PDB Chemical Component 087
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 087
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.499 |
1.506 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| CL1 |
C21 |
1.730 |
1.735 |
| C2 |
C3 |
1.359 |
1.355 |
| C2 |
N6 |
1.362 |
1.357 |
| CL2 |
C4 |
1.724 |
1.736 |
| C3 |
C4 |
1.404 |
1.401 |
| CL3 |
C3 |
1.760 |
1.735 |
| C4 |
C5 |
1.393 |
1.380 |
| C5 |
N6 |
1.380 |
1.379 |
| C5 |
C8 |
1.470 |
1.465 |
| N10 |
C8 |
1.364 |
1.348 |
| C8 |
O9 |
1.232 |
1.217 |
| N10 |
C11 |
1.469 |
1.465 |
| N10 |
HN10 |
1.000 |
0.969 |
| C12 |
C11 |
1.540 |
1.531 |
| C16 |
C11 |
1.544 |
1.531 |
| C11 |
H11 |
1.100 |
1.090 |
| C12 |
C13 |
1.541 |
1.530 |
| C12 |
H12 |
1.100 |
1.090 |
| C12 |
H12A |
1.100 |
1.090 |
| N14 |
C13 |
1.474 |
1.468 |
| C13 |
H13 |
1.100 |
1.090 |
| C13 |
H13A |
1.100 |
1.090 |
| C17 |
N14 |
1.390 |
1.390 |
| N14 |
C15 |
1.464 |
1.469 |
| C16 |
C15 |
1.536 |
1.530 |
| C15 |
H15 |
1.100 |
1.091 |
| C15 |
H15A |
1.100 |
1.090 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| N22 |
C17 |
1.314 |
1.324 |
| C17 |
C18 |
1.400 |
1.390 |
| C19 |
C18 |
1.399 |
1.396 |
| C18 |
H18 |
1.080 |
1.080 |
| C20 |
C19 |
1.406 |
1.400 |
| C19 |
C24 |
1.489 |
1.481 |
| C21 |
C20 |
1.388 |
1.381 |
| C20 |
H20 |
1.080 |
1.080 |
| C21 |
N22 |
1.316 |
1.320 |
| C24 |
O25 |
1.218 |
1.215 |
| C24 |
N26 |
1.350 |
1.348 |
| N26 |
HN26 |
1.000 |
0.970 |
| N26 |
HN2A |
1.000 |
0.970 |
| N6 |
HN6 |
0.999 |
0.969 |
Bond Angles for 087
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
C1 |
H1 |
109.5 |
109.4 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.5 |
| C1 |
C2 |
C3 |
127.1 |
125.6 |
| C1 |
C2 |
N6 |
123.1 |
125.5 |
| H1 |
C1 |
H1A |
109.5 |
109.5 |
| H1 |
C1 |
H1B |
109.5 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| CL1 |
C21 |
C20 |
122.1 |
119.5 |
| CL1 |
C21 |
N22 |
116.1 |
119.5 |
| C3 |
C2 |
N6 |
109.8 |
108.9 |
| C2 |
C3 |
C4 |
106.3 |
107.9 |
| C2 |
N6 |
C5 |
109.1 |
108.7 |
| C2 |
N6 |
HN6 |
125.4 |
125.7 |
| CL2 |
C4 |
C3 |
122.1 |
126.4 |
| CL2 |
C4 |
C5 |
129.1 |
126.5 |
| CL3 |
C3 |
C4 |
125.2 |
126.1 |
| C3 |
C4 |
C5 |
108.8 |
107.1 |
| C4 |
C5 |
N6 |
106.0 |
107.5 |
| C4 |
C5 |
C8 |
131.2 |
126.2 |
| N6 |
C5 |
C8 |
122.7 |
126.3 |
| C5 |
N6 |
HN6 |
125.4 |
125.6 |
| C5 |
C8 |
O9 |
117.9 |
120.0 |
| C11 |
N10 |
HN10 |
119.4 |
120.0 |
| N10 |
C11 |
H11 |
112.3 |
109.5 |
| C12 |
C11 |
H11 |
107.7 |
109.5 |
| C16 |
C11 |
H11 |
110.2 |
109.5 |
| C13 |
C12 |
H12 |
108.9 |
109.5 |
| C13 |
C12 |
H12A |
108.9 |
109.5 |
| C12 |
C13 |
H13 |
109.7 |
109.5 |
| C12 |
C13 |
H13A |
109.7 |
109.5 |
| H12 |
C12 |
H12A |
110.0 |
109.5 |
| N14 |
C13 |
H13 |
109.7 |
109.5 |
| N14 |
C13 |
H13A |
109.7 |
109.4 |
| H13 |
C13 |
H13A |
109.2 |
109.4 |
| N14 |
C15 |
H15 |
110.6 |
109.5 |
| N14 |
C15 |
H15A |
110.6 |
109.5 |
| C16 |
C15 |
H15 |
110.6 |
109.4 |
| C16 |
C15 |
H15A |
110.6 |
109.5 |
| H15 |
C15 |
H15A |
108.3 |
109.5 |
| H16 |
C16 |
H16A |
110.1 |
109.6 |
| C17 |
C18 |
H18 |
120.1 |
120.5 |
| C19 |
C18 |
H18 |
120.1 |
120.4 |
| C20 |
C19 |
C24 |
121.9 |
120.9 |
| C19 |
C24 |
O25 |
120.5 |
120.0 |
| C19 |
C24 |
N26 |
120.9 |
120.0 |
| C21 |
C20 |
H20 |
120.6 |
120.4 |
| O25 |
C24 |
N26 |
118.6 |
120.0 |
| C24 |
N26 |
HN26 |
120.0 |
120.0 |
| C24 |
N26 |
HN2A |
120.0 |
120.0 |
| HN26 |
N26 |
HN2A |
120.0 |
120.0 |
Torsion Angles for 087
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
C2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
| C3 |
C2 |
C1 |
N6 |
181.7 |
180.2 |
| C1 |
C2 |
C3 |
C4 |
178.9 |
180.0 |
| C1 |
C2 |
N6 |
C5 |
180.2 |
179.9 |
| C1 |
C2 |
N6 |
HN6 |
0.2 |
360.0 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
C3 |
90.9 |
90.0 |
| H1 |
C1 |
C2 |
N6 |
269.2 |
269.7 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| C2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
C3 |
210.9 |
210.0 |
| H1A |
C1 |
C2 |
N6 |
29.2 |
29.8 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
C3 |
330.9 |
330.0 |
| H1B |
C1 |
C2 |
N6 |
149.2 |
149.8 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| CL1 |
C21 |
C20 |
H20 |
0.2 |
360.0 |
| C3 |
C2 |
C1 |
H1 |
90.9 |
90.0 |
| C3 |
C2 |
C1 |
H1A |
210.9 |
210.0 |
| C3 |
C2 |
C1 |
H1B |
330.9 |
330.0 |
| C1 |
C2 |
C3 |
N6 |
178.5 |
179.8 |
| C3 |
C2 |
N6 |
C5 |
358.8 |
359.7 |
| C3 |
C2 |
N6 |
HN6 |
178.8 |
179.8 |
| CL2 |
C4 |
C3 |
C2 |
178.9 |
180.0 |
| CL3 |
C3 |
C2 |
C4 |
179.5 |
180.1 |
| C2 |
C3 |
C4 |
C5 |
0.5 |
0.1 |
| N6 |
C2 |
C1 |
H1 |
269.2 |
269.7 |
| N6 |
C2 |
C1 |
H1A |
29.2 |
29.8 |
| N6 |
C2 |
C1 |
H1B |
149.2 |
149.8 |
| C1 |
C2 |
N6 |
C3 |
181.4 |
180.2 |
| N6 |
C2 |
C3 |
C4 |
0.4 |
0.2 |
| C4 |
C5 |
N6 |
C2 |
1.4 |
0.4 |
| C2 |
N6 |
C5 |
C8 |
179.1 |
180.2 |
| C5 |
N6 |
C2 |
HN6 |
180.0 |
179.9 |
| C2 |
C3 |
C4 |
CL2 |
178.9 |
180.0 |
| CL3 |
C3 |
C4 |
CL2 |
359.3 |
359.9 |
| C3 |
C4 |
CL2 |
C5 |
182.0 |
180.1 |
| CL2 |
C4 |
C5 |
N6 |
180.6 |
179.8 |
| CL2 |
C4 |
C5 |
C8 |
3.3 |
0.0 |
| C4 |
C3 |
C2 |
N6 |
0.4 |
0.2 |
| CL2 |
C4 |
C3 |
C5 |
178.4 |
179.9 |
| C3 |
C4 |
C5 |
N6 |
358.8 |
359.7 |
| C3 |
C4 |
C5 |
C8 |
181.5 |
180.0 |
| CL3 |
C3 |
C2 |
N6 |
180.0 |
180.3 |
| C2 |
C3 |
CL3 |
C4 |
180.5 |
179.9 |
| CL2 |
C4 |
C3 |
CL3 |
359.3 |
359.9 |
| CL3 |
C3 |
C4 |
C5 |
180.9 |
180.0 |
| C2 |
N6 |
C5 |
C4 |
1.4 |
0.4 |
| CL2 |
C4 |
C5 |
C3 |
181.8 |
180.1 |
| N6 |
C5 |
C4 |
C8 |
177.4 |
179.8 |
| C4 |
C5 |
N6 |
HN6 |
181.4 |
180.3 |
| C4 |
C5 |
C8 |
O9 |
177.7 |
0.0 |
| C2 |
N6 |
C5 |
HN6 |
180.0 |
180.1 |
| C4 |
C5 |
N6 |
C8 |
182.4 |
180.2 |
| N6 |
C5 |
C8 |
O9 |
0.8 |
180.3 |
| C4 |
C5 |
C8 |
N6 |
177.0 |
179.7 |
| C8 |
C5 |
N6 |
HN6 |
359.1 |
0.1 |
| C12 |
C11 |
N10 |
H11 |
119.3 |
120.1 |
| C16 |
C11 |
N10 |
H11 |
239.3 |
239.8 |
| HN10 |
N10 |
C11 |
H11 |
225.2 |
215.1 |
| C12 |
C11 |
N10 |
HN10 |
344.5 |
335.1 |
| N10 |
C11 |
C12 |
H11 |
237.9 |
239.9 |
| C16 |
C11 |
C12 |
H11 |
120.8 |
120.0 |
| C16 |
C11 |
N10 |
HN10 |
104.5 |
94.9 |
| N10 |
C11 |
C16 |
H11 |
122.1 |
120.1 |
| C12 |
C11 |
C16 |
H11 |
240.7 |
240.1 |
| H11 |
C11 |
N10 |
HN10 |
225.2 |
215.1 |
| C13 |
C12 |
C11 |
H11 |
289.4 |
297.6 |
| H12 |
C12 |
C13 |
H12A |
120.0 |
120.1 |
| N14 |
C13 |
C12 |
H13 |
240.0 |
239.9 |
| N14 |
C13 |
C12 |
H13A |
120.0 |
120.0 |
| H13 |
C13 |
C12 |
H13A |
240.0 |
240.1 |
| H12 |
C12 |
C11 |
H11 |
49.4 |
57.6 |
| C13 |
C12 |
H12 |
H12A |
240.7 |
239.9 |
| H12 |
C12 |
C13 |
H13 |
307.1 |
300.9 |
| H12 |
C12 |
C13 |
H13A |
67.1 |
60.8 |
| H12A |
C12 |
C11 |
H11 |
169.4 |
177.7 |
| C13 |
C12 |
H12A |
H12 |
119.3 |
120.1 |
| H12A |
C12 |
C13 |
H13 |
187.1 |
180.8 |
| H12A |
C12 |
C13 |
H13A |
307.1 |
300.7 |
| N14 |
C13 |
C12 |
H12 |
187.1 |
180.8 |
| N14 |
C13 |
C12 |
H12A |
67.1 |
60.7 |
| C12 |
C13 |
N14 |
H13 |
120.0 |
120.1 |
| C12 |
C13 |
N14 |
H13A |
240.0 |
240.0 |
| H13 |
C13 |
N14 |
H13A |
120.0 |
119.9 |
| H13 |
C13 |
C12 |
H12 |
307.1 |
300.9 |
| H13 |
C13 |
C12 |
H12A |
187.1 |
180.8 |
| C12 |
C13 |
H13 |
H13A |
120.3 |
119.9 |
| N14 |
C13 |
H13 |
H13A |
239.7 |
240.1 |
| H13A |
C13 |
C12 |
H12 |
67.1 |
60.8 |
| H13A |
C13 |
C12 |
H12A |
307.1 |
300.7 |
| C12 |
C13 |
H13A |
H13 |
239.7 |
240.0 |
| N14 |
C13 |
H13A |
H13 |
120.3 |
120.0 |
| C17 |
N14 |
C13 |
H13 |
83.4 |
65.7 |
| C17 |
N14 |
C13 |
H13A |
323.4 |
305.8 |
| C17 |
N14 |
C15 |
H15 |
273.8 |
294.2 |
| C17 |
N14 |
C15 |
H15A |
33.8 |
54.2 |
| C15 |
N14 |
C13 |
H13 |
302.9 |
301.7 |
| C15 |
N14 |
C13 |
H13A |
182.9 |
181.8 |
| C16 |
C15 |
N14 |
H15 |
240.0 |
240.1 |
| C16 |
C15 |
N14 |
H15A |
120.0 |
120.1 |
| H15 |
C15 |
N14 |
H15A |
240.0 |
240.0 |
| C15 |
C16 |
C11 |
H11 |
65.7 |
62.4 |
| N14 |
C15 |
C16 |
H15 |
120.0 |
120.0 |
| N14 |
C15 |
C16 |
H15A |
240.0 |
239.9 |
| H15 |
C15 |
C16 |
H15A |
120.0 |
120.0 |
| N14 |
C15 |
H15 |
H15A |
121.4 |
120.0 |
| C16 |
C15 |
H15 |
H15A |
238.7 |
240.0 |
| N14 |
C15 |
H15A |
H15 |
238.6 |
240.0 |
| C16 |
C15 |
H15A |
H15 |
121.3 |
119.9 |
| H16 |
C16 |
C11 |
H11 |
185.7 |
182.3 |
| H16 |
C16 |
C15 |
H15 |
178.1 |
179.2 |
| H16 |
C16 |
C15 |
H15A |
58.1 |
59.2 |
| H16A |
C16 |
C11 |
H11 |
305.7 |
302.4 |
| H16A |
C16 |
C15 |
H15 |
58.1 |
59.0 |
| H16A |
C16 |
C15 |
H15A |
298.1 |
299.1 |
| CL1 |
C21 |
N22 |
C17 |
179.4 |
180.3 |
| N22 |
C17 |
C18 |
H18 |
178.8 |
180.2 |
| C19 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
| C17 |
C18 |
C19 |
H18 |
180.0 |
180.0 |
| CL1 |
C21 |
C20 |
C19 |
180.2 |
180.0 |
| C20 |
C19 |
C18 |
H18 |
180.8 |
180.0 |
| C20 |
C19 |
C24 |
O25 |
141.7 |
180.0 |
| C20 |
C19 |
C24 |
N26 |
321.5 |
359.9 |
| C24 |
C19 |
C18 |
H18 |
1.1 |
359.9 |
| O25 |
C24 |
C19 |
N26 |
180.1 |
180.0 |
| C19 |
C24 |
N26 |
HN26 |
180.1 |
360.0 |
| C19 |
C24 |
N26 |
HN2A |
0.1 |
180.0 |
| CL1 |
C21 |
C20 |
N22 |
180.0 |
180.2 |
| C21 |
C20 |
C19 |
C24 |
179.3 |
180.0 |
| H20 |
C20 |
C19 |
C24 |
359.3 |
0.1 |
| CL1 |
C21 |
N22 |
C20 |
180.0 |
179.8 |
| N22 |
C21 |
C20 |
H20 |
180.2 |
179.7 |
| C19 |
C24 |
O25 |
N26 |
179.9 |
180.0 |
| O25 |
C24 |
N26 |
HN26 |
360.0 |
179.9 |
| O25 |
C24 |
N26 |
HN2A |
180.0 |
0.0 |
| C19 |
C24 |
N26 |
O25 |
180.1 |
180.0 |
| HN26 |
N26 |
C24 |
HN2A |
180.0 |
179.9 |
| C24 |
N26 |
HN26 |
HN2A |
180.0 |
180.1 |
| C24 |
N26 |
HN2A |
HN26 |
180.0 |
179.9 |
| C2 |
N6 |
HN6 |
C5 |
180.0 |
179.9 |
| HN6 |
N6 |
C5 |
C8 |
359.1 |
0.1 |