PDB Chemical Component 079

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 079

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C29 C28 1.414 1.382
C29 C30 1.412 1.383
C28 C27 1.403 1.382
C30 C31 1.403 1.382
C27 C26 1.398 1.382
C31 C26 1.378 1.382
C26 C25 1.483 1.507
O5 C24 1.438 1.429
C25 C24 1.555 1.530
C24 C23 1.488 1.530
C23 N3 1.457 1.469
C23 C22 1.527 1.530
C22 C14 1.530 1.530
C22 O4 1.464 1.429
O3 C13 1.269 1.213
C14 C15 1.526 1.530
C14 N2 1.493 1.465
C17 C18 1.395 1.383
C17 C16 1.399 1.382
C12 C10 1.508 1.530
C13 N2 1.320 1.348
C13 C9 1.552 1.507
C15 C16 1.517 1.507
C18 C19 1.391 1.382
C16 C21 1.390 1.383
C10 C9 1.572 1.530
C10 C11 1.537 1.530
C9 N1 1.513 1.465
C19 C20 1.402 1.382
N1 C1 1.336 1.347
C21 C20 1.425 1.382
C8 C7 1.422 1.381
C8 C3 1.423 1.388
C7 C6 1.395 1.383
O2 C3 1.399 1.359
O2 C2 1.496 1.429
C3 C4 1.408 1.388
C1 O1 1.232 1.212
C1 C2 1.499 1.507
C6 C5 1.386 1.382
C4 C5 1.418 1.381
C27 H1 1.080 1.081
C28 H2 1.080 1.080
C29 H3 1.080 1.080
C30 H4 1.080 1.079
C31 H5 1.080 1.080
C25 H6 1.100 1.090
C25 H7 1.100 1.090
C24 H8 1.100 1.090
O5 H9 0.950 0.967
C23 H10 1.100 1.090
N3 H11 1.000 1.009
N3 H12 1.000 1.009
C22 H14 1.100 1.090
O4 H15 0.950 0.967
C14 H16 1.099 1.090
C15 H17 1.100 1.090
C15 H18 1.100 1.091
C17 H19 1.080 1.080
C18 H20 1.080 1.080
C19 H21 1.080 1.080
C20 H22 1.080 1.080
C21 H23 1.080 1.080
N2 H24 1.000 0.969
C9 H25 1.100 1.090
C10 H26 1.100 1.090
C12 H27 1.100 1.090
C12 H28 1.100 1.090
C12 H29 1.100 1.090
C11 H30 1.100 1.090
C11 H31 1.100 1.091
C11 H32 1.100 1.090
N1 H33 1.000 0.970
C2 H34 1.100 1.090
C2 H35 1.100 1.090
C4 H36 1.081 1.080
C5 H37 1.080 1.080
C6 H38 1.080 1.081
C7 H39 1.080 1.080
C8 H40 1.080 1.080

Bond Angles for 079

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C29 C28 H2 122.0 120.0
C29 C30 C31 119.7 120.0
C30 C29 H3 118.7 120.0
C29 C30 H4 120.1 120.0
C28 C27 C26 121.3 120.0
C28 C27 H1 119.4 120.0
C30 C31 C26 117.9 120.0
C31 C30 H4 120.2 120.0
C30 C31 H5 121.0 120.0
C27 C26 C31 122.5 120.0
C27 C26 C25 116.8 120.0
C26 C27 H1 119.3 120.0
C31 C26 C25 120.6 120.0
C26 C31 H5 121.0 120.0
C26 C25 C24 113.7 109.5
C26 C25 H6 108.0 109.4
C26 C25 H7 108.1 109.5
O5 C24 C23 107.8 109.5
O5 C24 H8 106.3 109.5
C25 C24 C23 109.4 109.5
C24 C25 H6 108.1 109.5
C24 C25 H7 108.1 109.5
C25 C24 H8 104.6 109.5
C24 C23 N3 103.8 109.5
C24 C23 C22 113.4 109.5
C23 C24 H8 113.0 109.5
C24 C23 H10 111.1 109.5
N3 C23 C22 110.8 109.5
N3 C23 H10 113.7 109.5
C23 N3 H11 109.5 111.0
C23 N3 H12 109.5 111.0
C23 C22 C14 107.2 109.5
C23 C22 O4 113.6 109.4
C22 C23 H10 104.2 109.5
C23 C22 H14 108.5 109.5
O4 C22 C14 110.2 109.5
C22 C14 C15 108.5 109.5
C22 C14 N2 111.0 109.5
C14 C22 H14 112.0 109.5
C22 C14 H16 109.7 109.5
O4 C22 H14 105.4 109.5
C22 O4 H15 109.5 114.0
O3 C13 N2 122.3 120.0
C15 C14 N2 111.1 109.5
C14 C15 C16 110.0 109.5
C15 C14 H16 109.7 109.4
C14 C15 H17 109.3 109.5
C14 C15 H18 109.3 109.4
C13 N2 C14 121.4 120.0
N2 C14 H16 107.0 109.5
C14 N2 H24 119.3 120.0
C17 C18 C19 118.4 120.0
C18 C17 H19 120.0 120.0
C17 C18 H20 120.8 120.0
C17 C16 C21 120.5 120.0
C12 C10 H26 114.1 109.5
C13 N2 H24 119.3 120.1
C13 C9 H25 109.9 109.5
C15 C16 C21 119.0 120.0
C16 C15 H17 109.3 109.5
C16 C15 H18 109.3 109.5
C18 C19 C20 124.1 120.0
C19 C18 H20 120.8 120.0
C18 C19 H21 118.0 120.0
C16 C21 C20 121.3 120.0
C16 C21 H23 119.4 120.0
C10 C9 H25 105.8 109.4
C11 C10 H26 110.0 109.4
C10 C11 H30 109.5 109.4
C10 C11 H31 109.4 109.4
C10 C11 H32 109.5 109.5
C9 N1 H33 120.6 119.9
C20 C19 H21 118.0 120.0
C19 C20 H22 122.1 119.9
C21 C20 H22 122.1 120.0
C8 C7 H39 120.7 120.0
C7 C6 H38 117.7 119.9
O2 C3 C4 117.9 120.1
O2 C2 H34 111.2 109.5
O2 C2 H35 111.2 109.5
C3 C4 C5 118.9 119.9
C3 C4 H36 120.5 120.0
O1 C1 C2 118.2 120.0
C1 C2 H34 111.2 109.5
C1 C2 H35 111.2 109.5
C6 C5 H37 121.2 120.0
C5 C4 H36 120.5 120.0
C4 C5 H37 121.2 119.9
H6 C25 H7 110.8 109.5
H11 N3 H12 109.5 111.0
H17 C15 H18 109.6 109.5
H27 C12 H28 109.4 109.5
H27 C12 H29 109.5 109.5
H28 C12 H29 109.5 109.5
H30 C11 H31 109.5 109.5
H30 C11 H32 109.5 109.5
H31 C11 H32 109.5 109.5
H34 C2 H35 107.7 109.4

Torsion Angles for 079

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C29 C28 C27 C26 1.3 0.0
C29 C28 C27 H1 181.3 179.7
C30 C29 C28 H2 179.5 180.0
C29 C30 C31 C26 0.2 0.0
C31 C30 C29 H4 180.0 180.0
C29 C30 C31 H5 180.2 180.0
C28 C27 C26 C31 358.6 360.0
C28 C27 C26 C25 178.4 179.7
C26 C27 C28 H1 180.0 180.3
C31 C30 C29 H3 179.8 180.0
C29 C30 C31 H4 180.0 180.0
C27 C26 C31 C30 0.6 360.0
C30 C31 C26 C25 180.8 180.3
C26 C31 C30 H5 180.0 180.0
C28 C27 C26 H1 180.0 179.7
C30 C31 C26 C27 0.6 360.0
C31 C26 C27 C25 180.2 180.3
C27 C26 C31 H5 180.7 180.0
C27 C26 C25 C24 89.3 90.0
C27 C26 C25 H6 209.3 210.0
C27 C26 C25 H7 329.3 330.0
C26 C31 C30 H4 180.2 180.0
C30 C31 C26 H5 180.0 180.0
C27 C26 C31 C25 179.8 179.7
C31 C26 C27 H1 178.6 180.3
C31 C26 C25 C24 269.1 269.7
C31 C26 C25 H6 29.1 29.7
C31 C26 C25 H7 149.1 149.7
C27 C26 C25 C31 180.2 180.3
C25 C26 C27 H1 358.4 0.0
C25 C26 C31 H5 0.9 0.3
C26 C25 C24 C23 107.1 185.0
C24 C25 C26 H6 240.0 240.0
C24 C25 C26 H7 120.0 120.0
C26 C25 C24 H8 228.4 304.9
H6 C25 C26 H7 240.0 240.0
C25 C24 O5 C23 122.9 120.0
O5 C24 C25 H6 225.0 305.0
O5 C24 C25 H7 105.0 185.0
C25 C24 O5 H8 244.4 240.0
O5 C24 C23 N3 159.6 180.0
O5 C24 C23 C22 279.9 300.0
C23 C24 O5 H8 121.5 120.0
O5 C24 C23 H10 37.0 60.0
C26 C25 C24 H6 120.0 120.0
C26 C25 C24 H7 240.0 240.0
O5 C24 C25 C23 237.9 240.0
O5 C24 C25 H8 116.5 120.0
C25 C24 C23 N3 32.8 60.0
C25 C24 C23 C22 153.2 180.0
C23 C24 C25 H8 238.6 240.0
C25 C24 C23 H10 270.2 300.0
H6 C25 C24 H7 120.0 120.0
O5 C24 C23 H8 242.9 240.0
C23 C24 C25 H6 347.1 65.0
C23 C24 C25 H7 227.1 305.0
C25 C24 C23 H8 116.1 120.0
N3 C23 C24 C22 239.7 240.0
N3 C23 C24 H10 122.6 120.0
C24 C23 N3 H11 180.0 66.3
C24 C23 N3 H12 300.0 190.3
C24 C23 C22 C14 154.9 181.3
C24 C23 C22 O4 276.9 301.3
C22 C23 C24 H10 243.0 240.0
C24 C23 C22 H14 33.7 61.3
C24 C23 N3 C22 122.1 120.0
N3 C23 C24 H8 276.8 300.0
C24 C23 N3 H10 239.1 240.0
N3 C23 C22 C14 271.2 301.3
N3 C23 C22 O4 33.1 61.3
C22 C23 N3 H10 117.0 120.0
N3 C23 C22 H14 150.0 181.3
H11 N3 C23 H12 240.0 236.0
C24 C23 C22 N3 243.7 240.0
C22 C23 C24 H8 37.1 60.0
C24 C23 C22 H10 121.0 120.0
N3 C23 C22 H10 237.3 240.0
C22 C23 N3 H11 57.9 306.3
C22 C23 N3 H12 177.9 70.3
O4 C22 C23 C14 122.0 120.0
C23 C22 C14 C15 196.6 294.6
C23 C22 C14 N2 74.3 174.6
C14 C22 C23 H14 121.1 120.0
C23 C22 C14 H16 316.3 54.6
O4 C22 C23 H14 243.1 240.0
C23 C22 O4 H15 180.0 300.0
C23 C22 C14 O4 124.1 120.0
C14 C22 C23 H10 33.9 61.3
C23 C22 C14 H14 241.1 240.0
O4 C22 C14 H14 117.0 120.0
C14 C22 O4 H15 300.3 60.0
C15 C14 C22 N2 122.3 120.0
C22 C14 C15 C16 176.8 175.0
C15 C14 C22 H16 240.3 240.1
C22 C14 C15 H17 296.8 295.0
C22 C14 C15 H18 56.8 55.0
C13 N2 C14 C22 241.7 224.7
N2 C14 C22 H16 118.0 120.1
C22 C14 N2 H24 61.7 44.7
C23 C22 O4 C14 239.7 240.0
O4 C22 C23 H10 155.9 181.3
C23 C22 O4 H14 118.6 120.0
O4 C22 C14 C15 72.5 174.6
O4 C22 C14 N2 310.2 54.6
C14 C22 O4 H14 238.9 240.0
O4 C22 C14 H16 192.2 294.6
O3 C13 N2 C14 357.7 4.1
O3 C13 N2 H24 177.7 184.1
O3 C13 C9 H25 171.8 212.8
C22 C14 C15 N2 237.7 240.0
C15 C14 C22 H14 315.4 54.6
C22 C14 C15 H16 119.7 120.0
C13 N2 C14 C15 121.0 104.7
N2 C14 C15 H16 242.0 240.0
C15 C14 N2 H24 300.9 284.7
C14 C15 C16 C21 106.4 90.0
C16 C15 C14 H17 240.0 240.0
C16 C15 C14 H18 120.0 120.0
H17 C15 C14 H18 240.0 240.0
C22 C14 N2 C15 120.8 120.0
N2 C14 C22 H14 193.1 294.6
C22 C14 N2 H16 240.4 240.0
N2 C14 C15 C16 299.1 295.0
C15 C14 N2 H16 119.6 120.0
N2 C14 C15 H17 59.1 55.0
N2 C14 C15 H18 179.0 175.0
C13 N2 C14 H24 180.0 180.0
C18 C17 C16 C21 2.1 0.2
C17 C18 C19 C20 2.1 359.9
C19 C18 C17 H20 180.0 180.1
C17 C18 C19 H21 182.1 179.9
C15 C16 C17 C21 179.0 179.8
C17 C16 C15 H17 167.4 150.2
C17 C16 C15 H18 47.4 30.2
C17 C16 C21 C20 0.5 359.6
C17 C16 C21 H23 180.5 179.7
C12 C10 C9 H25 291.3 304.6
C11 C10 C12 H26 120.2 240.0
C12 C10 C11 H30 180.0 300.0
C12 C10 C11 H31 300.0 60.0
C12 C10 C11 H32 60.0 180.0
C22 C14 N2 C13 241.7 224.7
C15 C14 N2 C13 121.0 104.7
C13 N2 C14 H16 1.3 344.7
C14 N2 C13 H24 180.0 180.0
N2 C13 C9 H25 338.7 32.8
C10 C9 C13 H25 243.3 240.0
C13 C9 N1 H33 56.9 25.0
C16 C15 C14 N2 299.1 295.0
C16 C15 C14 H16 57.1 55.0
C14 C15 C16 H17 120.0 120.1
C14 C15 C16 H18 240.0 240.0
C17 C16 C15 C21 181.0 180.2
C15 C16 C21 C20 181.5 179.8
C15 C16 C21 H23 1.5 360.0
H17 C15 C16 H18 120.0 120.0
C19 C18 C17 H19 176.6 180.0
C17 C18 C19 H20 180.0 179.9
C20 C19 C18 H21 180.0 180.0
C18 C19 C20 H22 180.4 180.0
C21 C16 C15 H17 346.4 330.0
C21 C16 C15 H18 226.4 210.0
C16 C21 C20 H22 178.3 180.2
C13 C9 C10 H25 119.2 120.0
C10 C9 N1 H33 292.7 265.0
C12 C10 C11 H26 237.1 120.0
C11 C10 C9 H25 48.2 184.5
H30 C11 C10 H31 240.0 240.0
H30 C11 C10 H32 120.0 120.0
H31 C11 C10 H32 240.0 240.0
C20 C19 C18 H20 182.1 180.0
C18 C19 C20 H21 180.0 180.0
C16 C21 C20 C19 358.3 0.4
C21 C20 C19 H22 180.0 179.8
N1 C1 C2 H34 232.9 300.3
N1 C1 C2 H35 112.9 60.3
C16 C21 C20 H23 180.0 180.2
C21 C20 C19 H21 180.4 179.9
C19 C20 C21 H22 180.0 180.2
C8 C7 C6 H38 179.1 179.7
C8 C3 C4 H36 178.1 180.3
C7 C6 C5 H37 180.4 180.0
C3 O2 C2 H34 319.2 60.0
C3 O2 C2 H35 79.2 300.1
O2 C3 C4 C5 176.8 180.0
O2 C3 C4 H36 356.7 359.9
C1 C2 O2 H34 240.0 120.0
C1 C2 O2 H35 120.0 240.0
H34 C2 O2 H35 240.0 120.0
C5 C4 C3 H36 180.0 180.1
C3 C4 C5 H37 181.0 180.0
O1 C1 C2 H34 63.8 120.0
O1 C1 C2 H35 303.8 240.0
O2 C2 C1 H34 120.0 240.0
O2 C2 C1 H35 240.0 120.0
H34 C2 C1 H35 120.0 240.0
C6 C5 C4 H36 181.1 180.0
C4 C5 C6 H37 180.0 180.1
C3 C4 C5 H36 180.0 179.9
C6 C5 C4 H37 180.0 179.9
C28 C27 H1 C26 180.0 180.3
H1 C27 C26 C31 178.6 180.3
H1 C27 C26 C25 358.4 0.0
H2 C28 C27 C26 181.3 180.0
H2 C28 C27 H1 1.3 359.7
H3 C29 C28 H2 359.5 360.0
H3 C29 C30 C31 179.8 180.0
H3 C29 C30 H4 359.8 360.0
C29 C30 H4 C31 180.0 180.0
H4 C30 C29 H3 359.8 360.0
H4 C30 C31 C26 180.2 180.0
H4 C30 C31 H5 0.1 0.0
C30 C31 H5 C26 180.0 180.0
H5 C31 C30 H4 0.1 0.0
H5 C31 C26 C25 0.9 0.3
C26 C25 H6 C24 236.5 240.0
C26 C25 H6 H7 118.2 120.0
H6 C25 C24 C23 347.1 65.0
C24 C25 H6 H7 241.7 240.0
H6 C25 C24 H8 108.5 185.0
C26 C25 H7 C24 123.5 120.0
C26 C25 H7 H6 241.8 240.0
H7 C25 C24 C23 227.1 305.0
C24 C25 H7 H6 118.3 120.0
H7 C25 C24 H8 348.4 65.0
O5 C24 H8 C23 118.1 120.0
C25 C24 H8 C23 241.1 240.0
H8 C24 C25 H6 108.5 185.0
H8 C24 C25 H7 348.4 65.0
H8 C24 C23 N3 276.8 300.0
H8 C24 C23 C22 37.1 60.0
H8 C24 C23 H10 154.1 180.0
H9 O5 C24 C23 57.1 300.0
H9 O5 C24 H8 295.6 180.0
C24 C23 H10 N3 116.7 120.0
C24 C23 H10 C22 237.5 240.0
H10 C23 C24 H8 154.1 180.0
N3 C23 H10 C22 120.8 120.0
H10 C23 N3 H11 300.9 186.3
H10 C23 N3 H12 60.9 310.3
H10 C23 C22 C14 33.9 61.3
H10 C23 C22 O4 155.9 181.3
H10 C23 C22 H14 272.7 301.3
H11 N3 C23 C22 57.9 306.3
H11 N3 C23 H10 300.9 186.3
C23 N3 H11 H12 120.0 124.0
H12 N3 C23 C22 177.9 70.3
H12 N3 C23 H10 60.9 310.3
C23 N3 H12 H11 240.0 236.0
C23 C22 H14 C14 118.1 120.0
C23 C22 H14 O4 238.0 240.0
H14 C22 C23 H10 272.7 301.3
O4 C22 H14 C14 240.1 240.0
H14 C22 C14 C15 315.4 54.6
H14 C22 C14 N2 193.1 294.6
H14 C22 C14 H16 75.2 174.6
H14 C22 O4 H15 61.3 180.0
H15 O4 C22 C14 300.3 60.0
H15 O4 C22 H14 61.3 180.0
C22 C14 H16 C15 241.0 240.0
C22 C14 H16 N2 120.5 120.0
H16 C14 C22 H14 75.2 174.6
C15 C14 H16 N2 239.5 240.0
H16 C14 C15 C16 57.1 55.0
H16 C14 C15 H17 177.1 175.0
H16 C14 C15 H18 297.0 295.0
H16 C14 N2 H24 181.3 164.7
H17 C15 C14 N2 59.1 55.0
C14 C15 H17 C16 239.6 240.0
H17 C15 C14 H16 177.1 175.0
C14 C15 H17 H18 119.8 120.0
H17 C15 C16 C21 346.4 330.0
C16 C15 H17 H18 240.2 240.0
H18 C15 C14 N2 179.0 175.0
C14 C15 H18 C16 120.4 120.0
H18 C15 C14 H16 297.0 295.0
C14 C15 H18 H17 240.2 240.0
H18 C15 C16 C21 226.4 210.0
C16 C15 H18 H17 119.8 120.0
H19 C17 C18 C19 176.6 180.0
H19 C17 C18 H20 356.6 359.9
H19 C17 C16 C21 182.1 180.2
C17 C18 H20 C19 180.0 180.1
H20 C18 C17 H19 356.6 359.9
H20 C18 C19 C20 182.1 180.0
H20 C18 C19 H21 2.1 360.0
C18 C19 H21 C20 180.0 180.0
H21 C19 C18 H20 2.1 360.0
H21 C19 C20 H22 0.4 0.0
H22 C20 C19 H21 0.4 0.0
C16 C21 H23 C20 180.0 179.8
H23 C21 C20 H22 358.3 0.1
C13 N2 H24 C14 180.0 180.0
H24 N2 C14 H16 181.3 164.7
H25 C9 N1 H33 176.2 145.0
H26 C10 C9 H25 168.4 64.6
H26 C10 C11 H30 302.9 180.0
H26 C10 C11 H31 62.9 300.0
H26 C10 C11 H32 182.9 60.0
H27 C12 C10 H26 297.1 298.7
H28 C12 H27 H29 120.0 120.0
H28 C12 C10 H26 57.1 58.7
H27 C12 H28 H29 240.0 240.0
H29 C12 C10 H26 177.1 178.7
H27 C12 H29 H28 120.0 120.0
H30 C11 C10 H26 302.9 180.0
C10 C11 H30 H31 120.0 120.0
C10 C11 H30 H32 240.0 239.9
H31 C11 H30 H32 120.0 120.0
H31 C11 C10 H26 62.9 300.0
C10 C11 H31 H30 240.0 240.0
C10 C11 H31 H32 120.0 120.0
H30 C11 H31 H32 240.0 240.0
H32 C11 C10 H26 182.9 60.0
C10 C11 H32 H30 120.0 120.0
C10 C11 H32 H31 240.0 240.0
H30 C11 H32 H31 120.0 120.0
O2 C2 H34 H35 122.0 240.0
C1 C2 H34 H35 238.0 120.0
O2 C2 H35 H34 238.0 120.0
C1 C2 H35 H34 122.0 240.0
C3 C4 H36 C5 180.0 180.1
H36 C4 C5 H37 1.1 0.1
H37 C5 C4 H36 1.1 0.1
H38 C6 C5 H37 0.4 359.9
H39 C7 C6 H38 359.0 360.0
H40 C8 C7 H39 0.1 359.7