PDB Chemical Component 04J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 04J
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
C |
1.326 |
1.348 |
| C11 |
C |
1.502 |
1.475 |
| C |
O |
1.407 |
1.216 |
| N |
CA |
1.450 |
1.465 |
| N |
HN |
1.000 |
0.970 |
| C2 |
N1 |
1.377 |
1.318 |
| N1 |
C8A |
1.379 |
1.338 |
| O1 |
CT |
1.250 |
1.208 |
| NA2 |
C2 |
1.327 |
1.382 |
| C2 |
N3 |
1.380 |
1.330 |
| CT |
O2 |
1.249 |
1.342 |
| O2 |
HO2 |
0.949 |
0.967 |
| N3 |
C4 |
1.381 |
1.326 |
| C4 |
NA4 |
1.332 |
1.377 |
| C4 |
C4A |
1.387 |
1.465 |
| C4A |
N5 |
1.382 |
1.329 |
| N5 |
C6 |
1.383 |
1.316 |
| C7 |
C6 |
1.389 |
1.395 |
| C6 |
C9 |
1.512 |
1.507 |
| N8 |
C7 |
1.381 |
1.316 |
| C7 |
H7 |
1.080 |
1.080 |
| C8A |
N8 |
1.377 |
1.336 |
| C9 |
N10 |
1.452 |
1.466 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H9A |
1.100 |
1.090 |
| CB |
CA |
1.528 |
1.530 |
| CA |
CT |
1.505 |
1.507 |
| CA |
HA |
1.100 |
1.090 |
| CB |
CG |
1.527 |
1.530 |
| CB |
HB |
1.100 |
1.090 |
| CB |
HBA |
1.100 |
1.090 |
| OE1 |
CD |
1.250 |
1.208 |
| CD |
CG |
1.510 |
1.507 |
| CD |
OE2 |
1.251 |
1.343 |
| CG |
HG |
1.100 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| N10 |
C14 |
1.422 |
1.391 |
| N10 |
HN10 |
1.000 |
0.970 |
| C16 |
C11 |
1.396 |
1.398 |
| C12 |
C11 |
1.389 |
1.397 |
| C13 |
C12 |
1.388 |
1.377 |
| C12 |
H12 |
1.080 |
1.080 |
| C14 |
C13 |
1.389 |
1.392 |
| C13 |
H13 |
1.080 |
1.080 |
| C14 |
C15 |
1.393 |
1.393 |
| C15 |
C16 |
1.396 |
1.376 |
| C15 |
H15 |
1.080 |
1.080 |
| C16 |
H16 |
1.080 |
1.080 |
| C8A |
C4A |
1.390 |
1.417 |
| NA2 |
HNA2 |
1.000 |
0.969 |
| NA2 |
HNAA |
1.000 |
0.970 |
| NA4 |
HNA4 |
1.001 |
0.970 |
| NA4 |
HNAB |
1.000 |
0.970 |
| OE2 |
HOE2 |
0.950 |
0.967 |
Bond Angles for 04J
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
C |
O |
120.7 |
120.0 |
| CA |
N |
HN |
120.4 |
120.0 |
| N |
CA |
CT |
112.2 |
109.5 |
| N |
CA |
HA |
108.5 |
109.5 |
| C2 |
N1 |
C8A |
119.8 |
121.1 |
| N1 |
C8A |
N8 |
119.7 |
121.9 |
| N1 |
C8A |
C4A |
120.4 |
118.7 |
| O1 |
CT |
O2 |
118.6 |
120.0 |
| O1 |
CT |
CA |
120.9 |
120.0 |
| C2 |
N3 |
C4 |
120.5 |
121.3 |
| CT |
O2 |
HO2 |
109.5 |
117.0 |
| N3 |
C4 |
NA4 |
120.2 |
121.1 |
| N3 |
C4 |
C4A |
119.6 |
117.7 |
| C4A |
C4 |
NA4 |
120.2 |
121.2 |
| C4 |
NA4 |
HNA4 |
109.5 |
120.0 |
| C4 |
NA4 |
HNAB |
109.5 |
120.0 |
| C4 |
C4A |
N5 |
120.1 |
122.1 |
| N5 |
C6 |
C9 |
119.8 |
119.7 |
| C7 |
C6 |
C9 |
120.4 |
119.7 |
| C6 |
C9 |
N10 |
111.6 |
109.5 |
| C6 |
C9 |
H9 |
109.0 |
109.5 |
| C6 |
C9 |
H9A |
108.9 |
109.5 |
| N8 |
C7 |
H7 |
119.8 |
119.6 |
| N10 |
C9 |
H9 |
108.9 |
109.5 |
| N10 |
C9 |
H9A |
109.0 |
109.4 |
| C9 |
N10 |
C14 |
124.1 |
120.0 |
| C9 |
N10 |
HN10 |
105.7 |
120.0 |
| H9 |
C9 |
H9A |
109.5 |
109.5 |
| CB |
CA |
CT |
110.7 |
109.5 |
| CB |
CA |
HA |
107.5 |
109.4 |
| CT |
CA |
HA |
107.8 |
109.4 |
| CG |
CB |
HB |
109.0 |
109.5 |
| CG |
CB |
HBA |
109.0 |
109.5 |
| CB |
CG |
CD |
110.9 |
109.4 |
| CB |
CG |
HG |
109.1 |
109.5 |
| CB |
CG |
HGA |
109.1 |
109.5 |
| HB |
CB |
HBA |
109.5 |
109.5 |
| OE1 |
CD |
OE2 |
119.0 |
120.0 |
| CG |
CD |
OE2 |
120.6 |
120.0 |
| CD |
CG |
HG |
109.1 |
109.5 |
| CD |
CG |
HGA |
109.1 |
109.5 |
| CD |
OE2 |
HOE2 |
109.5 |
117.0 |
| HG |
CG |
HGA |
109.5 |
109.5 |
| C14 |
N10 |
HN10 |
105.7 |
120.0 |
| N10 |
C14 |
C13 |
118.0 |
119.9 |
| N10 |
C14 |
C15 |
122.2 |
119.9 |
| C13 |
C12 |
H12 |
119.9 |
120.0 |
| C14 |
C13 |
H13 |
119.8 |
120.0 |
| C14 |
C15 |
C16 |
120.1 |
120.1 |
| C14 |
C15 |
H15 |
119.9 |
119.9 |
| C16 |
C15 |
H15 |
120.0 |
120.0 |
| C15 |
C16 |
H16 |
120.1 |
120.0 |
| HNA2 |
NA2 |
HNAA |
109.5 |
120.0 |
| HNA4 |
NA4 |
HNAB |
109.5 |
120.0 |
Torsion Angles for 04J
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
C |
O |
2.9 |
0.0 |
| O1 |
CT |
CA |
N |
206.0 |
360.0 |
| CB |
CA |
N |
CT |
236.3 |
240.0 |
| CB |
CA |
N |
HA |
117.3 |
120.0 |
| CT |
CA |
N |
HA |
241.0 |
240.0 |
| HN |
N |
C |
O |
182.9 |
180.0 |
| HN |
N |
CA |
CT |
49.4 |
95.0 |
| HN |
N |
CA |
HA |
168.4 |
215.0 |
| C2 |
N1 |
C8A |
N8 |
180.3 |
180.1 |
| C2 |
N1 |
C8A |
C4A |
0.2 |
0.0 |
| N |
CA |
CT |
O1 |
206.0 |
360.0 |
| O1 |
CT |
O2 |
HO2 |
0.0 |
0.1 |
| CB |
CA |
CT |
O1 |
329.2 |
120.0 |
| O1 |
CT |
CA |
HA |
86.6 |
239.9 |
| N3 |
C2 |
N1 |
C8A |
359.8 |
360.0 |
| C2 |
N3 |
C4 |
NA4 |
180.1 |
179.9 |
| C2 |
N3 |
C4 |
C4A |
0.4 |
360.0 |
| N |
CA |
CT |
O2 |
25.8 |
180.1 |
| O1 |
CT |
O2 |
CA |
179.8 |
180.1 |
| C4A |
C4 |
N3 |
NA4 |
180.4 |
180.1 |
| N3 |
C4 |
NA4 |
HNA4 |
360.0 |
0.0 |
| N3 |
C4 |
NA4 |
HNAB |
120.0 |
180.0 |
| N3 |
C4 |
C4A |
N5 |
179.5 |
180.0 |
| N3 |
C4 |
NA4 |
C4A |
180.4 |
180.1 |
| NA4 |
C4 |
C4A |
N5 |
359.9 |
0.1 |
| HNA4 |
NA4 |
C4 |
HNAB |
240.0 |
180.0 |
| N1 |
C8A |
C4A |
C4 |
0.2 |
360.0 |
| N3 |
C4 |
C4A |
NA4 |
179.6 |
179.9 |
| C4A |
C4 |
NA4 |
HNA4 |
179.6 |
180.0 |
| C4A |
C4 |
NA4 |
HNAB |
299.6 |
359.9 |
| N1 |
C8A |
C4A |
N5 |
180.2 |
180.0 |
| N5 |
C4A |
C4 |
NA4 |
359.9 |
0.1 |
| C4 |
C4A |
N5 |
C6 |
179.9 |
179.9 |
| C7 |
C6 |
N5 |
C9 |
180.0 |
180.1 |
| N5 |
C6 |
C9 |
N10 |
150.1 |
275.0 |
| N5 |
C6 |
C9 |
H9 |
270.4 |
35.0 |
| N5 |
C6 |
C9 |
H9A |
29.7 |
155.0 |
| N5 |
C6 |
C7 |
C9 |
180.0 |
179.9 |
| C7 |
C6 |
C9 |
N10 |
330.1 |
94.9 |
| C7 |
C6 |
C9 |
H9 |
90.4 |
214.9 |
| C7 |
C6 |
C9 |
H9A |
209.7 |
335.0 |
| N10 |
C9 |
C6 |
H9 |
239.7 |
240.0 |
| N10 |
C9 |
C6 |
H9A |
120.3 |
120.0 |
| C6 |
C9 |
N10 |
C14 |
81.3 |
180.0 |
| C6 |
C9 |
N10 |
HN10 |
203.2 |
0.0 |
| H9 |
C9 |
C6 |
H9A |
240.7 |
240.0 |
| N1 |
C8A |
N8 |
C7 |
180.1 |
180.1 |
| N8 |
C7 |
C6 |
C9 |
180.3 |
180.1 |
| H7 |
C7 |
C6 |
C9 |
0.3 |
0.0 |
| N1 |
C8A |
N8 |
C4A |
179.9 |
180.0 |
| C8A |
N8 |
C7 |
H7 |
179.6 |
179.9 |
| C6 |
C9 |
N10 |
H9 |
120.3 |
120.0 |
| C6 |
C9 |
N10 |
H9A |
239.7 |
240.0 |
| H9 |
C9 |
N10 |
H9A |
119.3 |
120.0 |
| C14 |
N10 |
C9 |
HN10 |
238.0 |
179.9 |
| C9 |
N10 |
C14 |
C13 |
193.3 |
180.0 |
| C9 |
N10 |
C14 |
C15 |
14.0 |
0.0 |
| C6 |
C9 |
H9 |
N10 |
238.0 |
240.0 |
| C6 |
C9 |
H9 |
H9A |
119.0 |
120.1 |
| N10 |
C9 |
H9 |
H9A |
241.0 |
240.1 |
| H9 |
C9 |
N10 |
C14 |
320.9 |
59.9 |
| H9 |
C9 |
N10 |
HN10 |
82.9 |
240.0 |
| C6 |
C9 |
H9A |
N10 |
122.0 |
120.0 |
| C6 |
C9 |
H9A |
H9 |
241.0 |
239.9 |
| N10 |
C9 |
H9A |
H9 |
119.0 |
120.0 |
| H9A |
C9 |
N10 |
C14 |
201.6 |
300.0 |
| H9A |
C9 |
N10 |
HN10 |
323.5 |
120.0 |
| CB |
CA |
N |
HN |
285.8 |
335.0 |
| N |
CA |
CB |
CT |
124.5 |
120.0 |
| N |
CA |
CB |
HA |
242.1 |
239.9 |
| O1 |
CT |
CA |
CB |
329.2 |
120.0 |
| CT |
CA |
CB |
HA |
117.6 |
120.0 |
| CT |
CA |
N |
HN |
49.4 |
95.0 |
| N |
CA |
CT |
HA |
119.4 |
120.1 |
| O1 |
CT |
CA |
O2 |
180.2 |
179.9 |
| CA |
CT |
O2 |
HO2 |
180.2 |
180.0 |
| CB |
CA |
CT |
HA |
242.6 |
240.0 |
| HA |
CA |
N |
HN |
168.4 |
215.0 |
| N |
CA |
HA |
CT |
238.3 |
240.0 |
| CB |
CA |
HA |
CT |
119.4 |
120.0 |
| CG |
CB |
CA |
CT |
103.6 |
175.0 |
| CG |
CB |
CA |
HA |
346.1 |
55.0 |
| HB |
CB |
CG |
HBA |
119.5 |
120.0 |
| CB |
CG |
CD |
OE2 |
246.7 |
180.0 |
| CD |
CG |
CB |
HG |
239.8 |
240.0 |
| CD |
CG |
CB |
HGA |
120.2 |
120.0 |
| HG |
CG |
CB |
HGA |
240.4 |
240.0 |
| HB |
CB |
CA |
CT |
223.9 |
295.0 |
| HB |
CB |
CA |
HA |
106.3 |
175.1 |
| CG |
CB |
HB |
HBA |
240.8 |
239.9 |
| HB |
CB |
CG |
CD |
329.7 |
60.0 |
| HB |
CB |
CG |
HG |
90.0 |
180.0 |
| HB |
CB |
CG |
HGA |
209.5 |
300.0 |
| HBA |
CB |
CA |
CT |
343.4 |
55.0 |
| HBA |
CB |
CA |
HA |
225.8 |
295.0 |
| CG |
CB |
HBA |
HB |
119.2 |
120.1 |
| HBA |
CB |
CG |
CD |
210.3 |
300.0 |
| HBA |
CB |
CG |
HG |
330.5 |
60.0 |
| HBA |
CB |
CG |
HGA |
90.1 |
180.0 |
| CG |
CD |
OE1 |
OE2 |
180.3 |
180.1 |
| OE1 |
CD |
CG |
HG |
306.2 |
240.0 |
| OE1 |
CD |
CG |
HGA |
186.7 |
119.9 |
| OE1 |
CD |
OE2 |
HOE2 |
360.0 |
0.1 |
| CD |
CG |
CB |
HB |
329.7 |
60.0 |
| CD |
CG |
CB |
HBA |
210.3 |
300.0 |
| CB |
CG |
CD |
HG |
120.2 |
120.0 |
| CB |
CG |
CD |
HGA |
239.8 |
240.0 |
| OE1 |
CD |
CG |
OE2 |
179.7 |
179.9 |
| CG |
CD |
OE2 |
HOE2 |
179.7 |
180.0 |
| HG |
CG |
CD |
HGA |
119.6 |
120.0 |
| OE2 |
CD |
CG |
HG |
126.5 |
60.0 |
| OE2 |
CD |
CG |
HGA |
7.0 |
300.0 |
| HG |
CG |
CB |
HB |
90.0 |
180.0 |
| HG |
CG |
CB |
HBA |
330.5 |
60.0 |
| CB |
CG |
HG |
CD |
238.7 |
240.0 |
| CB |
CG |
HG |
HGA |
119.3 |
120.0 |
| HG |
CG |
CD |
OE2 |
126.5 |
60.0 |
| CD |
CG |
HG |
HGA |
240.7 |
240.0 |
| HGA |
CG |
CB |
HB |
209.5 |
300.0 |
| HGA |
CG |
CB |
HBA |
90.1 |
180.0 |
| CB |
CG |
HGA |
CD |
121.3 |
120.0 |
| CB |
CG |
HGA |
HG |
240.7 |
240.0 |
| HGA |
CG |
CD |
OE2 |
7.0 |
300.0 |
| CD |
CG |
HGA |
HG |
119.3 |
120.0 |
| C14 |
N10 |
C9 |
H9 |
320.9 |
59.9 |
| C14 |
N10 |
C9 |
H9A |
201.6 |
300.0 |
| C9 |
N10 |
C14 |
HN10 |
122.0 |
180.1 |
| N10 |
C14 |
C13 |
H13 |
0.0 |
0.1 |
| N10 |
C14 |
C15 |
C16 |
179.9 |
179.7 |
| N10 |
C14 |
C15 |
H15 |
359.9 |
359.9 |
| HN10 |
N10 |
C9 |
H9 |
82.9 |
240.0 |
| HN10 |
N10 |
C9 |
H9A |
323.5 |
120.0 |
| C9 |
N10 |
HN10 |
C14 |
226.9 |
179.9 |
| HN10 |
N10 |
C14 |
C13 |
71.3 |
359.9 |
| HN10 |
N10 |
C14 |
C15 |
252.0 |
180.0 |
| N10 |
C14 |
C13 |
C12 |
180.0 |
180.0 |
| C13 |
C14 |
N10 |
HN10 |
71.3 |
359.9 |
| N10 |
C14 |
C13 |
C15 |
180.6 |
180.1 |
| C14 |
C13 |
C12 |
H12 |
180.4 |
180.1 |
| H13 |
C13 |
C12 |
H12 |
0.3 |
0.0 |
| C15 |
C14 |
N10 |
HN10 |
252.0 |
180.0 |
| N10 |
C14 |
C15 |
C13 |
179.3 |
179.9 |
| C15 |
C14 |
C13 |
H13 |
179.4 |
180.0 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
179.7 |
| C14 |
C15 |
C16 |
H16 |
179.7 |
179.9 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.3 |
| C14 |
C15 |
H15 |
C16 |
180.0 |
179.7 |
| H15 |
C15 |
C16 |
H16 |
359.8 |
359.7 |
| H16 |
C16 |
C15 |
H15 |
359.8 |
359.7 |
| N1 |
C8A |
C4A |
N8 |
180.1 |
180.0 |
| C8A |
C4A |
C4 |
NA4 |
179.9 |
180.1 |
| C4 |
NA4 |
HNA4 |
HNAB |
120.0 |
180.0 |
| C4 |
NA4 |
HNAB |
HNA4 |
239.9 |
180.0 |