PDB Chemical Component 054
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 054
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
C2 |
1.404 |
1.389 |
C1 |
C15 |
1.495 |
1.507 |
C2 |
C3 |
1.389 |
1.376 |
C2 |
H2 |
1.080 |
1.080 |
C3 |
H3 |
1.080 |
1.080 |
C4 |
C1 |
1.413 |
1.366 |
C4 |
C5 |
1.406 |
1.397 |
C4 |
H4 |
1.080 |
1.080 |
C5 |
C6 |
1.406 |
1.407 |
C6 |
C3 |
1.405 |
1.393 |
N7 |
C6 |
1.364 |
1.375 |
N7 |
C8 |
1.374 |
1.386 |
C8 |
C9 |
1.392 |
1.379 |
C9 |
C5 |
1.420 |
1.464 |
C9 |
N21 |
1.402 |
1.394 |
C10 |
C8 |
1.466 |
1.462 |
O11 |
C10 |
1.216 |
1.217 |
O12 |
C10 |
1.347 |
1.349 |
O12 |
HO12 |
0.950 |
0.966 |
C13 |
N7 |
1.446 |
1.465 |
C13 |
H13 |
1.100 |
1.091 |
C13 |
H13A |
1.100 |
1.090 |
C14 |
C13 |
1.497 |
1.507 |
C14 |
C20 |
1.402 |
1.384 |
C15 |
F32 |
1.353 |
1.398 |
C15 |
F33 |
1.349 |
1.399 |
C15 |
F34 |
1.346 |
1.399 |
C16 |
C14 |
1.394 |
1.388 |
C16 |
H16 |
1.080 |
1.080 |
C17 |
C16 |
1.379 |
1.381 |
C17 |
N18 |
1.354 |
1.319 |
C17 |
H17 |
1.080 |
1.080 |
N18 |
C19 |
1.358 |
1.324 |
C19 |
N35 |
1.397 |
1.390 |
C19 |
C20 |
1.398 |
1.391 |
C20 |
H20 |
1.080 |
1.080 |
N21 |
C24 |
1.405 |
1.345 |
C22 |
N21 |
1.429 |
1.339 |
C22 |
N23 |
1.382 |
1.339 |
N23 |
C29 |
1.391 |
1.413 |
N23 |
HN23 |
1.000 |
0.970 |
C24 |
C28 |
1.459 |
1.482 |
C24 |
O25 |
1.228 |
1.217 |
O26 |
C22 |
1.246 |
1.216 |
C27 |
H27 |
1.080 |
1.080 |
C28 |
C27 |
1.374 |
1.365 |
C29 |
C28 |
1.416 |
1.461 |
C29 |
C30 |
1.372 |
1.338 |
C30 |
S31 |
1.721 |
1.753 |
C30 |
H30 |
1.080 |
1.080 |
S31 |
C27 |
1.717 |
1.702 |
N35 |
HN35 |
1.000 |
0.970 |
N35 |
HN3A |
1.000 |
0.971 |
Bond Angles for 054
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C15 |
117.1 |
119.8 |
C1 |
C2 |
C3 |
121.4 |
120.8 |
C1 |
C2 |
H2 |
119.3 |
119.6 |
C4 |
C1 |
C15 |
121.7 |
119.8 |
C1 |
C15 |
F32 |
111.5 |
109.5 |
C1 |
C15 |
F33 |
112.0 |
109.5 |
C1 |
C15 |
F34 |
115.4 |
109.5 |
C3 |
C2 |
H2 |
119.3 |
119.6 |
C2 |
C3 |
H3 |
121.6 |
120.1 |
C6 |
C3 |
H3 |
121.6 |
120.1 |
C5 |
C4 |
H4 |
120.8 |
120.1 |
C4 |
C5 |
C6 |
118.8 |
119.9 |
N7 |
C8 |
C9 |
105.4 |
108.9 |
C8 |
C9 |
N21 |
123.0 |
126.7 |
C9 |
N21 |
C24 |
115.6 |
118.9 |
H13 |
C13 |
H13A |
110.6 |
109.5 |
C14 |
C13 |
H13 |
108.3 |
109.5 |
C14 |
C13 |
H13A |
108.3 |
109.5 |
C16 |
C14 |
C20 |
118.8 |
118.5 |
C14 |
C20 |
C19 |
118.7 |
119.1 |
C14 |
C20 |
H20 |
120.6 |
120.5 |
F32 |
C15 |
F33 |
106.1 |
109.5 |
F32 |
C15 |
F34 |
106.6 |
109.5 |
F33 |
C15 |
F34 |
104.6 |
109.5 |
C17 |
C16 |
H16 |
120.6 |
120.3 |
N18 |
C17 |
H17 |
118.2 |
119.6 |
C17 |
N18 |
C19 |
117.4 |
121.6 |
N18 |
C19 |
N35 |
118.3 |
119.7 |
N18 |
C19 |
C20 |
122.6 |
120.6 |
C20 |
C19 |
N35 |
119.1 |
119.7 |
C19 |
N35 |
HN35 |
109.5 |
120.0 |
C19 |
N35 |
HN3A |
109.5 |
120.0 |
C19 |
C20 |
H20 |
120.7 |
120.5 |
C22 |
N21 |
C24 |
128.0 |
122.1 |
N21 |
C24 |
C28 |
112.1 |
118.9 |
N21 |
C24 |
O25 |
124.8 |
120.6 |
C22 |
N23 |
C29 |
121.8 |
120.7 |
C22 |
N23 |
HN23 |
119.1 |
119.6 |
C29 |
N23 |
HN23 |
119.1 |
119.6 |
N23 |
C29 |
C28 |
120.7 |
117.6 |
N23 |
C29 |
C30 |
126.4 |
129.9 |
O25 |
C24 |
C28 |
123.0 |
120.5 |
C24 |
C28 |
C27 |
126.4 |
130.2 |
C28 |
C27 |
H27 |
123.9 |
124.3 |
S31 |
C27 |
H27 |
123.9 |
124.3 |
C29 |
C30 |
S31 |
111.6 |
111.1 |
C29 |
C30 |
H30 |
124.2 |
124.5 |
S31 |
C30 |
H30 |
124.2 |
124.5 |
HN35 |
N35 |
HN3A |
109.5 |
120.0 |
Torsion Angles for 054
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C4 |
C1 |
C2 |
C15 |
180.4 |
180.3 |
C2 |
C1 |
C15 |
F32 |
303.5 |
0.0 |
C2 |
C1 |
C15 |
F33 |
62.2 |
120.0 |
C2 |
C1 |
C15 |
F34 |
181.7 |
240.0 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
C1 |
C2 |
C3 |
H3 |
179.7 |
180.0 |
C15 |
C1 |
C2 |
C3 |
179.6 |
180.0 |
C15 |
C1 |
C2 |
H2 |
359.6 |
360.0 |
F32 |
C15 |
C1 |
F33 |
241.3 |
240.0 |
F32 |
C15 |
C1 |
F34 |
121.8 |
120.0 |
F33 |
C15 |
C1 |
F34 |
240.5 |
240.0 |
C3 |
C2 |
C1 |
C15 |
179.6 |
180.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
C6 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
H2 |
C2 |
C1 |
C15 |
359.6 |
360.0 |
C1 |
C2 |
H2 |
C3 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
H3 |
359.6 |
0.0 |
H3 |
C3 |
C2 |
H2 |
359.6 |
0.0 |
C2 |
C1 |
C4 |
C15 |
179.6 |
179.7 |
C4 |
C1 |
C2 |
H2 |
180.0 |
180.2 |
C4 |
C1 |
C15 |
F32 |
123.1 |
179.7 |
C4 |
C1 |
C15 |
F33 |
241.8 |
299.7 |
C4 |
C1 |
C15 |
F34 |
1.3 |
59.7 |
C5 |
C4 |
C1 |
C15 |
180.8 |
180.3 |
H4 |
C4 |
C1 |
C15 |
0.7 |
0.3 |
H4 |
C4 |
C5 |
C6 |
179.6 |
179.5 |
C5 |
C6 |
C3 |
H3 |
180.3 |
179.5 |
C6 |
C5 |
C4 |
H4 |
179.6 |
179.5 |
C6 |
C3 |
C2 |
H2 |
179.7 |
180.0 |
C2 |
C3 |
C6 |
H3 |
180.0 |
180.1 |
N7 |
C6 |
C3 |
H3 |
0.6 |
0.4 |
N7 |
C8 |
C9 |
N21 |
179.8 |
180.0 |
C8 |
C9 |
N21 |
C24 |
249.0 |
89.9 |
C9 |
C5 |
C4 |
H4 |
359.2 |
0.1 |
C22 |
N21 |
C9 |
C24 |
175.5 |
180.2 |
C9 |
N21 |
C24 |
C28 |
172.4 |
180.0 |
C9 |
N21 |
C24 |
O25 |
354.9 |
0.0 |
C10 |
C8 |
C9 |
N21 |
358.5 |
0.5 |
C14 |
C13 |
H13 |
H13A |
241.5 |
240.0 |
C14 |
C13 |
H13A |
H13 |
118.6 |
120.0 |
H13 |
C13 |
C14 |
H13A |
120.0 |
120.0 |
C20 |
C14 |
C13 |
H13 |
248.6 |
330.0 |
C20 |
C14 |
C13 |
H13A |
128.6 |
210.0 |
N18 |
C19 |
C20 |
C14 |
0.4 |
0.5 |
C14 |
C20 |
C19 |
N35 |
180.4 |
180.4 |
C19 |
C20 |
C14 |
H20 |
180.0 |
179.7 |
C1 |
C15 |
F32 |
F33 |
122.2 |
120.0 |
C1 |
C15 |
F32 |
F34 |
233.2 |
240.0 |
F33 |
C15 |
F32 |
F34 |
111.0 |
120.0 |
C1 |
C15 |
F33 |
F32 |
238.1 |
240.0 |
C1 |
C15 |
F33 |
F34 |
125.7 |
120.0 |
F32 |
C15 |
F33 |
F34 |
247.5 |
240.0 |
C1 |
C15 |
F34 |
F32 |
124.4 |
120.0 |
C1 |
C15 |
F34 |
F33 |
236.5 |
240.0 |
F32 |
C15 |
F34 |
F33 |
112.1 |
120.0 |
C16 |
C14 |
C13 |
H13 |
66.1 |
150.3 |
C16 |
C14 |
C13 |
H13A |
306.1 |
30.3 |
C16 |
C14 |
C20 |
C19 |
1.5 |
359.5 |
C16 |
C14 |
C20 |
H20 |
181.5 |
179.8 |
H16 |
C16 |
C14 |
C20 |
177.6 |
180.3 |
C17 |
C16 |
C14 |
C20 |
357.7 |
0.3 |
N18 |
C17 |
C16 |
H16 |
181.5 |
180.0 |
C17 |
N18 |
C19 |
N35 |
178.7 |
179.9 |
C17 |
N18 |
C19 |
C20 |
358.7 |
359.8 |
H17 |
C17 |
C16 |
H16 |
1.5 |
0.0 |
H17 |
C17 |
N18 |
C19 |
180.4 |
179.9 |
C14 |
C20 |
C19 |
N18 |
0.4 |
0.5 |
C19 |
N18 |
C17 |
H17 |
180.4 |
179.9 |
C20 |
C19 |
N18 |
N35 |
180.0 |
179.8 |
N18 |
C19 |
N35 |
HN35 |
360.0 |
0.1 |
N18 |
C19 |
N35 |
HN3A |
120.0 |
180.0 |
N18 |
C19 |
C20 |
H20 |
180.4 |
180.2 |
N18 |
C19 |
N35 |
C20 |
180.0 |
179.8 |
N35 |
C19 |
C20 |
H20 |
0.4 |
0.1 |
HN35 |
N35 |
C19 |
HN3A |
240.0 |
180.1 |
C14 |
C20 |
C19 |
H20 |
180.0 |
180.3 |
N18 |
C19 |
C20 |
N35 |
180.0 |
180.2 |
C20 |
C19 |
N35 |
HN35 |
180.0 |
180.3 |
C20 |
C19 |
N35 |
HN3A |
300.0 |
0.1 |
C14 |
C20 |
H20 |
C19 |
180.0 |
179.7 |
H20 |
C20 |
C19 |
N35 |
0.4 |
0.1 |
O25 |
C24 |
N21 |
C28 |
182.5 |
180.0 |
N21 |
C24 |
C28 |
C27 |
181.8 |
180.0 |
C9 |
N21 |
C22 |
C24 |
185.1 |
179.8 |
C22 |
N21 |
C24 |
C28 |
357.5 |
359.8 |
C22 |
N21 |
C24 |
O25 |
180.0 |
179.8 |
N23 |
C22 |
N21 |
C24 |
0.6 |
0.2 |
C29 |
N23 |
C22 |
HN23 |
180.0 |
180.0 |
C22 |
N23 |
C29 |
C28 |
357.8 |
359.7 |
C22 |
N23 |
C29 |
C30 |
177.9 |
180.0 |
C22 |
N23 |
C29 |
HN23 |
180.0 |
180.0 |
N23 |
C29 |
C30 |
S31 |
180.0 |
180.0 |
N23 |
C29 |
C30 |
H30 |
360.0 |
359.9 |
C22 |
N23 |
HN23 |
C29 |
180.0 |
180.0 |
HN23 |
N23 |
C29 |
C28 |
177.8 |
179.8 |
HN23 |
N23 |
C29 |
C30 |
357.9 |
0.1 |
N21 |
C24 |
C28 |
O25 |
182.4 |
180.0 |
N23 |
C29 |
C28 |
C24 |
360.0 |
0.2 |
C24 |
C28 |
C27 |
H27 |
359.9 |
360.0 |
N21 |
C24 |
O25 |
C28 |
177.2 |
180.0 |
O25 |
C24 |
C28 |
C27 |
359.3 |
360.0 |
O26 |
C22 |
N23 |
C29 |
180.8 |
180.0 |
O26 |
C22 |
N23 |
HN23 |
0.8 |
359.9 |
N23 |
C29 |
C28 |
C27 |
180.3 |
180.2 |
S31 |
C27 |
C28 |
H27 |
180.0 |
179.7 |
C28 |
C29 |
N23 |
HN23 |
177.8 |
179.8 |
N23 |
C29 |
C28 |
C30 |
180.0 |
180.2 |
C29 |
C28 |
C27 |
H27 |
179.6 |
180.0 |
C30 |
C29 |
N23 |
HN23 |
357.9 |
0.1 |
N23 |
C29 |
C30 |
C28 |
180.0 |
179.7 |
S31 |
C30 |
C29 |
H30 |
180.0 |
180.1 |
C30 |
S31 |
C27 |
H27 |
180.4 |
180.1 |
C29 |
C30 |
S31 |
H30 |
180.0 |
179.9 |
C29 |
C30 |
H30 |
S31 |
180.0 |
180.1 |
C28 |
C27 |
S31 |
H27 |
180.0 |
180.3 |
C19 |
N35 |
HN35 |
HN3A |
120.0 |
179.9 |
C19 |
N35 |
HN3A |
HN35 |
240.0 |
180.1 |