |
C9 |
C3 |
CL2 |
359.4 |
359.9 |
| C22 |
C21 |
H3 |
C20 |
180.0 |
180.3 |
| H3 |
C21 |
C20 |
C12 |
0.4 |
0.0 |
| H3 |
C21 |
C20 |
C25 |
180.1 |
180.0 |
| C4 |
C2 |
H4 |
C3 |
180.0 |
180.5 |
| H4 |
C2 |
C3 |
CL2 |
1.0 |
0.0 |
| H6 |
C22 |
N23 |
C24 |
180.6 |
180.0 |
| H6 |
C22 |
C21 |
C20 |
179.5 |
180.0 |
| H6 |
C22 |
C21 |
H3 |
359.5 |
359.7 |
| H8 |
C17 |
C18 |
H7 |
359.7 |
360.0 |
| H9 |
C19 |
C18 |
H7 |
1.5 |
359.9 |
| C20 |
C12 |
H11 |
N6 |
238.5 |
240.0 |
| C20 |
C12 |
H11 |
H12 |
119.2 |
119.9 |
| N6 |
C12 |
H11 |
H12 |
240.8 |
239.9 |
| C20 |
C12 |
H12 |
N6 |
121.5 |
120.0 |
| C20 |
C12 |
H12 |
H11 |
240.8 |
240.1 |
| N6 |
C12 |
H12 |
H11 |
119.3 |
120.1 |
| C24 |
N27 |
H13 |
H14 |
120.0 |
180.0 |
| C24 |
N27 |
H14 |
H13 |
240.0 |
180.0 |
| H10 |
N16 |
C19 |
H9 |
359.1 |
0.3 |