Atom Nomenclature for 064

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 064

Atom Name (V3) Atom Name (V2)
C1 C1
N4 N4
C5 C5
C6 C6
C7 C7
C8 C8
C10 C10
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C32 C32
C2 C2
C3 C3
O9 O9
O11 O11
C12 C12
CL13 CL13
C14 C14
CL15 CL15
CL25 CL25
C31 C31
C33 C33
C34 C34
O35 O35
O36 O36
H6 H6
H6A H6A
H10 H10
H16 H16
H16A H16A
H16B H16B
H17 H17
H17A H17A
H17B H17B
H19 H19
H20 H20
H21 H21
H23 H23
H26 H26
H27 H27
H29 H29
H30 H30
H32 H32
H12 H12
H14 H14
H33 H33
HO36 HO36