PDB Chemical Component 054

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 054

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.404 1.389
C1 C15 1.495 1.507
C2 C3 1.389 1.376
C2 H2 1.080 1.080
C3 H3 1.080 1.080
C4 C1 1.413 1.366
C4 C5 1.406 1.397
C4 H4 1.080 1.080
C5 C6 1.406 1.407
C6 C3 1.405 1.393
N7 C6 1.364 1.375
N7 C8 1.374 1.386
C8 C9 1.392 1.379
C9 C5 1.420 1.464
C9 N21 1.402 1.394
C10 C8 1.466 1.462
O11 C10 1.216 1.217
O12 C10 1.347 1.349
O12 HO12 0.950 0.966
C13 N7 1.446 1.465
C13 H13 1.100 1.091
C13 H13A 1.100 1.090
C14 C13 1.497 1.507
C14 C20 1.402 1.384
C15 F32 1.353 1.398
C15 F33 1.349 1.399
C15 F34 1.346 1.399
C16 C14 1.394 1.388
C16 H16 1.080 1.080
C17 C16 1.379 1.381
C17 N18 1.354 1.319
C17 H17 1.080 1.080
N18 C19 1.358 1.324
C19 N35 1.397 1.390
C19 C20 1.398 1.391
C20 H20 1.080 1.080
N21 C24 1.405 1.345
C22 N21 1.429 1.339
C22 N23 1.382 1.339
N23 C29 1.391 1.413
N23 HN23 1.000 0.970
C24 C28 1.459 1.482
C24 O25 1.228 1.217
O26 C22 1.246 1.216
C27 H27 1.080 1.080
C28 C27 1.374 1.365
C29 C28 1.416 1.461
C29 C30 1.372 1.338
C30 S31 1.721 1.753
C30 H30 1.080 1.080
S31 C27 1.717 1.702
N35 HN35 1.000 0.970
N35 HN3A 1.000 0.971

Bond Angles for 054

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C15 117.1 119.8
C1 C2 C3 121.4 120.8
C1 C2 H2 119.3 119.6
C4 C1 C15 121.7 119.8
C1 C15 F32 111.5 109.5
C1 C15 F33 112.0 109.5
C1 C15 F34 115.4 109.5
C3 C2 H2 119.3 119.6
C2 C3 H3 121.6 120.1
C6 C3 H3 121.6 120.1
C5 C4 H4 120.8 120.1
C4 C5 C6 118.8 119.9
N7 C8 C9 105.4 108.9
C8 C9 N21 123.0 126.7
C9 N21 C24 115.6 118.9
H13 C13 H13A 110.6 109.5
C14 C13 H13 108.3 109.5
C14 C13 H13A 108.3 109.5
C16 C14 C20 118.8 118.5
C14 C20 C19 118.7 119.1
C14 C20 H20 120.6 120.5
F32 C15 F33 106.1 109.5
F32 C15 F34 106.6 109.5
F33 C15 F34 104.6 109.5
C17 C16 H16 120.6 120.3
N18 C17 H17 118.2 119.6
C17 N18 C19 117.4 121.6
N18 C19 N35 118.3 119.7
N18 C19 C20 122.6 120.6
C20 C19 N35 119.1 119.7
C19 N35 HN35 109.5 120.0
C19 N35 HN3A 109.5 120.0
C19 C20 H20 120.7 120.5
C22 N21 C24 128.0 122.1
N21 C24 C28 112.1 118.9
N21 C24 O25 124.8 120.6
C22 N23 C29 121.8 120.7
C22 N23 HN23 119.1 119.6
C29 N23 HN23 119.1 119.6
N23 C29 C28 120.7 117.6
N23 C29 C30 126.4 129.9
O25 C24 C28 123.0 120.5
C24 C28 C27 126.4 130.2
C28 C27 H27 123.9 124.3
S31 C27 H27 123.9 124.3
C29 C30 S31 111.6 111.1
C29 C30 H30 124.2 124.5
S31 C30 H30 124.2 124.5
HN35 N35 HN3A 109.5 120.0

Torsion Angles for 054

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4 C1 C2 C15 180.4 180.3
C2 C1 C15 F32 303.5 0.0
C2 C1 C15 F33 62.2 120.0
C2 C1 C15 F34 181.7 240.0
C3 C2 C1 H2 180.0 180.0
C1 C2 C3 H3 179.7 180.0
C15 C1 C2 C3 179.6 180.0
C15 C1 C2 H2 359.6 360.0
F32 C15 C1 F33 241.3 240.0
F32 C15 C1 F34 121.8 120.0
F33 C15 C1 F34 240.5 240.0
C3 C2 C1 C15 179.6 180.0
C1 C2 C3 H2 180.0 180.0
C6 C3 C2 H3 180.0 179.9
H2 C2 C1 C15 359.6 360.0
C1 C2 H2 C3 180.0 180.0
H2 C2 C3 H3 359.6 0.0
H3 C3 C2 H2 359.6 0.0
C2 C1 C4 C15 179.6 179.7
C4 C1 C2 H2 180.0 180.2
C4 C1 C15 F32 123.1 179.7
C4 C1 C15 F33 241.8 299.7
C4 C1 C15 F34 1.3 59.7
C5 C4 C1 C15 180.8 180.3
H4 C4 C1 C15 0.7 0.3
H4 C4 C5 C6 179.6 179.5
C5 C6 C3 H3 180.3 179.5
C6 C5 C4 H4 179.6 179.5
C6 C3 C2 H2 179.7 180.0
C2 C3 C6 H3 180.0 180.1
N7 C6 C3 H3 0.6 0.4
N7 C8 C9 N21 179.8 180.0
C8 C9 N21 C24 249.0 89.9
C9 C5 C4 H4 359.2 0.1
C22 N21 C9 C24 175.5 180.2
C9 N21 C24 C28 172.4 180.0
C9 N21 C24 O25 354.9 0.0
C10 C8 C9 N21 358.5 0.5
C14 C13 H13 H13A 241.5 240.0
C14 C13 H13A H13 118.6 120.0
H13 C13 C14 H13A 120.0 120.0
C20 C14 C13 H13 248.6 330.0
C20 C14 C13 H13A 128.6 210.0
N18 C19 C20 C14 0.4 0.5
C14 C20 C19 N35 180.4 180.4
C19 C20 C14 H20 180.0 179.7
C1 C15 F32 F33 122.2 120.0
C1 C15 F32 F34 233.2 240.0
F33 C15 F32 F34 111.0 120.0
C1 C15 F33 F32 238.1 240.0
C1 C15 F33 F34 125.7 120.0
F32 C15 F33 F34 247.5 240.0
C1 C15 F34 F32 124.4 120.0
C1 C15 F34 F33 236.5 240.0
F32 C15 F34 F33 112.1 120.0
C16 C14 C13 H13 66.1 150.3
C16 C14 C13 H13A 306.1 30.3
C16 C14 C20 C19 1.5 359.5
C16 C14 C20 H20 181.5 179.8
H16 C16 C14 C20 177.6 180.3
C17 C16 C14 C20 357.7 0.3
N18 C17 C16 H16 181.5 180.0
C17 N18 C19 N35 178.7 179.9
C17 N18 C19 C20 358.7 359.8
H17 C17 C16 H16 1.5 0.0
H17 C17 N18 C19 180.4 179.9
C14 C20 C19 N18 0.4 0.5
C19 N18 C17 H17 180.4 179.9
C20 C19 N18 N35 180.0 179.8
N18 C19 N35 HN35 360.0 0.1
N18 C19 N35 HN3A 120.0 180.0
N18 C19 C20 H20 180.4 180.2
N18 C19 N35 C20 180.0 179.8
N35 C19 C20 H20 0.4 0.1
HN35 N35 C19 HN3A 240.0 180.1
C14 C20 C19 H20 180.0 180.3
N18 C19 C20 N35 180.0 180.2
C20 C19 N35 HN35 180.0 180.3
C20 C19 N35 HN3A 300.0 0.1
C14 C20 H20 C19 180.0 179.7
H20 C20 C19 N35 0.4 0.1
O25 C24 N21 C28 182.5 180.0
N21 C24 C28 C27 181.8 180.0
C9 N21 C22 C24 185.1 179.8
C22 N21 C24 C28 357.5 359.8
C22 N21 C24 O25 180.0 179.8
N23 C22 N21 C24 0.6 0.2
C29 N23 C22 HN23 180.0 180.0
C22 N23 C29 C28 357.8 359.7
C22 N23 C29 C30 177.9 180.0
C22 N23 C29 HN23 180.0 180.0
N23 C29 C30 S31 180.0 180.0
N23 C29 C30 H30 360.0 359.9
C22 N23 HN23 C29 180.0 180.0
HN23 N23 C29 C28 177.8 179.8
HN23 N23 C29 C30 357.9 0.1
N21 C24 C28 O25 182.4 180.0
N23 C29 C28 C24 360.0 0.2
C24 C28 C27 H27 359.9 360.0
N21 C24 O25 C28 177.2 180.0
O25 C24 C28 C27 359.3 360.0
O26 C22 N23 C29 180.8 180.0
O26 C22 N23 HN23 0.8 359.9
N23 C29 C28 C27 180.3 180.2
S31 C27 C28 H27 180.0 179.7
C28 C29 N23 HN23 177.8 179.8
N23 C29 C28 C30 180.0 180.2
C29 C28 C27 H27 179.6 180.0
C30 C29 N23 HN23 357.9 0.1
N23 C29 C30 C28 180.0 179.7
S31 C30 C29 H30 180.0 180.1
C30 S31 C27 H27 180.4 180.1
C29 C30 S31 H30 180.0 179.9
C29 C30 H30 S31 180.0 180.1
C28 C27 S31 H27 180.0 180.3
C19 N35 HN35 HN3A 120.0 179.9
C19 N35 HN3A HN35 240.0 180.1