PDB Chemical Component 04X

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 04X

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C2	C1	1.485	1.531
C2	O1	1.366	1.431
C	CA	1.551	1.507
C	O	1.172	1.208
N1	C1	1.452	1.470
N1	C0	1.456	1.469
N1	C4	1.462	1.470
O1	C3	1.388	1.430
CA	N	1.424	1.472
CA	CB	1.465	1.531
N	CE	1.424	1.469
C4	C3	1.506	1.531
CB	CG	1.465	1.504
CG	CD	1.320	1.298
CD	CE	1.515	1.501
CD	C0	1.544	1.507
C2	H4	1.100	1.090
C2	H5	1.100	1.090
C1	H15	1.100	1.090
C1	H16	1.100	1.090
CA	HA	1.100	1.090
C4	H32	1.100	1.090
C4	H33	1.100	1.090
CB	H39	1.100	1.090
CB	H40	1.100	1.090
CG	H41	1.080	1.080
CE	H44	1.100	1.091
CE	H45	1.100	1.090
C0	H55	1.100	1.090
C0	H56	1.100	1.090
C3	H63	1.100	1.090
C3	H64	1.100	1.090
C	OXT	1.412	1.342
OXT	HXT	0.950	0.967
N	H	1.000	1.009

Bond Angles for 04X

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	O1	104.8	109.2
C2	C1	N1	104.0	109.3
C1	C2	H4	110.6	109.5
C1	C2	H5	110.6	109.5
C2	C1	H15	110.8	109.5
C2	C1	H16	110.8	109.5
C2	O1	C3	118.4	113.7
O1	C2	H4	110.6	109.5
O1	C2	H5	110.6	109.5
CA	C	O	121.0	120.0
C	CA	N	99.2	109.6
C	CA	CB	112.2	109.6
C	CA	HA	108.9	109.6
CA	C	OXT	124.7	120.0
O	C	OXT	114.4	120.0
C1	N1	C0	131.4	111.0
C1	N1	C4	119.4	110.7
N1	C1	H15	110.8	109.5
N1	C1	H16	110.8	109.5
C4	N1	C0	109.2	111.0
N1	C0	CD	109.1	109.5
N1	C0	H55	109.6	109.5
N1	C0	H56	109.6	109.4
N1	C4	C3	106.6	109.3
N1	C4	H32	110.2	109.5
N1	C4	H33	110.2	109.5
O1	C3	C4	110.4	109.3
O1	C3	H63	109.2	109.5
O1	C3	H64	109.2	109.5
N	CA	CB	115.2	108.5
CA	N	CE	118.8	110.2
N	CA	HA	110.7	109.7
CA	N	H	107.1	111.0
CA	CB	CG	110.5	109.7
CB	CA	HA	110.1	109.8
CA	CB	H39	109.2	109.4
CA	CB	H40	109.2	109.4
N	CE	CD	108.9	110.3
N	CE	H44	109.6	109.3
N	CE	H45	109.6	109.3
CE	N	H	107.1	111.0
C3	C4	H32	110.2	109.5
C3	C4	H33	110.2	109.5
C4	C3	H63	109.3	109.5
C4	C3	H64	109.3	109.5
CB	CG	CD	125.4	122.9
CG	CB	H39	109.2	109.5
CG	CB	H40	109.2	109.4
CB	CG	H41	117.3	118.6
CG	CD	CE	122.1	123.3
CG	CD	C0	111.5	118.4
CD	CG	H41	117.3	118.5
CE	CD	C0	126.3	118.3
CD	CE	H44	109.6	109.3
CD	CE	H45	109.6	109.4
CD	C0	H55	109.6	109.5
CD	C0	H56	109.5	109.5
H4	C2	H5	109.5	109.6
H15	C1	H16	109.5	109.5
H32	C4	H33	109.5	109.5
H39	CB	H40	109.5	109.4
H44	CE	H45	109.5	109.2
H55	C0	H56	109.5	109.5
H63	C3	H64	109.5	109.5
C	OXT	HXT	109.5	117.1

Torsion Angles for 04X

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	O1	C3	291.3	58.7
O1	C2	C1	H4	240.8	240.1
O1	C2	C1	H5	119.3	119.9
C2	C1	N1	C0	117.3	182.4
C2	C1	N1	C4	300.6	58.6
N1	C1	C2	H15	240.9	240.1
N1	C1	C2	H16	119.1	119.9
H4	C2	C1	H5	238.5	239.8
H15	C1	C2	H16	238.2	239.9
O1	C2	C1	N1	61.3	303.1
C1	C2	O1	H4	119.3	119.9
C1	C2	O1	H5	240.7	240.1
O1	C2	C1	H15	180.4	63.1
O1	C2	C1	H16	302.1	183.2
C2	O1	C3	C4	58.6	301.3
C2	O1	C3	H63	178.8	61.3
C2	O1	C3	H64	298.5	181.4
H4	C2	O1	H5	121.5	120.2
O	C	CA	OXT	181.4	180.0
N	CA	C	CB	237.9	241.0
C	CA	N	CE	65.8	188.5
N	CA	C	HA	115.7	120.4
C	CA	N	H	187.1	311.9
C	CA	CB	CG	282.2	191.3
CB	CA	C	HA	237.8	239.4
C	CA	CB	H39	42.4	311.4
C	CA	CB	H40	162.1	71.3
CA	C	OXT	HXT	181.3	180.0
O	C	CA	N	215.9	340.0
O	C	CA	CB	338.0	99.0
O	C	CA	HA	100.1	219.6
CA	C	O	OXT	178.7	180.0
O	C	OXT	HXT	0.0	360.0
N1	C1	C2	O1	61.3	303.1
N1	C1	C2	H4	180.5	63.1
N1	C1	C2	H5	302.0	183.2
C2	C1	N1	H15	119.1	119.9
C2	C1	N1	H16	240.9	240.1
C4	N1	C1	C0	183.3	236.2
C1	N1	C0	CD	333.3	170.0
C1	N1	C0	H55	93.3	290.0
C1	N1	C0	H56	213.4	50.0
C1	N1	C4	C3	48.8	301.4
C1	N1	C4	H32	168.3	61.3
C1	N1	C4	H33	289.2	181.4
H15	C1	N1	H16	121.7	120.1
C1	N1	C0	C4	183.0	236.4
C0	N1	C1	H15	358.2	62.5
C0	N1	C1	H16	236.4	302.3
C0	N1	C4	C3	231.4	177.6
C0	N1	C4	H32	351.0	297.6
C0	N1	C4	H33	111.8	57.7
CG	CD	C0	N1	268.3	95.0
CE	CD	C0	N1	88.3	275.0
CD	C0	N1	H55	240.0	240.0
CD	C0	N1	H56	119.9	120.0
H55	C0	N1	H56	239.9	240.0
C1	N1	C4	C0	177.4	123.7
C4	N1	C1	H15	181.5	298.7
C4	N1	C1	H16	59.7	178.6
C4	N1	C0	CD	150.3	293.6
C4	N1	C0	H55	270.2	53.6
C4	N1	C0	H56	30.3	173.6
O1	C3	C4	N1	318.5	56.9
C3	C4	N1	H32	240.4	240.0
C3	C4	N1	H33	119.6	120.0
N1	C4	C3	H63	198.4	296.9
N1	C4	C3	H64	78.6	176.8
H32	C4	N1	H33	239.1	239.9
C3	O1	C2	H4	172.0	298.8
C3	O1	C2	H5	50.5	178.6
N1	C4	C3	O1	318.5	56.9
O1	C3	C4	H32	198.9	296.9
O1	C3	C4	H33	78.0	176.8
C4	C3	O1	H63	239.8	240.1
C4	C3	O1	H64	120.1	119.9
H63	C3	O1	H64	240.3	239.9
N	CA	C	O	215.9	340.0
C	CA	N	CB	119.9	119.7
C	CA	N	HA	245.6	239.6
N	CA	C	OXT	34.4	160.0
N	CA	CB	CG	34.7	311.0
CB	CA	N	HA	125.7	119.9
N	CA	CB	H39	154.9	71.1
N	CA	CB	H40	274.6	191.0
CA	N	CE	CD	40.7	309.1
CA	N	CE	H44	160.6	69.3
CA	N	CE	H45	280.8	188.8
CE	N	CA	H	238.6	236.6
CB	CA	C	O	338.0	99.0
C	CA	CB	N	247.5	240.3
C	CA	CB	HA	121.5	120.5
CB	CA	C	OXT	156.6	279.0
CB	CA	N	CE	305.8	68.8
N	CA	CB	HA	234.0	240.2
CB	CA	N	H	67.2	192.2
CA	CB	CG	CD	349.4	16.5
CG	CB	CA	H39	239.8	239.9
CG	CB	CA	H40	120.2	120.0
CA	CB	CG	H41	169.4	196.4
H39	CB	CA	H40	240.3	240.1
CE	N	CA	CB	305.8	68.8
CE	N	CA	HA	180.1	308.9
CA	N	CE	H	121.3	123.4
CG	CD	CE	N	345.5	17.1
N	CE	CD	C0	165.5	197.1
CD	CE	N	H44	240.1	239.8
CD	CE	N	H45	119.9	120.3
H44	CE	N	H45	239.8	240.5
C3	C4	N1	C0	231.4	177.6
N1	C4	C3	H32	119.6	119.9
N1	C4	C3	H33	240.5	240.1
O1	C3	C4	H63	120.2	120.0
O1	C3	C4	H64	239.9	240.1
H32	C4	C3	H33	120.9	120.1
H63	C3	C4	H64	119.7	120.1
CG	CB	CA	HA	160.7	70.9
CA	CB	CG	H39	120.2	120.0
CA	CB	CG	H40	239.8	240.0
CB	CG	CD	CE	1.0	359.6
CB	CG	CD	C0	181.0	179.6
CD	CG	CB	H41	180.0	180.1
H39	CB	CG	H40	119.7	119.9
N1	C0	CD	CG	268.3	95.0
N	CE	CD	CG	345.5	17.1
CD	CG	CB	H39	229.2	256.5
CD	CG	CB	H40	109.6	136.6
CB	CG	CD	H41	180.0	179.9
CE	CD	CG	C0	180.0	180.0
CG	CD	CE	H44	225.6	256.9
CG	CD	CE	H45	105.4	137.3
CG	CD	C0	H55	148.3	335.0
CG	CD	C0	H56	28.2	215.0
N1	C0	CD	CE	88.3	275.0
N	CE	CD	H44	119.9	120.2
N	CE	CD	H45	240.1	239.7
CD	CE	N	H	279.3	185.7
CG	CD	CE	C0	180.0	180.0
CE	CD	CG	H41	181.0	179.7
CE	CD	C0	H55	328.4	155.0
CE	CD	C0	H56	208.3	34.9
H44	CE	CD	H45	120.2	119.5
N1	C0	CD	H55	120.0	120.0
N1	C0	CD	H56	240.1	240.0
CG	CD	C0	CE	180.0	180.0
C0	CD	CG	H41	1.0	359.7
C0	CD	CE	H44	45.6	76.9
C0	CD	CE	H45	285.4	317.3
H55	C0	CD	H56	120.1	120.0
C1	C2	H4	O1	244.3	240.2
H4	C2	C1	N1	180.5	63.1
C1	C2	H4	H5	122.2	120.1
H4	C2	C1	H15	299.6	183.0
H4	C2	C1	H16	61.4	303.1
H4	C2	O1	C3	172.0	298.8
O1	C2	H4	H5	237.9	239.9
C1	C2	H5	O1	115.7	119.7
H5	C2	C1	N1	302.0	183.2
C1	C2	H5	H4	237.8	239.9
H5	C2	C1	H15	61.1	303.1
H5	C2	C1	H16	182.9	63.3
H5	C2	O1	C3	50.5	178.6
O1	C2	H5	H4	122.1	120.1
H15	C1	C2	O1	180.4	63.1
C2	C1	H15	N1	245.0	240.2
H15	C1	C2	H4	299.6	183.0
H15	C1	C2	H5	61.1	303.1
C2	C1	H15	H16	122.5	120.1
H15	C1	N1	C0	358.2	62.5
H15	C1	N1	C4	181.5	298.7
N1	C1	H15	H16	237.5	239.9
H16	C1	C2	O1	302.1	183.2
C2	C1	H16	N1	114.9	119.8
H16	C1	C2	H4	61.4	303.1
H16	C1	C2	H5	182.9	63.3
C2	C1	H16	H15	237.5	239.9
H16	C1	N1	C0	236.4	302.3
H16	C1	N1	C4	59.7	178.6
N1	C1	H16	H15	122.5	120.1
HA	CA	C	O	100.1	219.6
C	CA	HA	N	108.1	120.4
C	CA	HA	CB	236.6	239.5
HA	CA	C	OXT	278.7	39.6
N	CA	HA	CB	128.5	119.1
HA	CA	N	CE	180.1	308.9
HA	CA	N	H	301.5	72.2
HA	CA	CB	CG	160.7	70.9
HA	CA	CB	H39	280.9	190.9
HA	CA	CB	H40	40.6	310.8
H32	C4	N1	C0	351.0	297.6
N1	C4	H32	C3	242.6	240.2
N1	C4	H32	H33	121.3	120.1
C3	C4	H32	H33	238.7	239.9
H32	C4	C3	H63	78.8	177.0
H32	C4	C3	H64	319.1	56.9
H33	C4	N1	C0	111.8	57.7
N1	C4	H33	C3	117.3	119.8
N1	C4	H33	H32	238.7	239.9
C3	C4	H33	H32	121.3	120.1
H33	C4	C3	H63	317.9	56.8
H33	C4	C3	H64	198.2	296.7
CA	CB	H39	CG	239.0	239.8
H39	CB	CA	HA	280.9	190.9
CA	CB	H39	H40	119.5	119.9
H39	CB	CG	CD	229.2	256.5
CG	CB	H39	H40	240.5	240.1
H39	CB	CG	H41	49.2	76.4
CA	CB	H40	CG	121.0	120.2
H40	CB	CA	HA	40.6	310.8
CA	CB	H40	H39	240.5	240.1
H40	CB	CG	CD	109.6	136.6
CG	CB	H40	H39	119.5	119.9
H40	CB	CG	H41	289.5	316.4
CB	CG	H41	CD	180.0	180.1
H41	CG	CB	H39	49.2	76.4
H41	CG	CB	H40	289.5	316.4
H41	CG	CD	CE	181.0	179.7
H41	CG	CD	C0	1.0	359.7
N	CE	H44	CD	240.5	239.2
N	CE	H44	H45	120.3	119.6
H44	CE	N	H	39.3	306.0
H44	CE	CD	C0	45.6	76.9
CD	CE	H44	H45	239.8	240.3
N	CE	H45	CD	119.5	120.8
N	CE	H45	H44	239.7	240.5
H45	CE	N	H	159.5	65.4
H45	CE	CD	C0	285.4	317.3
CD	CE	H45	H44	120.3	119.6
N1	C0	H55	CD	240.3	240.0
N1	C0	H55	H56	120.2	120.0
CD	C0	H55	H56	239.8	239.9
N1	C0	H56	CD	119.7	120.0
N1	C0	H56	H55	239.8	240.0
CD	C0	H56	H55	120.2	120.1
O1	C3	H63	C4	239.2	240.2
O1	C3	H63	H64	119.6	120.1
H63	C3	C4	H32	78.8	177.0
H63	C3	C4	H33	317.9	56.8
C4	C3	H63	H64	240.4	239.9
O1	C3	H64	C4	120.8	119.8
O1	C3	H64	H63	240.4	239.8
H64	C3	C4	H32	319.1	56.9
H64	C3	C4	H33	198.2	296.7
C4	C3	H64	H63	119.6	120.1
CA	C	OXT	O	181.3	180.0
OXT	C	CA	N	34.4	160.0
OXT	C	CA	CB	156.6	279.0
OXT	C	CA	HA	278.7	39.6
H	N	CA	CB	67.2	192.2
CA	N	H	CE	231.5	237.1
H	N	CA	HA	301.5	72.2
H	N	CE	CD	279.3	185.7
H	N	CE	H44	39.3	306.0
H	N	CE	H45	159.5	65.4