PDB Chemical Component 06Y

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 06Y

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C7 C8 1.389 1.381
C7 C6 1.402 1.382
C8 C3 1.404 1.388
C6 C5 1.407 1.383
C3 O2 1.373 1.359
C3 C4 1.406 1.386
O2 C2 1.484 1.428
C5 C4 1.420 1.382
C1 C2 1.528 1.507
C1 O1 1.234 1.208
C2 H30 1.100 1.090
C2 H31 1.100 1.090
C4 H32 1.081 1.080
C5 H33 1.080 1.081
C6 H34 1.080 1.081
C7 H35 1.081 1.080
C8 H36 1.081 1.080
C1 OXT   1.342
OXT HXT   0.968

Bond Angles for 06Y

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C8 C7 H35 119.9 120.0
C7 C8 H36 120.0 120.0
C7 C6 H34 119.9 120.0
C6 C5 H33 120.0 119.9
C3 C4 H32 120.6 120.1
O2 C2 H30 111.3 109.5
O2 C2 H31 111.3 109.5
C5 C4 H32 120.7 120.0
O1 C1 C2 114.4 120.0
C1 C2 H30 111.3 109.5
C1 C2 H31 111.4 109.5
C2 C1 OXT   120.0
O1 C1 OXT   120.0
H30 C2 H31 107.5 109.5
C1 OXT HXT   117.0

Torsion Angles for 06Y

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C8 C7 C6 H34 181.2 179.7
C7 C6 C5 H33 178.9 180.0
C8 C3 C4 H32 180.0 180.3
C6 C5 C4 H32 180.5 180.0
C3 O2 C2 H30 323.1 60.0
C3 O2 C2 H31 83.0 300.0
C5 C4 C3 H32 180.0 180.0
C1 C2 O2 H30 240.0 120.0
C1 C2 O2 H31 120.0 240.0
O2 C2 C1 OXT   180.2
H30 C2 O2 H31 240.1 120.0
C3 C4 C5 H32 180.0 180.0
O2 C2 C1 H30 120.0 239.9
O2 C2 C1 H31 240.0 120.0
O1 C1 C2 OXT   179.7
H30 C2 C1 H31 120.0 240.0
C2 C1 OXT HXT   180.0
O1 C1 C2 H30 61.2 120.0
O1 C1 C2 H31 301.2 240.0
C2 C1 O1 OXT   180.3
O1 C1 OXT HXT   0.3
O2 C2 H30 H31 122.2 240.0
C1 C2 H30 H31 237.8 120.0
H30 C2 C1 OXT   300.3
O2 C2 H31 H30 237.8 120.0
C1 C2 H31 H30 122.2 240.0
H31 C2 C1 OXT   60.3
H33 C5 C4 H32 0.5 0.0
H34 C6 C5 H33 358.9 0.0
H35 C7 C8 H36 359.3 359.4
H35 C7 C6 H34 1.2 0.3
H36 C8 C7 H35 359.3 359.4
O1 C1 OXT C2   180.3
OXT C1 C2 H30   300.3
OXT C1 C2 H31   60.3