PDB Chemical Component 06Z
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 06Z
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
F |
C18 |
1.350 |
1.351 |
N1 |
C2 |
1.378 |
1.312 |
N1 |
C14 |
1.301 |
1.302 |
C2 |
N3 |
1.324 |
1.386 |
C2 |
C4 |
1.416 |
1.383 |
C4 |
C5 |
1.469 |
1.407 |
C4 |
S13 |
1.751 |
1.761 |
C5 |
C6 |
1.515 |
1.479 |
C5 |
O12 |
1.256 |
1.220 |
C6 |
C7 |
1.465 |
1.396 |
C6 |
C11 |
1.446 |
1.396 |
C7 |
C8 |
1.433 |
1.379 |
C8 |
C9 |
1.440 |
1.384 |
C9 |
C10 |
1.448 |
1.383 |
C10 |
C11 |
1.446 |
1.380 |
S13 |
C14 |
1.760 |
1.709 |
C14 |
N15 |
1.378 |
1.377 |
N15 |
C16 |
1.424 |
1.398 |
C16 |
C17 |
1.456 |
1.389 |
C16 |
C21 |
1.473 |
1.389 |
C17 |
C18 |
1.461 |
1.383 |
C18 |
C19 |
1.443 |
1.385 |
C19 |
C20 |
1.456 |
1.383 |
C20 |
C21 |
1.455 |
1.381 |
N3 |
HN3 |
1.000 |
0.971 |
N3 |
HN3A |
1.000 |
0.970 |
C7 |
H7 |
1.080 |
1.080 |
C8 |
H8 |
1.080 |
1.080 |
C9 |
H9 |
1.080 |
1.080 |
C10 |
H10 |
1.080 |
1.080 |
C11 |
H11 |
1.080 |
1.079 |
N15 |
HN15 |
1.000 |
0.970 |
C17 |
H17 |
1.080 |
1.080 |
C19 |
H19 |
1.080 |
1.080 |
C20 |
H20 |
1.080 |
1.080 |
C21 |
H21 |
1.080 |
1.081 |
Bond Angles for 06Z
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
F |
C18 |
C17 |
117.8 |
120.0 |
F |
C18 |
C19 |
119.5 |
120.0 |
C2 |
N1 |
C14 |
110.4 |
117.3 |
N1 |
C2 |
N3 |
119.3 |
123.2 |
N1 |
C2 |
C4 |
117.2 |
113.6 |
N1 |
C14 |
S13 |
115.5 |
110.8 |
N1 |
C14 |
N15 |
119.6 |
124.6 |
N3 |
C2 |
C4 |
123.5 |
123.2 |
C2 |
N3 |
HN3 |
109.5 |
120.0 |
C2 |
N3 |
HN3A |
109.5 |
120.0 |
C2 |
C4 |
C5 |
125.6 |
126.2 |
C2 |
C4 |
S13 |
107.1 |
107.7 |
C5 |
C4 |
S13 |
127.3 |
126.2 |
C4 |
C5 |
C6 |
121.4 |
120.0 |
C4 |
C5 |
O12 |
120.7 |
120.0 |
C4 |
S13 |
C14 |
89.8 |
90.6 |
C6 |
C5 |
O12 |
117.9 |
120.0 |
C5 |
C6 |
C7 |
121.1 |
120.2 |
C5 |
C6 |
C11 |
119.9 |
120.1 |
C7 |
C6 |
C11 |
119.0 |
119.7 |
C6 |
C7 |
C8 |
121.2 |
119.9 |
C6 |
C7 |
H7 |
119.4 |
120.0 |
C6 |
C11 |
C10 |
119.8 |
119.8 |
C6 |
C11 |
H11 |
120.1 |
120.1 |
C7 |
C8 |
C9 |
119.4 |
120.1 |
C8 |
C7 |
H7 |
119.4 |
120.1 |
C7 |
C8 |
H8 |
120.3 |
119.9 |
C8 |
C9 |
C10 |
120.3 |
120.3 |
C9 |
C8 |
H8 |
120.3 |
120.0 |
C8 |
C9 |
H9 |
119.8 |
119.8 |
C9 |
C10 |
C11 |
120.4 |
120.2 |
C10 |
C9 |
H9 |
119.9 |
119.9 |
C9 |
C10 |
H10 |
119.8 |
119.9 |
C11 |
C10 |
H10 |
119.8 |
119.9 |
C10 |
C11 |
H11 |
120.1 |
120.1 |
S13 |
C14 |
N15 |
124.9 |
124.5 |
C14 |
N15 |
C16 |
134.0 |
119.9 |
C14 |
N15 |
HN15 |
113.0 |
120.1 |
N15 |
C16 |
C17 |
122.2 |
120.1 |
N15 |
C16 |
C21 |
118.7 |
120.1 |
C16 |
N15 |
HN15 |
113.0 |
120.0 |
C17 |
C16 |
C21 |
119.1 |
119.9 |
C16 |
C17 |
C18 |
118.8 |
119.9 |
C16 |
C17 |
H17 |
120.6 |
120.0 |
C16 |
C21 |
C20 |
120.7 |
120.0 |
C16 |
C21 |
H21 |
119.6 |
120.1 |
C17 |
C18 |
C19 |
122.7 |
120.0 |
C18 |
C17 |
H17 |
120.6 |
120.1 |
C18 |
C19 |
C20 |
118.3 |
120.1 |
C18 |
C19 |
H19 |
120.8 |
119.9 |
C19 |
C20 |
C21 |
120.3 |
120.1 |
C20 |
C19 |
H19 |
120.8 |
120.0 |
C19 |
C20 |
H20 |
119.9 |
119.9 |
C21 |
C20 |
H20 |
119.8 |
120.0 |
C20 |
C21 |
H21 |
119.6 |
119.9 |
HN3 |
N3 |
HN3A |
109.5 |
120.0 |
Torsion Angles for 06Z
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C16 |
C17 |
C18 |
F |
179.8 |
180.0 |
C17 |
C18 |
F |
C19 |
180.1 |
180.0 |
F |
C18 |
C17 |
H17 |
359.8 |
360.0 |
F |
C18 |
C19 |
C20 |
179.9 |
180.0 |
F |
C18 |
C19 |
H19 |
359.9 |
0.0 |
C2 |
N1 |
C14 |
S13 |
0.6 |
360.0 |
C2 |
N1 |
C14 |
N15 |
181.2 |
180.1 |
N3 |
C2 |
N1 |
C4 |
178.9 |
180.1 |
N1 |
C2 |
N3 |
HN3 |
0.0 |
359.9 |
N1 |
C2 |
N3 |
HN3A |
120.0 |
180.0 |
N1 |
C2 |
C4 |
C5 |
178.6 |
180.0 |
N1 |
C2 |
C4 |
S13 |
359.2 |
0.1 |
C14 |
N1 |
C2 |
N3 |
179.1 |
180.1 |
C14 |
N1 |
C2 |
C4 |
0.1 |
360.0 |
C4 |
S13 |
C14 |
N1 |
359.1 |
0.0 |
S13 |
C14 |
N1 |
N15 |
179.5 |
179.9 |
N1 |
C14 |
N15 |
C16 |
179.1 |
357.2 |
N1 |
C14 |
N15 |
HN15 |
359.1 |
177.1 |
N3 |
C2 |
N1 |
C14 |
179.1 |
180.1 |
N1 |
C2 |
N3 |
C4 |
181.1 |
179.9 |
N3 |
C2 |
C4 |
C5 |
359.7 |
359.9 |
N3 |
C2 |
C4 |
S13 |
180.3 |
180.0 |
HN3 |
N3 |
C2 |
HN3A |
240.0 |
180.0 |
C4 |
C2 |
N1 |
C14 |
0.1 |
360.0 |
N1 |
C2 |
C4 |
N3 |
178.9 |
180.1 |
C4 |
C2 |
N3 |
HN3 |
178.9 |
180.1 |
C4 |
C2 |
N3 |
HN3A |
298.9 |
0.1 |
C5 |
C4 |
C2 |
S13 |
179.4 |
179.9 |
C2 |
C4 |
C5 |
C6 |
182.6 |
187.7 |
C2 |
C4 |
C5 |
O12 |
0.8 |
7.8 |
C2 |
C4 |
S13 |
C14 |
0.9 |
359.9 |
C2 |
C4 |
C5 |
S13 |
180.7 |
180.1 |
C5 |
C4 |
S13 |
C14 |
181.5 |
180.0 |
C6 |
C5 |
C4 |
O12 |
181.8 |
180.0 |
C4 |
C5 |
C6 |
C7 |
48.6 |
206.9 |
C4 |
C5 |
C6 |
C11 |
227.6 |
26.6 |
N1 |
C14 |
S13 |
C4 |
359.1 |
0.0 |
C2 |
C4 |
S13 |
C5 |
179.4 |
179.9 |
S13 |
C4 |
C5 |
C6 |
1.9 |
7.6 |
S13 |
C4 |
C5 |
O12 |
180.1 |
187.7 |
C4 |
S13 |
C14 |
N15 |
178.5 |
180.0 |
C6 |
C5 |
C4 |
S13 |
1.9 |
7.6 |
C4 |
C5 |
C6 |
O12 |
178.2 |
180.0 |
C7 |
C6 |
C5 |
C11 |
180.9 |
180.3 |
C5 |
C6 |
C7 |
C8 |
179.3 |
180.0 |
C5 |
C6 |
C7 |
H7 |
359.4 |
360.0 |
C5 |
C6 |
C11 |
C10 |
180.7 |
179.7 |
C5 |
C6 |
C11 |
H11 |
0.7 |
0.0 |
O12 |
C5 |
C4 |
S13 |
180.1 |
187.7 |
C4 |
C5 |
O12 |
C6 |
181.8 |
180.0 |
O12 |
C5 |
C6 |
C7 |
230.3 |
26.9 |
O12 |
C5 |
C6 |
C11 |
49.4 |
206.6 |
C7 |
C6 |
C5 |
O12 |
230.3 |
26.9 |
C5 |
C6 |
C7 |
C11 |
179.1 |
179.7 |
C7 |
C6 |
C11 |
C10 |
359.8 |
359.4 |
C7 |
C6 |
C11 |
H11 |
179.8 |
179.7 |
C6 |
C7 |
C8 |
C9 |
359.8 |
0.1 |
C8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
C6 |
C7 |
C8 |
H8 |
179.8 |
180.0 |
C11 |
C6 |
C5 |
O12 |
49.4 |
206.6 |
C5 |
C6 |
C11 |
C7 |
180.9 |
180.3 |
C11 |
C6 |
C7 |
C8 |
0.3 |
0.2 |
C11 |
C6 |
C7 |
H7 |
180.3 |
180.3 |
C9 |
C10 |
C11 |
C6 |
0.1 |
0.6 |
C6 |
C11 |
C10 |
H10 |
180.1 |
180.3 |
C10 |
C11 |
C6 |
H11 |
180.0 |
179.7 |
C8 |
C7 |
C6 |
C11 |
0.3 |
0.2 |
C6 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
C7 |
C8 |
C9 |
C10 |
0.1 |
360.0 |
C9 |
C8 |
C7 |
H8 |
180.0 |
180.1 |
C7 |
C8 |
C9 |
H9 |
180.0 |
180.0 |
C9 |
C8 |
C7 |
H7 |
179.8 |
180.0 |
C7 |
C8 |
C9 |
H8 |
180.0 |
179.9 |
C8 |
C9 |
C10 |
C11 |
0.0 |
359.7 |
C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
C8 |
C9 |
C10 |
H10 |
180.0 |
180.0 |
C6 |
C11 |
C10 |
C9 |
0.1 |
0.6 |
C10 |
C9 |
C8 |
H8 |
180.1 |
180.0 |
C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
C11 |
C10 |
C9 |
H10 |
180.0 |
179.7 |
C9 |
C10 |
C11 |
H11 |
180.1 |
180.3 |
C6 |
C11 |
C10 |
H11 |
180.0 |
180.3 |
C11 |
C10 |
C9 |
H9 |
180.0 |
179.7 |
C9 |
C10 |
C11 |
H10 |
180.0 |
180.3 |
N1 |
C14 |
S13 |
N15 |
180.6 |
180.1 |
S13 |
C14 |
N15 |
C16 |
359.7 |
177.2 |
S13 |
C14 |
N15 |
HN15 |
179.6 |
357.2 |
N1 |
C14 |
N15 |
S13 |
179.4 |
179.9 |
C14 |
N15 |
C16 |
C17 |
157.8 |
149.1 |
C14 |
N15 |
C16 |
C21 |
337.6 |
328.8 |
C16 |
N15 |
C14 |
HN15 |
180.0 |
180.0 |
C14 |
N15 |
C16 |
HN15 |
180.0 |
180.0 |
C17 |
C16 |
N15 |
C21 |
180.2 |
180.3 |
N15 |
C16 |
C17 |
C18 |
180.1 |
180.0 |
N15 |
C16 |
C17 |
H17 |
0.1 |
360.0 |
N15 |
C16 |
C21 |
C20 |
179.8 |
179.8 |
N15 |
C16 |
C21 |
H21 |
359.8 |
360.0 |
F |
C18 |
C17 |
C16 |
179.8 |
180.0 |
N15 |
C16 |
C17 |
C21 |
179.8 |
179.7 |
C17 |
C16 |
N15 |
HN15 |
337.8 |
329.1 |
C17 |
C16 |
C21 |
C20 |
359.6 |
359.5 |
C17 |
C16 |
C21 |
H21 |
179.6 |
179.7 |
C16 |
C17 |
C18 |
C19 |
360.0 |
360.0 |
C18 |
C17 |
C16 |
H17 |
180.0 |
180.0 |
N15 |
C16 |
C21 |
C17 |
180.2 |
180.3 |
C21 |
C16 |
N15 |
HN15 |
157.6 |
148.8 |
C21 |
C16 |
C17 |
C18 |
0.3 |
0.3 |
C21 |
C16 |
C17 |
H17 |
180.4 |
180.2 |
C19 |
C20 |
C21 |
C16 |
0.1 |
0.5 |
C16 |
C21 |
C20 |
H20 |
180.2 |
180.3 |
C20 |
C21 |
C16 |
H21 |
180.0 |
179.8 |
F |
C18 |
C17 |
C19 |
179.9 |
180.0 |
C18 |
C17 |
C16 |
C21 |
0.3 |
0.3 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
C20 |
359.8 |
0.0 |
C17 |
C18 |
C19 |
H19 |
179.8 |
180.0 |
F |
C18 |
C19 |
C17 |
180.1 |
180.0 |
C19 |
C18 |
C17 |
H17 |
179.9 |
180.0 |
C18 |
C19 |
C20 |
C21 |
0.2 |
359.7 |
C20 |
C19 |
C18 |
H19 |
180.0 |
180.0 |
C18 |
C19 |
C20 |
H20 |
180.2 |
180.0 |
C16 |
C21 |
C20 |
C19 |
0.1 |
0.5 |
C18 |
C19 |
C20 |
H19 |
180.0 |
180.0 |
C21 |
C20 |
C19 |
H20 |
180.0 |
179.7 |
C19 |
C20 |
C21 |
H21 |
180.2 |
180.3 |
C16 |
C21 |
C20 |
H21 |
180.0 |
180.2 |
C21 |
C20 |
C19 |
H19 |
180.2 |
179.7 |
C19 |
C20 |
C21 |
H20 |
180.0 |
180.3 |
HN3 |
N3 |
C2 |
C4 |
178.9 |
180.1 |
C2 |
N3 |
HN3 |
HN3A |
120.0 |
180.0 |
HN3A |
N3 |
C2 |
C4 |
298.9 |
0.1 |
C2 |
N3 |
HN3A |
HN3 |
240.0 |
180.0 |
H7 |
C7 |
C6 |
C11 |
180.3 |
180.3 |
C6 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
H7 |
C7 |
C8 |
C9 |
179.8 |
180.0 |
H7 |
C7 |
C8 |
H8 |
359.8 |
360.0 |
C7 |
C8 |
H8 |
C9 |
180.0 |
180.1 |
H8 |
C8 |
C7 |
H7 |
359.8 |
360.0 |
H8 |
C8 |
C9 |
C10 |
180.1 |
180.0 |
H8 |
C8 |
C9 |
H9 |
0.0 |
0.1 |
C8 |
C9 |
H9 |
C10 |
180.0 |
180.0 |
H9 |
C9 |
C8 |
H8 |
0.0 |
0.1 |
H9 |
C9 |
C10 |
C11 |
180.0 |
179.7 |
H9 |
C9 |
C10 |
H10 |
0.0 |
359.9 |
C9 |
C10 |
H10 |
C11 |
180.0 |
179.7 |
H10 |
C10 |
C9 |
H9 |
0.0 |
359.9 |
H10 |
C10 |
C11 |
H11 |
0.1 |
0.0 |
C6 |
C11 |
H11 |
C10 |
180.0 |
179.7 |
H11 |
C11 |
C10 |
H10 |
0.1 |
0.0 |
C14 |
N15 |
HN15 |
C16 |
180.0 |
180.0 |
HN15 |
N15 |
C16 |
C17 |
337.8 |
329.1 |
HN15 |
N15 |
C16 |
C21 |
157.6 |
148.8 |
H17 |
C17 |
C16 |
C21 |
180.4 |
180.2 |
C16 |
C17 |
H17 |
C18 |
180.0 |
180.0 |
H17 |
C17 |
C18 |
C19 |
179.9 |
180.0 |
C18 |
C19 |
H19 |
C20 |
180.0 |
180.0 |
H19 |
C19 |
C20 |
C21 |
180.2 |
179.7 |
H19 |
C19 |
C20 |
H20 |
0.2 |
0.0 |
C19 |
C20 |
H20 |
C21 |
180.0 |
179.7 |
H20 |
C20 |
C19 |
H19 |
0.2 |
0.0 |
H20 |
C20 |
C21 |
H21 |
0.2 |
0.1 |
C16 |
C21 |
H21 |
C20 |
180.0 |
179.8 |
H21 |
C21 |
C20 |
H20 |
0.2 |
0.1 |