PDB Chemical Component 046
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 046
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C22 |
C25 |
1.514 |
1.512 |
| C22 |
C19 |
1.543 |
1.538 |
| C32 |
C25 |
1.372 |
1.381 |
| C32 |
C31 |
1.390 |
1.386 |
| C25 |
C26 |
1.386 |
1.386 |
| O34 |
C31 |
1.384 |
1.361 |
| O34 |
C35 |
1.360 |
1.355 |
| C19 |
N18 |
1.464 |
1.466 |
| O46 |
C45 |
1.194 |
1.213 |
| C31 |
C29 |
1.394 |
1.387 |
| C41 |
C35 |
1.396 |
1.390 |
| C41 |
C40 |
1.387 |
1.392 |
| C35 |
N36 |
1.333 |
1.330 |
| C45 |
C47 |
1.513 |
1.507 |
| C45 |
N43 |
1.347 |
1.348 |
| C40 |
N43 |
1.426 |
1.391 |
| C40 |
N39 |
1.334 |
1.331 |
| C26 |
N18 |
1.404 |
1.401 |
| C26 |
C27 |
1.404 |
1.395 |
| N36 |
C37 |
1.337 |
1.318 |
| N18 |
C16 |
1.345 |
1.348 |
| C29 |
C27 |
1.403 |
1.379 |
| N39 |
C37 |
1.348 |
1.318 |
| N14 |
C16 |
1.353 |
1.348 |
| N14 |
C11 |
1.422 |
1.399 |
| C16 |
O17 |
1.230 |
1.215 |
| C9 |
C11 |
1.389 |
1.388 |
| C9 |
C7 |
1.401 |
1.381 |
| C11 |
C12 |
1.394 |
1.389 |
| C7 |
C6 |
1.402 |
1.384 |
| C12 |
C5 |
1.389 |
1.381 |
| C6 |
C5 |
1.395 |
1.382 |
| C6 |
C51 |
1.544 |
1.507 |
| C62 |
C65 |
1.535 |
1.531 |
| C62 |
N61 |
1.485 |
1.470 |
| C5 |
C2 |
1.513 |
1.508 |
| C68 |
N61 |
1.486 |
1.469 |
| C65 |
N54 |
1.462 |
1.469 |
| N54 |
C51 |
1.464 |
1.469 |
| N54 |
C55 |
1.468 |
1.470 |
| N61 |
C58 |
1.469 |
1.469 |
| C58 |
C55 |
1.546 |
1.531 |
| C2 |
F4 |
1.328 |
1.399 |
| C2 |
F3 |
1.343 |
1.399 |
| C2 |
F1 |
1.351 |
1.399 |
| C7 |
H1 |
1.080 |
1.079 |
| C9 |
H2 |
1.080 |
1.080 |
| C12 |
H3 |
1.081 |
1.081 |
| N14 |
H4 |
1.000 |
0.970 |
| C19 |
H5 |
1.100 |
1.089 |
| C22 |
H6 |
1.100 |
1.090 |
| C27 |
H7 |
1.080 |
1.080 |
| C29 |
H8 |
1.080 |
1.080 |
| C32 |
H9 |
1.080 |
1.080 |
| C37 |
H10 |
1.080 |
1.080 |
| C41 |
H11 |
1.080 |
1.080 |
| N43 |
H12 |
1.000 |
0.970 |
| C47 |
H13 |
1.100 |
1.091 |
| C47 |
H14 |
1.100 |
1.090 |
| C47 |
H15 |
1.100 |
1.089 |
| C51 |
H16 |
1.100 |
1.090 |
| C51 |
H17 |
1.100 |
1.090 |
| C55 |
H19 |
1.100 |
1.090 |
| C55 |
H20 |
1.100 |
1.089 |
| C58 |
H21 |
1.100 |
1.091 |
| C58 |
H22 |
1.100 |
1.090 |
| C62 |
H24 |
1.100 |
1.090 |
| C62 |
H25 |
1.100 |
1.089 |
| C65 |
H26 |
1.100 |
1.090 |
| C65 |
H27 |
1.100 |
1.089 |
| C68 |
H28 |
1.100 |
1.090 |
| C68 |
H29 |
1.100 |
1.090 |
| C68 |
H30 |
1.100 |
1.090 |
| C19 |
H31 |
1.100 |
1.089 |
| C22 |
H32 |
1.100 |
1.090 |
Bond Angles for 046
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C22 |
C25 |
C26 |
108.7 |
108.6 |
| C25 |
C22 |
H6 |
110.6 |
110.4 |
| C25 |
C22 |
H32 |
110.7 |
110.5 |
| C22 |
C19 |
H5 |
110.6 |
110.3 |
| C22 |
C19 |
H31 |
110.6 |
110.4 |
| C25 |
C26 |
C27 |
122.0 |
119.1 |
| O34 |
C35 |
N36 |
122.0 |
120.5 |
| O46 |
C45 |
C47 |
119.7 |
120.0 |
| C31 |
C29 |
H8 |
119.8 |
120.0 |
| C41 |
C40 |
N43 |
125.3 |
120.5 |
| C35 |
N36 |
C37 |
121.9 |
120.9 |
| C45 |
C47 |
H13 |
109.5 |
109.4 |
| C45 |
C47 |
H14 |
109.4 |
109.4 |
| C45 |
C47 |
H15 |
109.4 |
109.5 |
| C45 |
N43 |
H12 |
117.6 |
120.0 |
| C40 |
N43 |
H12 |
117.6 |
120.0 |
| C26 |
C27 |
H7 |
121.7 |
119.9 |
| N36 |
C37 |
H10 |
120.6 |
119.0 |
| C29 |
C27 |
H7 |
121.7 |
119.8 |
| N39 |
C37 |
H10 |
120.6 |
119.1 |
| N14 |
C16 |
O17 |
124.3 |
120.0 |
| C16 |
N14 |
H4 |
117.5 |
120.0 |
| C9 |
C11 |
C12 |
120.2 |
119.8 |
| C11 |
C9 |
H2 |
120.5 |
120.0 |
| C9 |
C7 |
H1 |
119.2 |
120.0 |
| C11 |
C12 |
H3 |
120.0 |
120.1 |
| C7 |
C6 |
C51 |
119.5 |
119.9 |
| C6 |
C51 |
H16 |
109.2 |
109.5 |
| C6 |
C51 |
H17 |
109.2 |
109.4 |
| C65 |
C62 |
H24 |
110.0 |
109.5 |
| C65 |
C62 |
H25 |
110.0 |
109.5 |
| C62 |
C65 |
H26 |
109.1 |
109.4 |
| C62 |
C65 |
H27 |
109.1 |
109.5 |
| N54 |
C51 |
H16 |
109.2 |
109.5 |
| N54 |
C51 |
H17 |
109.2 |
109.5 |
| N54 |
C55 |
H19 |
109.5 |
109.5 |
| N54 |
C55 |
H20 |
109.5 |
109.5 |
| N61 |
C58 |
H21 |
109.3 |
109.4 |
| N61 |
C58 |
H22 |
109.3 |
109.6 |
| C58 |
C55 |
H19 |
109.5 |
109.5 |
| C58 |
C55 |
H20 |
109.5 |
109.5 |
| F3 |
C2 |
F4 |
107.2 |
109.5 |
| H5 |
C19 |
H31 |
109.5 |
110.3 |
| H6 |
C22 |
H32 |
109.4 |
110.5 |
| H13 |
C47 |
H14 |
109.5 |
109.4 |
| H13 |
C47 |
H15 |
109.5 |
109.5 |
| H14 |
C47 |
H15 |
109.5 |
109.6 |
| H16 |
C51 |
H17 |
109.5 |
109.5 |
| H19 |
C55 |
H20 |
109.5 |
109.6 |
| H21 |
C58 |
H22 |
109.5 |
109.5 |
| H24 |
C62 |
H25 |
109.4 |
109.5 |
| H26 |
C65 |
H27 |
109.5 |
109.5 |
| H28 |
C68 |
H29 |
109.4 |
109.5 |
| H28 |
C68 |
H30 |
109.5 |
109.4 |
| H29 |
C68 |
H30 |
109.5 |
109.5 |
Torsion Angles for 046
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C25 |
C22 |
C19 |
H5 |
119.3 |
241.1 |
| C25 |
C22 |
C19 |
H31 |
240.9 |
119.0 |
| C22 |
C25 |
C26 |
C27 |
178.9 |
180.0 |
| H6 |
C22 |
C25 |
H32 |
238.5 |
122.5 |
| H5 |
C19 |
C22 |
H31 |
238.5 |
122.2 |
| C32 |
C25 |
C22 |
H6 |
297.5 |
61.5 |
| C32 |
C25 |
C22 |
H32 |
59.0 |
299.0 |
| C32 |
C31 |
C29 |
H8 |
179.1 |
180.2 |
| C26 |
C25 |
C22 |
H6 |
118.1 |
241.2 |
| C26 |
C25 |
C22 |
H32 |
239.6 |
118.7 |
| C25 |
C26 |
C27 |
H7 |
180.7 |
180.1 |
| O34 |
C31 |
C29 |
H8 |
0.3 |
360.0 |
| O34 |
C35 |
N36 |
C37 |
181.5 |
180.0 |
| O46 |
C45 |
C47 |
H13 |
360.0 |
240.0 |
| O46 |
C45 |
C47 |
H14 |
120.0 |
359.9 |
| O46 |
C45 |
C47 |
H15 |
240.0 |
120.0 |
| O46 |
C45 |
N43 |
H12 |
181.6 |
186.4 |
| C31 |
C29 |
C27 |
H7 |
180.0 |
180.0 |
| C41 |
C40 |
N43 |
H12 |
181.0 |
6.6 |
| C35 |
N36 |
C37 |
H10 |
178.8 |
180.0 |
| C47 |
C45 |
N43 |
H12 |
0.1 |
6.5 |
| H13 |
C47 |
C45 |
H14 |
240.0 |
240.1 |
| H13 |
C47 |
C45 |
H15 |
120.0 |
120.0 |
| H14 |
C47 |
C45 |
H15 |
240.0 |
239.9 |
| C40 |
N43 |
C45 |
H12 |
180.0 |
180.0 |
| C45 |
N43 |
C40 |
H12 |
180.0 |
180.0 |
| C40 |
N39 |
C37 |
H10 |
178.6 |
180.0 |
| C29 |
C27 |
C26 |
H7 |
180.0 |
180.0 |
| N39 |
C37 |
N36 |
H10 |
180.0 |
180.1 |
| N18 |
C16 |
N14 |
H4 |
1.8 |
9.3 |
| C26 |
C27 |
C29 |
H7 |
180.0 |
180.0 |
| N36 |
C37 |
N39 |
H10 |
180.0 |
179.9 |
| N14 |
C11 |
C9 |
H2 |
1.2 |
0.3 |
| N14 |
C11 |
C12 |
H3 |
0.6 |
359.8 |
| O17 |
C16 |
N14 |
H4 |
178.0 |
189.3 |
| C11 |
C9 |
C7 |
H1 |
180.3 |
180.0 |
| C9 |
C11 |
C12 |
H3 |
183.3 |
180.0 |
| C9 |
C7 |
C6 |
C51 |
182.5 |
180.0 |
| C12 |
C11 |
C9 |
H2 |
178.7 |
180.1 |
| C7 |
C6 |
C51 |
H16 |
141.3 |
20.0 |
| C7 |
C6 |
C51 |
H17 |
261.0 |
140.0 |
| N54 |
C51 |
C6 |
H16 |
239.8 |
240.0 |
| N54 |
C51 |
C6 |
H17 |
120.2 |
120.0 |
| H16 |
C51 |
C6 |
H17 |
240.4 |
240.0 |
| H24 |
C62 |
C65 |
H25 |
239.4 |
120.1 |
| H26 |
C65 |
C62 |
H27 |
240.5 |
120.0 |
| C62 |
N61 |
C58 |
H21 |
61.2 |
180.7 |
| C62 |
N61 |
C58 |
H22 |
180.9 |
60.7 |
| C68 |
N61 |
C58 |
H21 |
299.4 |
56.9 |
| C68 |
N61 |
C58 |
H22 |
59.2 |
296.8 |
| C65 |
N54 |
C51 |
H16 |
313.0 |
306.3 |
| C65 |
N54 |
C51 |
H17 |
193.3 |
186.2 |
| C65 |
N54 |
C55 |
H19 |
62.2 |
60.6 |
| C65 |
N54 |
C55 |
H20 |
182.3 |
180.7 |
| C6 |
C51 |
N54 |
H16 |
120.2 |
120.0 |
| C6 |
C51 |
N54 |
H17 |
239.8 |
240.1 |
| H16 |
C51 |
N54 |
H17 |
119.6 |
120.1 |
| C55 |
N54 |
C51 |
H16 |
75.9 |
70.0 |
| C55 |
N54 |
C51 |
H17 |
316.3 |
310.0 |
| C58 |
C55 |
N54 |
H19 |
240.0 |
240.1 |
| C58 |
C55 |
N54 |
H20 |
120.0 |
120.0 |
| H19 |
C55 |
N54 |
H20 |
239.9 |
239.9 |
| N61 |
C58 |
C55 |
H19 |
297.1 |
298.5 |
| N61 |
C58 |
C55 |
H20 |
177.0 |
178.4 |
| H21 |
C58 |
N61 |
H22 |
240.2 |
120.0 |
| N54 |
C55 |
C58 |
H19 |
120.0 |
119.9 |
| N54 |
C55 |
C58 |
H20 |
240.0 |
240.0 |
| H19 |
C55 |
C58 |
H20 |
120.1 |
120.1 |
| H1 |
C7 |
C6 |
C51 |
2.5 |
360.0 |
| H2 |
C9 |
C11 |
C12 |
178.7 |
180.1 |
| H2 |
C9 |
C7 |
H1 |
0.3 |
359.7 |
| H4 |
N14 |
C16 |
O17 |
178.0 |
189.3 |
| C22 |
C19 |
H5 |
H31 |
122.2 |
237.8 |
| H6 |
C22 |
C25 |
C26 |
118.1 |
241.2 |
| C25 |
C22 |
H6 |
H32 |
122.2 |
237.5 |
| H6 |
C22 |
C19 |
H5 |
0.1 |
359.8 |
| H6 |
C22 |
C19 |
H31 |
121.6 |
237.6 |
| H8 |
C29 |
C27 |
H7 |
0.0 |
360.0 |
| H11 |
C41 |
C40 |
N43 |
357.0 |
0.1 |
| C45 |
C47 |
H13 |
H14 |
120.0 |
119.9 |
| C45 |
C47 |
H13 |
H15 |
240.0 |
240.0 |
| H14 |
C47 |
H13 |
H15 |
120.0 |
120.1 |
| C45 |
C47 |
H14 |
H13 |
240.0 |
240.1 |
| C45 |
C47 |
H14 |
H15 |
120.0 |
120.1 |
| H13 |
C47 |
H14 |
H15 |
240.0 |
239.9 |
| C45 |
C47 |
H15 |
H13 |
120.0 |
120.0 |
| C45 |
C47 |
H15 |
H14 |
240.0 |
240.0 |
| H13 |
C47 |
H15 |
H14 |
120.0 |
120.0 |
| C6 |
C51 |
H16 |
H17 |
119.5 |
119.9 |
| N54 |
C51 |
H16 |
H17 |
240.6 |
239.9 |
| C6 |
C51 |
H17 |
H16 |
240.5 |
240.0 |
| N54 |
C51 |
H17 |
H16 |
119.4 |
120.1 |
| N54 |
C55 |
H19 |
H20 |
120.1 |
120.1 |
| C58 |
C55 |
H19 |
H20 |
239.9 |
239.9 |
| N54 |
C55 |
H20 |
H19 |
239.9 |
239.9 |
| C58 |
C55 |
H20 |
H19 |
120.1 |
120.1 |
| N61 |
C58 |
H21 |
H22 |
119.6 |
239.9 |
| H21 |
C58 |
C55 |
H19 |
177.0 |
58.4 |
| H21 |
C58 |
C55 |
H20 |
56.9 |
298.3 |
| N61 |
C58 |
H22 |
H21 |
240.4 |
120.0 |
| H22 |
C58 |
C55 |
H19 |
57.2 |
178.4 |
| H22 |
C58 |
C55 |
H20 |
297.1 |
58.3 |
| C65 |
C62 |
H24 |
H25 |
120.9 |
239.9 |
| H24 |
C62 |
C65 |
H26 |
180.3 |
61.7 |
| H24 |
C62 |
C65 |
H27 |
299.8 |
301.7 |
| C65 |
C62 |
H25 |
H24 |
239.1 |
120.1 |
| H25 |
C62 |
C65 |
H26 |
300.9 |
301.5 |
| H25 |
C62 |
C65 |
H27 |
60.4 |
181.5 |
| H26 |
C65 |
C62 |
H24 |
180.3 |
61.7 |
| H26 |
C65 |
C62 |
H25 |
300.9 |
301.5 |
| C62 |
C65 |
H26 |
H27 |
119.3 |
240.0 |
| H27 |
C65 |
C62 |
H24 |
299.8 |
301.7 |
| H27 |
C65 |
C62 |
H25 |
60.4 |
181.5 |
| C62 |
C65 |
H27 |
H26 |
240.8 |
120.0 |
| H29 |
C68 |
H28 |
H30 |
120.0 |
120.0 |
| H28 |
C68 |
H29 |
H30 |
240.0 |
240.0 |
| H28 |
C68 |
H30 |
H29 |
119.9 |
120.0 |
| C22 |
C19 |
H31 |
H5 |
237.8 |
122.1 |
| H32 |
C22 |
C25 |
C26 |
239.6 |
118.7 |
| C25 |
C22 |
H32 |
H6 |
237.8 |
122.4 |
| H32 |
C22 |
C19 |
H5 |
238.6 |
122.2 |
| H32 |
C22 |
C19 |
H31 |
0.1 |
0.0 |