PDB Chemical Component 08D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 08D
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N7 |
C1 |
1.355 |
1.397 |
| C6 |
C1 |
1.396 |
1.389 |
| C6 |
C5 |
1.394 |
1.381 |
| C1 |
C2 |
1.396 |
1.389 |
| C5 |
C4 |
1.397 |
1.383 |
| C2 |
C3 |
1.391 |
1.381 |
| C4 |
C3 |
1.398 |
1.383 |
| C4 |
S10 |
1.601 |
1.762 |
| N13 |
C15 |
1.360 |
1.392 |
| N13 |
S10 |
1.605 |
1.656 |
| C15 |
C16 |
1.401 |
1.421 |
| C15 |
N19 |
1.367 |
1.308 |
| C16 |
C17 |
1.380 |
1.352 |
| N19 |
O18 |
1.337 |
1.210 |
| C17 |
O18 |
1.354 |
1.341 |
| C17 |
C20 |
1.505 |
1.507 |
| S10 |
O12 |
1.433 |
1.421 |
| S10 |
O11 |
1.438 |
1.420 |
| C3 |
H1 |
1.079 |
1.080 |
| C2 |
H2 |
1.080 |
1.080 |
| C5 |
H3 |
1.080 |
1.080 |
| C6 |
H4 |
1.080 |
1.080 |
| N7 |
H5 |
1.000 |
0.970 |
| N7 |
H6 |
1.000 |
0.970 |
| N13 |
H7 |
1.000 |
0.969 |
| C16 |
H8 |
1.080 |
1.080 |
| C20 |
H9 |
1.100 |
1.091 |
| C20 |
H10 |
1.100 |
1.090 |
| C20 |
H11 |
1.100 |
1.090 |
Bond Angles for 08D
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C6 |
H4 |
120.1 |
120.0 |
| C6 |
C5 |
H3 |
120.0 |
119.9 |
| C1 |
C2 |
H2 |
120.2 |
120.0 |
| C2 |
C3 |
H1 |
119.8 |
119.9 |
| C4 |
C3 |
H1 |
119.9 |
120.0 |
| N13 |
C15 |
C16 |
131.5 |
126.9 |
| N13 |
C15 |
N19 |
116.0 |
126.9 |
| C15 |
N13 |
H7 |
105.6 |
120.0 |
| N19 |
C15 |
C16 |
112.5 |
106.2 |
| C15 |
C16 |
C17 |
101.3 |
104.0 |
| C15 |
C16 |
H8 |
129.3 |
128.0 |
| C15 |
N19 |
O18 |
105.4 |
111.4 |
| C16 |
C17 |
C20 |
124.7 |
126.7 |
| C17 |
C20 |
H9 |
109.5 |
109.5 |
| C17 |
C20 |
H10 |
109.5 |
109.5 |
| C17 |
C20 |
H11 |
109.4 |
109.5 |
| H5 |
N7 |
H6 |
109.5 |
119.9 |
| H9 |
C20 |
H10 |
109.4 |
109.4 |
| H9 |
C20 |
H11 |
109.5 |
109.5 |
| H10 |
C20 |
H11 |
109.5 |
109.5 |
Torsion Angles for 08D
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N7 |
C1 |
C6 |
H4 |
0.2 |
359.4 |
| N7 |
C1 |
C2 |
H2 |
359.8 |
0.2 |
| C1 |
C6 |
C5 |
H3 |
179.8 |
179.5 |
| C6 |
C1 |
C2 |
H2 |
180.0 |
179.5 |
| C1 |
C2 |
C3 |
H1 |
180.1 |
180.0 |
| C5 |
C4 |
C3 |
H1 |
179.8 |
180.3 |
| C4 |
C3 |
C2 |
H1 |
180.0 |
180.0 |
| C2 |
C3 |
C4 |
H1 |
180.0 |
180.0 |
| N19 |
C15 |
N13 |
C16 |
181.0 |
180.3 |
| N13 |
C15 |
C16 |
C17 |
180.8 |
179.8 |
| N13 |
C15 |
C16 |
H8 |
0.8 |
359.9 |
| N13 |
C15 |
N19 |
O18 |
179.4 |
180.0 |
| N13 |
C15 |
C16 |
N19 |
180.9 |
180.2 |
| C16 |
C15 |
N13 |
H7 |
329.4 |
0.1 |
| C16 |
C15 |
N19 |
O18 |
0.2 |
0.3 |
| C15 |
C16 |
C17 |
C20 |
180.3 |
180.1 |
| N13 |
C15 |
N19 |
C16 |
179.2 |
179.8 |
| N19 |
C15 |
N13 |
H7 |
150.3 |
180.4 |
| N19 |
C15 |
C16 |
C17 |
359.9 |
359.6 |
| N19 |
C15 |
C16 |
H8 |
179.9 |
179.6 |
| C15 |
C16 |
C17 |
H8 |
180.0 |
180.0 |
| C16 |
C17 |
C20 |
H9 |
179.8 |
180.3 |
| C16 |
C17 |
C20 |
H10 |
299.8 |
300.3 |
| C16 |
C17 |
C20 |
H11 |
59.8 |
60.4 |
| O18 |
N19 |
C15 |
C16 |
0.2 |
0.3 |
| C15 |
C16 |
C17 |
O18 |
0.1 |
0.4 |
| H9 |
C20 |
C17 |
H10 |
240.0 |
240.1 |
| H9 |
C20 |
C17 |
H11 |
120.0 |
120.0 |
| H10 |
C20 |
C17 |
H11 |
240.0 |
239.9 |
| H2 |
C2 |
C3 |
H1 |
0.1 |
360.0 |
| H4 |
C6 |
C5 |
H3 |
359.8 |
0.1 |
| H7 |
N13 |
C15 |
C16 |
329.4 |
0.1 |
| H7 |
N13 |
C15 |
N19 |
150.3 |
180.4 |
| C15 |
C16 |
H8 |
C17 |
180.0 |
179.9 |
| H8 |
C16 |
C17 |
C20 |
0.3 |
0.1 |
| C17 |
C20 |
H9 |
H10 |
120.0 |
120.0 |
| C17 |
C20 |
H9 |
H11 |
240.0 |
240.0 |
| H10 |
C20 |
H9 |
H11 |
120.0 |
120.0 |
| C17 |
C20 |
H10 |
H9 |
240.0 |
240.0 |
| C17 |
C20 |
H10 |
H11 |
120.0 |
120.1 |
| H9 |
C20 |
H10 |
H11 |
240.0 |
240.0 |
| C17 |
C20 |
H11 |
H9 |
120.0 |
120.0 |
| C17 |
C20 |
H11 |
H10 |
240.0 |
239.9 |
| H9 |
C20 |
H11 |
H10 |
120.0 |
119.9 |