PDB Chemical Component 07S
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 07S
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O58 |
C41 |
1.224 |
1.213 |
| C41 |
N44 |
1.382 |
1.348 |
| C41 |
C40 |
1.498 |
1.507 |
| C31 |
C30 |
1.518 |
1.530 |
| C31 |
N26 |
1.456 |
1.469 |
| C30 |
N29 |
1.496 |
1.469 |
| N44 |
C45 |
1.451 |
1.471 |
| N44 |
C49 |
1.452 |
1.471 |
| C45 |
C46 |
1.520 |
1.533 |
| N29 |
C40 |
1.483 |
1.469 |
| N29 |
C28 |
1.498 |
1.470 |
| C49 |
C48 |
1.521 |
1.528 |
| C27 |
N26 |
1.457 |
1.469 |
| C27 |
C28 |
1.518 |
1.530 |
| N26 |
C21 |
1.419 |
1.391 |
| C22 |
C21 |
1.388 |
1.391 |
| C22 |
C17 |
1.385 |
1.389 |
| C21 |
C20 |
1.381 |
1.397 |
| N16 |
C17 |
1.403 |
1.392 |
| N16 |
C13 |
1.361 |
1.385 |
| C46 |
O47 |
1.433 |
1.429 |
| N14 |
C13 |
1.319 |
1.299 |
| N14 |
C15 |
1.367 |
1.317 |
| O47 |
C48 |
1.434 |
1.431 |
| C17 |
N18 |
1.337 |
1.325 |
| C13 |
S12 |
1.730 |
1.709 |
| C20 |
C19 |
1.375 |
1.377 |
| C15 |
C11 |
1.379 |
1.348 |
| N18 |
C19 |
1.335 |
1.321 |
| S12 |
C11 |
1.719 |
1.762 |
| C11 |
C4 |
1.453 |
1.477 |
| C4 |
C5 |
1.381 |
1.396 |
| C4 |
C3 |
1.386 |
1.401 |
| C5 |
N6 |
1.341 |
1.317 |
| C3 |
C2 |
1.383 |
1.383 |
| N6 |
C1 |
1.343 |
1.319 |
| C2 |
C1 |
1.380 |
1.384 |
| C1 |
H1 |
1.080 |
1.080 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.080 |
| C5 |
H4 |
1.080 |
1.079 |
| C15 |
H5 |
1.080 |
1.080 |
| N16 |
H6 |
1.000 |
0.970 |
| C19 |
H7 |
1.081 |
1.080 |
| C20 |
H8 |
1.080 |
1.080 |
| C22 |
H9 |
1.080 |
1.080 |
| C27 |
H10 |
1.099 |
1.091 |
| C27 |
H11 |
1.100 |
1.090 |
| C28 |
H12 |
1.100 |
1.091 |
| C28 |
H13 |
1.100 |
1.089 |
| C30 |
H15 |
1.100 |
1.090 |
| C30 |
H16 |
1.100 |
1.091 |
| C31 |
H17 |
1.100 |
1.090 |
| C31 |
H18 |
1.100 |
1.090 |
| C40 |
H19 |
1.100 |
1.089 |
| C40 |
H20 |
1.100 |
1.090 |
| C45 |
H21 |
1.099 |
1.090 |
| C45 |
H22 |
1.100 |
1.090 |
| C46 |
H23 |
1.100 |
1.090 |
| C46 |
H24 |
1.099 |
1.089 |
| C48 |
H25 |
1.100 |
1.090 |
| C48 |
H26 |
1.101 |
1.089 |
| C49 |
H27 |
1.100 |
1.091 |
| C49 |
H28 |
1.100 |
1.090 |
Bond Angles for 07S
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C41 |
N44 |
C45 |
119.9 |
121.0 |
| C41 |
N44 |
C49 |
121.5 |
121.0 |
| C41 |
C40 |
H19 |
109.8 |
109.5 |
| C41 |
C40 |
H20 |
109.8 |
109.5 |
| C31 |
C30 |
H15 |
108.8 |
109.5 |
| C31 |
C30 |
H16 |
108.8 |
109.5 |
| C30 |
N29 |
C40 |
109.7 |
111.0 |
| C45 |
N44 |
C49 |
118.3 |
118.0 |
| N44 |
C45 |
C46 |
110.9 |
108.4 |
| N44 |
C45 |
H21 |
109.0 |
109.7 |
| N44 |
C45 |
H22 |
109.0 |
109.7 |
| N44 |
C49 |
C48 |
110.1 |
108.6 |
| N44 |
C49 |
H27 |
109.3 |
109.7 |
| N44 |
C49 |
H28 |
109.3 |
109.7 |
| C45 |
C46 |
O47 |
110.0 |
109.2 |
| C46 |
C45 |
H21 |
109.0 |
109.7 |
| C46 |
C45 |
H22 |
109.0 |
109.7 |
| C45 |
C46 |
H23 |
109.3 |
109.5 |
| C45 |
C46 |
H24 |
109.3 |
109.5 |
| N29 |
C40 |
H19 |
109.8 |
109.5 |
| N29 |
C40 |
H20 |
109.9 |
109.4 |
| N29 |
C28 |
H12 |
109.3 |
109.5 |
| N29 |
C28 |
H13 |
109.3 |
109.5 |
| C49 |
C48 |
H25 |
109.4 |
109.6 |
| C49 |
C48 |
H26 |
109.4 |
109.5 |
| C28 |
C27 |
H10 |
110.3 |
109.5 |
| C28 |
C27 |
H11 |
110.3 |
109.5 |
| C27 |
C28 |
H12 |
109.3 |
109.5 |
| C27 |
C28 |
H13 |
109.3 |
109.5 |
| C21 |
C20 |
H8 |
120.6 |
120.4 |
| N16 |
C17 |
N18 |
122.0 |
119.7 |
| C17 |
N16 |
H6 |
116.9 |
120.0 |
| C46 |
O47 |
C48 |
111.9 |
114.1 |
| O47 |
C46 |
H23 |
109.3 |
109.5 |
| O47 |
C46 |
H24 |
109.3 |
109.6 |
| N14 |
C15 |
H5 |
121.8 |
122.8 |
| O47 |
C48 |
H25 |
109.4 |
109.5 |
| O47 |
C48 |
H26 |
109.4 |
109.5 |
| C17 |
N18 |
C19 |
117.5 |
121.8 |
| C20 |
C19 |
H7 |
117.9 |
119.6 |
| N18 |
C19 |
H7 |
117.9 |
119.5 |
| C4 |
C5 |
N6 |
124.3 |
120.6 |
| C4 |
C5 |
H4 |
117.8 |
119.7 |
| C4 |
C3 |
H3 |
120.3 |
120.8 |
| N6 |
C5 |
H4 |
117.8 |
119.7 |
| C3 |
C2 |
H2 |
121.1 |
120.4 |
| N6 |
C1 |
H1 |
117.7 |
119.5 |
| C2 |
C1 |
H1 |
117.7 |
119.4 |
| H10 |
C27 |
H11 |
108.6 |
109.4 |
| H12 |
C28 |
H13 |
109.7 |
109.5 |
| H15 |
C30 |
H16 |
110.1 |
109.4 |
| H17 |
C31 |
H18 |
108.3 |
109.5 |
| H19 |
C40 |
H20 |
109.1 |
109.5 |
| H21 |
C45 |
H22 |
110.0 |
109.7 |
| H23 |
C46 |
H24 |
109.7 |
109.5 |
| H25 |
C48 |
H26 |
109.6 |
109.5 |
| H27 |
C49 |
H28 |
109.7 |
109.7 |
Torsion Angles for 07S
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O58 |
C41 |
C40 |
H19 |
173.3 |
240.0 |
| O58 |
C41 |
C40 |
H20 |
293.3 |
119.9 |
| N44 |
C41 |
C40 |
H19 |
352.6 |
60.0 |
| N44 |
C41 |
C40 |
H20 |
112.6 |
300.0 |
| C45 |
N44 |
C41 |
C49 |
173.1 |
180.3 |
| C41 |
N44 |
C45 |
C46 |
142.1 |
129.5 |
| C41 |
N44 |
C45 |
H21 |
262.1 |
249.1 |
| C41 |
N44 |
C45 |
H22 |
22.1 |
9.7 |
| C41 |
N44 |
C49 |
C48 |
218.8 |
230.5 |
| C41 |
N44 |
C49 |
H27 |
338.8 |
350.3 |
| C41 |
N44 |
C49 |
H28 |
98.8 |
110.8 |
| N29 |
C40 |
C41 |
H19 |
240.0 |
120.0 |
| N29 |
C40 |
C41 |
H20 |
120.0 |
240.0 |
| H19 |
C40 |
C41 |
H20 |
240.0 |
120.0 |
| C31 |
C30 |
N29 |
C40 |
185.1 |
176.8 |
| H15 |
C30 |
C31 |
H16 |
240.0 |
120.0 |
| C30 |
N29 |
C40 |
H19 |
123.8 |
53.8 |
| C30 |
N29 |
C40 |
H20 |
3.8 |
173.8 |
| C30 |
N29 |
C28 |
H12 |
166.6 |
299.4 |
| C30 |
N29 |
C28 |
H13 |
286.6 |
179.3 |
| C41 |
N44 |
C45 |
C49 |
186.7 |
179.7 |
| C45 |
N44 |
C49 |
C48 |
45.6 |
50.2 |
| C45 |
N44 |
C49 |
H27 |
165.6 |
170.0 |
| C45 |
N44 |
C49 |
H28 |
285.6 |
290.5 |
| N44 |
C45 |
C46 |
O47 |
50.0 |
52.3 |
| C46 |
C45 |
N44 |
H21 |
240.0 |
240.3 |
| C46 |
C45 |
N44 |
H22 |
120.0 |
119.8 |
| N44 |
C45 |
C46 |
H23 |
170.0 |
172.2 |
| N44 |
C45 |
C46 |
H24 |
290.0 |
292.3 |
| H21 |
C45 |
N44 |
H22 |
240.0 |
239.4 |
| C41 |
N44 |
C49 |
C45 |
173.2 |
180.3 |
| C49 |
N44 |
C45 |
C46 |
315.4 |
309.7 |
| C49 |
N44 |
C45 |
H21 |
75.4 |
69.4 |
| C49 |
N44 |
C45 |
H22 |
195.4 |
190.0 |
| N44 |
C49 |
C48 |
H25 |
67.7 |
187.9 |
| N44 |
C49 |
C48 |
H26 |
187.7 |
67.8 |
| H27 |
C49 |
N44 |
H28 |
240.0 |
239.5 |
| C46 |
C45 |
N44 |
C49 |
315.4 |
309.7 |
| N44 |
C45 |
C46 |
H21 |
120.0 |
119.7 |
| N44 |
C45 |
C46 |
H22 |
240.0 |
240.2 |
| C45 |
C46 |
O47 |
C48 |
298.2 |
297.4 |
| O47 |
C46 |
C45 |
H23 |
240.0 |
240.1 |
| O47 |
C46 |
C45 |
H24 |
120.0 |
120.0 |
| H21 |
C45 |
C46 |
H22 |
120.1 |
120.6 |
| H23 |
C46 |
C45 |
H24 |
240.0 |
239.9 |
| C41 |
C40 |
N29 |
H19 |
120.0 |
240.0 |
| C41 |
C40 |
N29 |
H20 |
240.0 |
120.0 |
| C40 |
N29 |
C28 |
H12 |
294.3 |
63.3 |
| C40 |
N29 |
C28 |
H13 |
54.4 |
303.2 |
| H19 |
C40 |
N29 |
H20 |
120.0 |
240.0 |
| N29 |
C28 |
C27 |
H10 |
189.9 |
181.7 |
| N29 |
C28 |
C27 |
H11 |
69.9 |
61.6 |
| C27 |
C28 |
N29 |
H12 |
240.0 |
119.9 |
| C27 |
C28 |
N29 |
H13 |
120.0 |
239.9 |
| H12 |
C28 |
N29 |
H13 |
240.0 |
120.1 |
| N44 |
C49 |
C48 |
H27 |
120.0 |
119.8 |
| N44 |
C49 |
C48 |
H28 |
240.0 |
240.2 |
| O47 |
C48 |
C49 |
H25 |
240.0 |
120.0 |
| O47 |
C48 |
C49 |
H26 |
120.0 |
240.1 |
| H25 |
C48 |
C49 |
H26 |
240.0 |
120.2 |
| N29 |
C28 |
C27 |
H12 |
120.0 |
240.1 |
| N29 |
C28 |
C27 |
H13 |
240.0 |
120.1 |
| H10 |
C27 |
C28 |
H11 |
120.0 |
120.0 |
| H12 |
C28 |
C27 |
H13 |
120.0 |
239.9 |
| N26 |
C21 |
C20 |
H8 |
358.5 |
359.9 |
| C22 |
C21 |
C20 |
H8 |
180.6 |
179.7 |
| C22 |
C17 |
N16 |
H6 |
358.6 |
5.2 |
| C21 |
C20 |
C19 |
H7 |
179.7 |
180.0 |
| N16 |
C17 |
N18 |
C19 |
179.6 |
180.0 |
| O47 |
C46 |
C45 |
H21 |
290.0 |
292.6 |
| O47 |
C46 |
C45 |
H22 |
170.0 |
172.1 |
| C45 |
C46 |
O47 |
H23 |
120.0 |
119.9 |
| C45 |
C46 |
O47 |
H24 |
240.0 |
240.1 |
| C46 |
O47 |
C48 |
H25 |
303.2 |
182.5 |
| C46 |
O47 |
C48 |
H26 |
183.2 |
302.6 |
| H23 |
C46 |
O47 |
H24 |
120.0 |
120.1 |
| N44 |
C49 |
C48 |
O47 |
307.7 |
307.9 |
| C49 |
C48 |
O47 |
H25 |
120.0 |
240.0 |
| C49 |
C48 |
O47 |
H26 |
240.0 |
119.9 |
| C48 |
O47 |
C46 |
H23 |
178.2 |
177.5 |
| C48 |
O47 |
C46 |
H24 |
58.2 |
57.3 |
| H25 |
C48 |
O47 |
H26 |
120.0 |
239.9 |
| N18 |
C17 |
N16 |
H6 |
179.2 |
185.6 |
| C17 |
N18 |
C19 |
H7 |
179.8 |
179.9 |
| N18 |
C19 |
C20 |
H7 |
180.0 |
179.9 |
| C20 |
C19 |
N18 |
H7 |
180.0 |
180.1 |
| C11 |
C4 |
C5 |
H4 |
3.6 |
0.3 |
| C11 |
C4 |
C3 |
H3 |
357.2 |
359.7 |
| C5 |
C4 |
C3 |
H3 |
181.1 |
180.1 |
| N6 |
C5 |
C4 |
H4 |
180.0 |
179.7 |
| C4 |
C3 |
C2 |
H2 |
178.5 |
180.0 |
| C4 |
C5 |
N6 |
H4 |
180.0 |
180.3 |
| C5 |
N6 |
C1 |
H1 |
179.8 |
179.7 |
| C3 |
C2 |
C1 |
H1 |
181.1 |
180.0 |
| C2 |
C1 |
N6 |
H1 |
180.0 |
179.7 |
| N6 |
C1 |
C2 |
H1 |
180.0 |
180.3 |
| H2 |
C2 |
C1 |
H1 |
1.1 |
359.9 |
| H3 |
C3 |
C2 |
H2 |
358.5 |
359.9 |
| C4 |
C5 |
H4 |
N6 |
180.0 |
179.7 |
| H6 |
N16 |
C17 |
N18 |
179.2 |
185.6 |
| H8 |
C20 |
C19 |
H7 |
359.7 |
0.1 |
| C28 |
C27 |
H10 |
H11 |
239.0 |
240.0 |
| H10 |
C27 |
C28 |
H12 |
69.9 |
301.5 |
| H10 |
C27 |
C28 |
H13 |
309.9 |
61.6 |
| C28 |
C27 |
H11 |
H10 |
121.0 |
120.0 |
| H11 |
C27 |
C28 |
H12 |
309.9 |
181.5 |
| H11 |
C27 |
C28 |
H13 |
189.9 |
301.6 |
| N29 |
C28 |
H12 |
H13 |
119.8 |
239.9 |
| H12 |
C28 |
C27 |
H10 |
69.9 |
301.5 |
| H12 |
C28 |
C27 |
H11 |
309.9 |
181.5 |
| C27 |
C28 |
H12 |
H13 |
240.2 |
120.1 |
| N29 |
C28 |
H13 |
H12 |
240.2 |
120.0 |
| H13 |
C28 |
C27 |
H10 |
309.9 |
61.6 |
| H13 |
C28 |
C27 |
H11 |
189.9 |
301.6 |
| C27 |
C28 |
H13 |
H12 |
119.8 |
240.0 |
| C31 |
C30 |
H15 |
H16 |
119.2 |
239.9 |
| H15 |
C30 |
N29 |
C40 |
65.1 |
296.8 |
| C31 |
C30 |
H16 |
H15 |
240.8 |
120.1 |
| H16 |
C30 |
N29 |
C40 |
305.1 |
56.8 |
| H17 |
C31 |
C30 |
H15 |
289.2 |
178.4 |
| H17 |
C31 |
C30 |
H16 |
49.2 |
58.4 |
| H18 |
C31 |
C30 |
H15 |
49.2 |
58.4 |
| H18 |
C31 |
C30 |
H16 |
169.2 |
298.4 |
| C41 |
C40 |
H19 |
H20 |
120.4 |
240.0 |
| N29 |
C40 |
H19 |
H20 |
239.5 |
120.0 |
| C41 |
C40 |
H20 |
H19 |
239.6 |
120.0 |
| N29 |
C40 |
H20 |
H19 |
120.5 |
240.0 |
| H21 |
C45 |
N44 |
C49 |
75.4 |
69.4 |
| N44 |
C45 |
H21 |
C46 |
238.8 |
241.1 |
| N44 |
C45 |
H21 |
H22 |
119.4 |
120.6 |
| H21 |
C45 |
C46 |
O47 |
290.0 |
292.6 |
| C46 |
C45 |
H21 |
H22 |
240.6 |
239.4 |
| H21 |
C45 |
C46 |
H23 |
50.0 |
52.6 |
| H21 |
C45 |
C46 |
H24 |
170.0 |
172.7 |
| H22 |
C45 |
N44 |
C49 |
195.4 |
190.0 |
| N44 |
C45 |
H22 |
C46 |
121.2 |
118.9 |
| N44 |
C45 |
H22 |
H21 |
240.6 |
239.5 |
| H22 |
C45 |
C46 |
O47 |
170.0 |
172.1 |
| C46 |
C45 |
H22 |
H21 |
119.4 |
120.5 |
| H22 |
C45 |
C46 |
H23 |
290.0 |
292.0 |
| H22 |
C45 |
C46 |
H24 |
50.0 |
52.1 |
| C45 |
C46 |
H23 |
O47 |
239.6 |
240.2 |
| H23 |
C46 |
C45 |
H21 |
50.0 |
52.6 |
| H23 |
C46 |
C45 |
H22 |
290.0 |
292.0 |
| C45 |
C46 |
H23 |
H24 |
119.8 |
120.1 |
| H23 |
C46 |
O47 |
C48 |
178.2 |
177.5 |
| O47 |
C46 |
H23 |
H24 |
240.2 |
239.9 |
| C45 |
C46 |
H24 |
O47 |
120.4 |
119.8 |
| H24 |
C46 |
C45 |
H21 |
170.0 |
172.7 |
| H24 |
C46 |
C45 |
H22 |
50.0 |
52.1 |
| C45 |
C46 |
H24 |
H23 |
240.2 |
239.9 |
| H24 |
C46 |
O47 |
C48 |
58.2 |
57.3 |
| O47 |
C46 |
H24 |
H23 |
119.8 |
120.1 |
| C49 |
C48 |
H25 |
H26 |
119.9 |
239.9 |
| O47 |
C48 |
H25 |
H26 |
240.1 |
120.1 |
| C49 |
C48 |
H26 |
H25 |
240.1 |
120.2 |
| O47 |
C48 |
H26 |
H25 |
119.9 |
239.9 |
| N44 |
C49 |
H27 |
C48 |
239.5 |
240.8 |
| N44 |
C49 |
H27 |
H28 |
119.8 |
120.5 |
| H27 |
C49 |
C48 |
H25 |
307.7 |
68.2 |
| H27 |
C49 |
C48 |
H26 |
67.7 |
308.0 |
| N44 |
C49 |
H28 |
C48 |
120.5 |
119.1 |
| N44 |
C49 |
H28 |
H27 |
240.2 |
239.5 |
| H28 |
C49 |
C48 |
H25 |
187.7 |
307.7 |
| H28 |
C49 |
C48 |
H26 |
307.7 |
187.6 |