Atom Nomenclature for 07J

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 07J

Atom Name (V3) Atom Name (V2)
O1 O1
C2 C2
N3 N3
C4 C4
C5 C5
CL1 CL1
C7 C7
O8 O8
C9 C9
C10 C10
C11 C11
O12 O12
C13 C13
C14 C14
CL2 CL2
N16 N16
C17 C17
C18 C18
C19 C19
C20 C20
N21 N21
C22 C22
N23 N23
N24 N24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
N31 N31
C32 C32
C33 C33
N34 N34
C35 C35
C36 C36
C37 C37
C38 C38
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32