PDB Chemical Component 06J

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 06J

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.492	1.508
C25	C3	1.523	1.505
C25	C24	1.546	1.527
C13	C14	1.401	1.365
C13	C12	1.390	1.394
C2	C3	1.398	1.349
C2	C5	1.423	1.453
C3	N1	1.408	1.373
C14	C15	1.410	1.401
C5	C6	1.458	1.462
C5	C4	1.378	1.393
O1	C6	1.228	1.217
N1	C4	1.387	1.339
N1	C12	1.420	1.395
C6	C7	1.525	1.513
N4	C26	1.376	1.348
C4	C9	1.498	1.507
C12	C17	1.388	1.385
C7	C8	1.550	1.526
C24	C23	1.543	1.527
C9	C8	1.551	1.533
C15	C26	1.488	1.473
C15	C16	1.403	1.401
C26	O2	1.228	1.216
C17	C16	1.398	1.389
C8	C11	1.544	1.532
C8	C10	1.540	1.530
C22	N3	1.520	1.498
C22	C21	1.519	1.529
C16	N2	1.392	1.393
C23	N3	1.534	1.506
N3	C19	1.536	1.497
C21	C20	1.521	1.537
N2	C18	1.459	1.470
C20	C19	1.533	1.526
C19	C18	1.538	1.528
C1	H1	1.100	1.090
C1	H2	1.100	1.090
C1	H3	1.100	1.090
C7	H4	1.100	1.093
C7	H5	1.100	1.091
C9	H6	1.099	1.093
C9	H7	1.100	1.086
C10	H8	1.100	1.089
C10	H9	1.100	1.090
C10	H10	1.100	1.090
C11	H11	1.100	1.090
C11	H12	1.100	1.090
C11	H13	1.100	1.090
C13	H14	1.080	1.079
C14	H15	1.080	1.081
C17	H16	1.080	1.080
N2	H17	1.000	0.970
C18	H18	1.101	1.092
C18	H19	1.100	1.088
C19	H20	1.101	1.085
C20	H21	1.100	1.090
C20	H22	1.100	1.089
C21	H23	1.101	1.090
C21	H24	1.100	1.089
C22	H25	1.100	1.086
C22	H26	1.100	1.085
C23	H28	1.100	1.082
C23	H29	1.101	1.086
C24	H30	1.100	1.092
C24	H31	1.100	1.088
C25	H32	1.100	1.092
C25	H33	1.100	1.092
N4	H34	1.000	0.970
N4	H35	1.000	0.970

Bond Angles for 06J

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	C3	127.5	127.0
C1	C2	C5	125.0	126.9
C2	C1	H1	109.5	109.5
C2	C1	H2	109.5	109.5
C2	C1	H3	109.5	109.5
C25	C24	H30	107.4	109.4
C25	C24	H31	107.4	110.3
C13	C14	C15	120.8	120.6
C14	C13	H14	120.4	119.4
C13	C14	H15	119.6	119.8
C13	C12	C17	119.0	119.4
C3	C2	C5	107.4	106.1
C2	C3	N1	107.4	109.4
C2	C5	C6	131.1	131.4
C2	C5	C4	108.0	106.5
C3	N1	C4	108.5	110.1
C3	N1	C12	125.8	124.6
C14	C15	C26	119.5	119.4
C14	C15	C16	120.5	119.4
C15	C14	H15	119.6	119.5
C5	C6	C7	117.5	117.9
C5	C4	C9	124.7	120.8
O1	C6	C7	120.4	120.7
C4	N1	C12	125.7	125.3
N1	C4	C9	126.6	131.2
N1	C12	C17	117.5	119.8
C6	C7	C8	114.5	111.2
C6	C7	H4	107.8	109.1
C6	C7	H5	107.8	109.3
C4	C9	C8	110.8	108.8
C4	C9	H6	109.0	109.3
C4	C9	H7	109.1	110.7
C12	C17	C16	123.7	121.0
C12	C17	H16	118.1	119.6
C7	C8	C11	110.9	108.8
C7	C8	C10	108.9	109.6
C8	C7	H4	107.9	109.1
C8	C7	H5	107.8	109.3
C24	C23	H28	107.1	110.7
C24	C23	H29	107.2	110.1
C9	C8	C11	109.9	108.8
C9	C8	C10	109.2	109.5
C16	C15	C26	119.8	121.2
C15	C26	O2	120.1	120.0
C15	C16	N2	123.4	122.1
C17	C16	N2	119.9	118.7
C10	C8	C11	107.6	108.7
C8	C11	H11	109.5	109.4
C8	C11	H12	109.5	109.5
C8	C11	H13	109.5	109.5
C8	C10	H8	109.5	109.4
C8	C10	H9	109.5	109.4
C8	C10	H10	109.5	109.5
N3	C22	H25	111.1	108.2
N3	C22	H26	111.1	108.2
C22	C21	H23	110.5	110.7
C22	C21	H24	110.5	110.8
C16	N2	C18	122.4	118.5
C16	N2	H17	105.4	122.0
N3	C19	H20	113.4	108.7
C21	C20	H21	110.7	110.1
C21	C20	H22	110.7	110.0
C18	N2	H17	105.4	119.5
N2	C18	H18	109.1	109.0
N2	C18	H19	109.1	109.5
C20	C19	H20	112.2	110.8
C19	C18	H18	109.1	109.1
C19	C18	H19	109.1	109.7
H1	C1	H2	109.4	109.4
H1	C1	H3	109.5	109.5
H2	C1	H3	109.5	109.5
H4	C7	H5	111.0	108.8
H6	C9	H7	109.9	109.2
H8	C10	H9	109.5	109.5
H8	C10	H10	109.5	109.5
H9	C10	H10	109.5	109.4
H11	C11	H12	109.5	109.5
H11	C11	H13	109.4	109.5
H12	C11	H13	109.5	109.5
H18	C18	H19	109.8	108.8
H21	C20	H22	108.2	110.1
H23	C21	H24	108.4	110.6
H25	C22	H26	107.8	110.9
H28	C23	H29	111.7	111.1
H30	C24	H31	111.5	108.9
H32	C25	H33	112.1	108.2
H34	N4	H35	120.0	120.0

Torsion Angles for 06J

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C1	C5	177.4	181.0
C1	C2	C3	N1	181.0	180.6
C1	C2	C5	C6	359.4	358.7
C1	C2	C5	C4	179.0	179.1
H1	C1	C2	H2	240.0	240.1
H1	C1	C2	H3	120.0	120.0
H2	C1	C2	H3	240.0	239.9
C25	C24	C23	H28	198.2	1.3
C25	C24	C23	H29	318.2	238.1
H30	C24	C25	H31	240.0	119.8
C14	C13	C12	C17	3.6	358.4
C13	C14	C15	C26	184.2	180.0
C13	C14	C15	C16	359.1	359.9
C15	C14	C13	H15	180.0	180.0
N1	C12	C13	C17	181.8	181.9
C13	C12	C17	C16	354.0	0.7
C13	C12	C17	H16	174.0	180.0
C1	C2	C3	C5	182.3	179.2
C3	C2	C1	H1	88.6	90.0
C3	C2	C1	H2	208.6	209.9
C3	C2	C1	H3	328.6	330.0
C3	C2	C5	C6	181.6	177.9
C3	C2	C5	C4	1.2	358.3
C2	C3	N1	C4	0.9	359.4
C2	C3	N1	C12	182.0	177.6
C1	C2	C5	C3	177.8	180.8
C5	C2	C1	H1	271.3	269.1
C5	C2	C1	H2	31.3	29.0
C5	C2	C1	H3	151.3	149.0
C5	C2	C3	N1	358.7	1.4
C2	C5	C6	C7	180.6	181.3
C2	C5	C4	C9	179.6	182.2
N1	C3	C2	C5	358.7	1.4
C4	N1	C3	C12	178.9	181.8
C3	N1	C4	C9	179.6	178.5
C3	N1	C12	C17	59.6	324.9
C15	C14	C13	H14	179.7	182.8
C13	C14	C15	H15	180.0	180.0
C16	C15	C14	C26	174.9	179.9
C14	C15	C26	O2	193.3	180.0
C14	C15	C16	N2	180.8	178.6
C2	C5	C6	C4	179.6	180.4
C6	C5	C4	C9	359.2	2.6
O1	C6	C5	C7	170.7	180.0
C5	C6	C7	C8	25.4	25.6
C5	C6	C7	H4	145.4	146.0
C5	C6	C7	H5	265.4	264.8
C2	C5	C4	C6	180.3	179.7
C5	C4	N1	C12	178.8	181.3
N1	C4	C5	C9	179.8	179.1
C5	C4	C9	C8	334.8	328.5
C5	C4	C9	H6	94.8	87.7
C5	C4	C9	H7	214.8	208.0
C5	C6	O1	C7	189.6	180.0
O1	C6	C7	C8	214.6	205.6
O1	C6	C7	H4	334.6	326.0
O1	C6	C7	H5	94.6	84.8
C2	C5	C4	N1	359.3	1.4
C3	N1	C4	C12	181.1	178.1
C5	C4	N1	C9	180.2	181.0
C4	N1	C12	C17	240.8	142.7
N1	C4	C9	C8	155.1	149.6
N1	C4	C9	H6	275.1	268.8
N1	C4	C9	H7	35.1	29.1
C13	C12	N1	C17	178.3	178.0
C3	N1	C12	C4	178.7	182.1
C12	N1	C4	C9	358.5	0.3
N1	C12	C17	C16	172.3	178.7
N1	C12	C17	H16	352.3	358.0
C6	C7	C8	C11	187.7	184.5
C6	C7	C8	C10	69.6	65.8
C8	C7	C6	H4	240.0	239.6
C8	C7	C6	H5	120.0	120.8
H4	C7	C6	H5	240.0	241.2
C9	C4	N1	C12	358.5	0.3
C4	C9	C8	C11	171.2	177.6
C4	C9	C8	C10	289.0	296.3
H6	C9	C4	H7	240.0	239.7
C12	C17	C16	N2	182.8	181.1
C6	C7	C8	H4	120.0	120.4
C6	C7	C8	H5	240.0	239.2
C4	C9	C8	C7	48.7	57.7
C9	C8	C7	C11	122.0	119.9
C9	C8	C7	C10	240.2	238.7
C10	C8	C7	C11	241.9	241.2
C7	C8	C11	H11	180.0	60.0
C7	C8	C11	H12	300.0	180.0
C7	C8	C11	H13	60.0	300.0
C7	C8	C10	H8	180.0	60.1
C7	C8	C10	H9	300.0	180.1
C7	C8	C10	H10	60.0	300.0
H4	C7	C8	H5	120.0	118.8
H28	C23	C24	H29	240.0	123.2
C4	C9	C8	H6	120.0	119.2
C4	C9	C8	H7	240.0	238.8
C7	C8	C9	C11	237.4	240.1
C7	C8	C9	C10	119.7	121.4
C9	C8	C7	H4	189.7	184.0
C9	C8	C7	H5	69.7	65.2
C10	C8	C9	C11	117.8	118.7
C9	C8	C11	H11	57.7	298.5
C9	C8	C11	H12	177.7	58.5
C9	C8	C11	H13	297.7	178.6
C9	C8	C10	H8	300.6	182.5
C9	C8	C10	H9	60.6	302.5
C9	C8	C10	H10	180.6	62.4
C14	C15	C26	C16	174.9	179.9
C26	C15	C14	H15	4.2	360.0
C26	C15	C16	N2	355.7	358.5
C14	C15	C16	C26	185.1	180.1
C16	C15	C14	H15	179.1	179.9
C12	C17	C16	C15	4.7	0.5
C16	C15	C26	O2	18.3	0.1
C17	C16	C15	N2	178.0	180.6
C15	C16	N2	C18	199.1	174.4
C15	C16	N2	H17	319.1	353.9
C12	C17	C16	H16	180.0	179.3
C17	C16	C15	C26	173.7	179.1
C15	C16	C17	N2	181.9	179.4
C17	C16	N2	C18	21.1	353.8
C17	C16	N2	H17	141.2	173.3
C7	C8	C11	C10	241.1	240.7
C11	C8	C7	H4	67.7	64.1
C11	C8	C7	H5	307.7	305.3
C9	C8	C11	C10	118.8	119.2
C11	C8	C10	H8	59.8	301.2
C11	C8	C10	H9	179.8	61.2
C11	C8	C10	H10	299.8	181.1
H11	C11	C8	H12	240.0	240.0
H11	C11	C8	H13	120.0	120.0
H12	C11	C8	H13	240.0	240.0
C7	C8	C10	C11	120.2	118.8
C10	C8	C7	H4	309.6	305.4
C10	C8	C7	H5	189.6	186.5
C9	C8	C10	C11	240.8	241.2
C10	C8	C11	H11	298.9	179.3
C10	C8	C11	H12	59.0	299.3
C10	C8	C11	H13	179.0	59.3
H8	C10	C8	H9	240.0	240.0
H8	C10	C8	H10	120.0	120.1
H9	C10	C8	H10	240.0	240.1
N3	C22	C21	H23	97.4	213.8
N3	C22	C21	H24	217.3	90.7
C22	N3	C19	H20	80.2	117.1
H25	C22	N3	H26	240.0	120.3
C22	C21	C20	H21	116.5	265.5
C22	C21	C20	H22	236.5	144.0
H23	C21	C22	H24	240.0	123.1
N2	C16	C15	C26	355.7	358.5
C18	N2	C16	H17	240.0	180.5
C16	N2	C18	H18	18.1	202.0
C16	N2	C18	H19	138.1	320.9
C23	N3	C22	H25	284.0	10.0
C23	N3	C22	H26	44.0	249.7
C23	N3	C19	H20	317.6	8.3
C20	C19	N3	H20	238.3	239.1
N3	C19	C18	H18	302.5	78.2
N3	C19	C18	H19	182.5	319.0
C21	C20	C19	H20	265.4	226.9
H21	C20	C21	H22	240.0	121.5
C16	N2	C18	H17	120.0	179.5
C19	C18	N2	H18	240.0	240.0
C19	C18	N2	H19	120.0	121.0
H18	C18	N2	H19	240.0	241.0
N3	C19	C20	H20	122.5	119.6
C20	C19	C18	H18	186.8	319.5
C20	C19	C18	H19	66.8	200.3
C19	C18	N2	H17	138.1	262.4
N2	C18	C19	H18	120.0	119.9
N2	C18	C19	H19	240.0	239.0
H18	C18	C19	H19	120.0	119.1
H1	C1	C2	C3	88.6	90.0
H1	C1	C2	C5	271.3	269.1
C2	C1	H1	H2	120.0	120.0
C2	C1	H1	H3	240.0	240.0
H2	C1	H1	H3	120.0	120.0
H2	C1	C2	C3	208.6	209.9
H2	C1	C2	C5	31.3	29.0
C2	C1	H2	H1	240.0	240.1
C2	C1	H2	H3	120.0	120.0
H1	C1	H2	H3	240.0	240.0
H3	C1	C2	C3	328.6	330.0
H3	C1	C2	C5	151.3	149.0
C2	C1	H3	H1	120.0	120.0
C2	C1	H3	H2	240.0	240.0
H1	C1	H3	H2	120.0	120.0
C6	C7	H4	C8	235.9	238.3
C6	C7	H4	H5	117.9	119.1
H4	C7	C8	C11	67.7	64.1
H4	C7	C8	C10	309.6	305.4
C8	C7	H4	H5	242.1	240.8
C6	C7	H5	C8	124.1	121.9
C6	C7	H5	H4	242.1	241.0
H5	C7	C8	C11	307.7	305.3
H5	C7	C8	C10	189.6	186.5
C8	C7	H5	H4	117.9	119.0
C4	C9	H6	C8	238.9	241.2
C4	C9	H6	H7	119.5	121.2
H6	C9	C8	C11	51.2	58.5
H6	C9	C8	C10	169.0	177.2
C4	C9	H7	C8	121.1	120.0
C4	C9	H7	H6	240.5	239.7
H7	C9	C8	C11	291.2	298.8
H7	C9	C8	C10	49.0	57.5
H8	C10	C8	C11	59.8	301.2
C8	C10	H8	H9	120.0	119.9
C8	C10	H8	H10	240.0	239.9
H9	C10	H8	H10	120.0	120.0
H9	C10	C8	C11	179.8	61.2
C8	C10	H9	H8	240.0	240.0
C8	C10	H9	H10	120.0	120.0
H8	C10	H9	H10	240.0	239.9
H10	C10	C8	C11	299.8	181.1
C8	C10	H10	H8	120.0	120.0
C8	C10	H10	H9	240.0	240.1
H8	C10	H10	H9	120.0	120.1
C8	C11	H11	H12	120.0	120.0
C8	C11	H11	H13	240.0	240.0
H12	C11	H11	H13	120.0	120.0
C8	C11	H12	H11	240.0	240.0
C8	C11	H12	H13	120.0	120.1
H11	C11	H12	H13	240.0	240.0
C8	C11	H13	H11	120.0	120.0
C8	C11	H13	H12	240.0	240.0
H11	C11	H13	H12	120.0	120.0
H14	C13	C14	C15	179.7	182.8
H14	C13	C14	H15	359.7	2.8
H14	C13	C12	C17	183.6	176.9
C13	C14	H15	C15	180.0	180.0
H15	C14	C13	H14	359.7	2.8
H15	C14	C15	C26	4.2	360.0
H15	C14	C15	C16	179.1	179.9
C12	C17	H16	C16	180.0	180.7
H16	C17	C16	N2	2.9	1.8
C16	N2	H17	C18	229.3	180.5
H17	N2	C18	H18	258.1	22.4
H17	N2	C18	H19	18.1	141.4
H18	C18	N2	H17	258.1	22.4
N2	C18	H18	H19	119.6	119.4
C19	C18	H18	H19	240.5	240.3
H19	C18	N2	H17	18.1	141.4
N2	C18	H19	H18	240.5	241.0
C19	C18	H19	H18	119.6	119.3
H20	C19	C18	H18	65.1	197.0
H20	C19	C18	H19	305.1	77.8
C21	C20	H21	H22	121.5	238.5
H21	C20	C19	H20	145.4	345.9
C21	C20	H22	H21	238.5	121.5
H22	C20	C19	H20	25.5	108.0
C22	C21	H23	H24	121.2	236.7
H23	C21	C20	H21	356.5	24.1
H23	C21	C20	H22	116.5	262.6
C22	C21	H24	H23	238.8	123.2
H24	C21	C20	H21	236.5	146.7
H24	C21	C20	H22	356.5	25.2
N3	C22	H25	H26	121.9	241.4
H25	C22	C21	H23	337.4	332.0
H25	C22	C21	H24	97.3	208.9
N3	C22	H26	H25	238.1	118.6
H26	C22	C21	H23	217.4	95.4
H26	C22	C21	H24	337.3	332.3
C24	C23	H28	H29	117.1	237.3
C24	C23	H29	H28	242.9	123.0
C25	C24	H30	H31	117.4	239.4
H30	C24	C23	H28	78.2	120.8
H30	C24	C23	H29	198.2	357.6
C25	C24	H31	H30	242.6	120.1
H31	C24	C23	H28	318.2	240.2
H31	C24	C23	H29	78.2	117.0
H32	C25	C24	H30	72.1	306.4
H32	C25	C24	H31	192.1	186.7
H33	C25	C24	H30	312.1	188.2
H33	C25	C24	H31	72.1	68.5