PDB Chemical Component 042

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 042

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C10	C11	1.533	1.530
C10	O3	1.455	1.451
C10	H101	1.101	1.090
C10	H102	1.100	1.090
C11	H111	1.100	1.090
C11	H112	1.100	1.089
C11	H113	1.100	1.091
C3	C2	1.542	1.530
C3	O1	2.410	1.431
C3	C4	1.523	1.507
C3	H3	1.100	1.090
C2	O1	1.432	1.429
C2	C9	1.545	1.507
C2	H2	1.100	1.090
C4	O4	1.234	1.213
C4	N1	1.339	1.347
N1	C5	1.499	1.465
N1	HN1	1.000	0.970
C5	C6	1.561	1.507
C5	C12	1.577	1.530
C5	H5	1.100	1.090
C6	O5	1.236	1.212
C6	N2	1.342	1.348
C12	O8	1.428	1.429
C12	C13	1.541	1.530
C12	H12	1.100	1.090
O8	HO8	0.950	0.967
C13	H131	1.100	1.090
C13	H132	1.100	1.090
C13	H133	1.100	1.091
N2	C7	1.486	1.464
N2	HN2	0.999	0.970
C7	C8	1.551	1.507
C7	C14	1.584	1.531
C7	H7	1.100	1.090
C8	O7	1.222	1.342
C8	O6	1.364	1.208
O7	HO7	0.950	0.968
C14	C16	1.567	1.529
C14	C15	1.552	1.530
C14	H14	1.099	1.090
C16	C17	1.544	1.529
C16	H161	1.101	1.089
C16	H162	1.100	1.090
C15	H151	1.100	1.090
C15	H152	1.100	1.090
C15	H153	1.100	1.089
C17	H171	1.100	1.090
C17	H172	1.100	1.090
C17	H173	1.099	1.091
C9	O2	1.228	1.208
C9	O3	1.397	1.343

Bond Angles for 042

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C11	C10	O3	108.8	109.5
C11	C10	H101	109.9	109.5
C11	C10	H102	109.7	109.5
C10	C11	H111	109.4	109.4
C10	C11	H112	109.5	109.5
C10	C11	H113	109.5	109.5
O3	C10	H101	109.8	109.5
O3	C10	H102	109.7	109.5
C10	O3	C9	118.9	120.0
H101	C10	H102	108.9	109.4
H111	C11	H112	109.5	109.5
H111	C11	H113	109.5	109.5
H112	C11	H113	109.4	109.5
C2	C3	O1	34.4	57.6
C2	C3	C4	114.5	117.8
C2	C3	H3	137.5	117.8
C3	C2	O1	108.2	57.7
C3	C2	C9	111.9	117.8
C3	C2	H2	109.0	117.8
O1	C3	C4	94.6	117.8
O1	C3	H3	155.8	117.7
C3	O1	C2	37.4	64.7
C4	C3	H3	105.3	115.7
C3	C4	O4	119.4	120.0
C3	C4	N1	117.0	120.0
O1	C2	C9	110.4	117.8
O1	C2	H2	110.6	117.8
C9	C2	H2	106.8	115.7
C2	C9	O2	121.3	120.0
C2	C9	O3	112.7	120.0
O4	C4	N1	123.6	120.0
C4	N1	C5	121.9	120.0
C4	N1	HN1	119.0	120.0
C5	N1	HN1	119.0	120.0
N1	C5	C6	111.0	109.5
N1	C5	C12	108.4	109.5
N1	C5	H5	110.2	109.5
C6	C5	C12	112.4	109.5
C6	C5	H5	106.0	109.5
C5	C6	O5	122.1	120.0
C5	C6	N2	115.8	120.0
C12	C5	H5	108.8	109.5
C5	C12	O8	111.5	109.5
C5	C12	C13	114.9	109.5
C5	C12	H12	102.7	109.5
O5	C6	N2	122.1	120.0
C6	N2	C7	124.4	120.0
C6	N2	HN2	117.8	120.0
O8	C12	C13	104.6	109.4
O8	C12	H12	113.4	109.5
C12	O8	HO8	109.5	106.8
C13	C12	H12	109.9	109.5
C12	C13	H131	109.5	109.5
C12	C13	H132	109.5	109.5
C12	C13	H133	109.5	109.4
H131	C13	H132	109.5	109.5
H131	C13	H133	109.4	109.5
H132	C13	H133	109.5	109.4
C7	N2	HN2	117.8	120.0
N2	C7	C8	105.0	109.5
N2	C7	C14	108.8	109.5
N2	C7	H7	114.7	109.5
C8	C7	C14	114.7	109.4
C8	C7	H7	108.8	109.5
C7	C8	O7	124.0	120.0
C7	C8	O6	113.6	120.0
C14	C7	H7	105.1	109.4
C7	C14	C16	113.5	109.5
C7	C14	C15	111.9	109.5
C7	C14	H14	104.1	109.4
O7	C8	O6	122.4	120.0
C8	O7	HO7	109.5	120.0
C16	C14	C15	106.8	109.5
C16	C14	H14	109.4	109.5
C14	C16	C17	115.7	109.5
C14	C16	H161	106.0	109.5
C14	C16	H162	107.4	109.4
C15	C14	H14	111.2	109.4
C14	C15	H151	109.4	109.4
C14	C15	H152	109.5	109.5
C14	C15	H153	109.5	109.5
C17	C16	H161	106.0	109.5
C17	C16	H162	107.4	109.5
C16	C17	H171	109.5	109.5
C16	C17	H172	109.4	109.5
C16	C17	H173	109.5	109.5
H161	C16	H162	114.5	109.5
H151	C15	H152	109.5	109.5
H151	C15	H153	109.4	109.5
H152	C15	H153	109.5	109.4
H171	C17	H172	109.5	109.5
H171	C17	H173	109.5	109.5
H172	C17	H173	109.5	109.4
O2	C9	O3	126.0	120.0

Torsion Angles for 042

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O3	C10	C11	H101	120.3	240.0
O3	C10	C11	H102	240.0	120.1
C11	C10	O3	C9	97.6	180.0
H101	C10	C11	H102	119.7	240.1
H111	C11	C10	H112	120.0	239.9
H111	C11	C10	H113	240.0	120.0
H112	C11	C10	H113	120.0	240.0
C11	C10	O3	H101	239.7	120.0
C11	C10	O3	H102	120.0	240.0
O3	C10	C11	H111	357.4	300.0
O3	C10	C11	H112	237.3	60.0
O3	C10	C11	H113	117.4	180.0
H101	C10	O3	H102	240.3	120.0
C2	C9	O3	C10	181.9	180.0
O2	C9	O3	C10	1.5	0.0
C11	C10	H101	O3	119.6	240.0
C11	C10	H101	H102	239.8	119.9
H101	C10	C11	H111	237.1	60.0
H101	C10	C11	H112	117.1	180.1
H101	C10	C11	H113	357.1	300.0
O3	C10	H101	H102	120.2	239.9
H101	C10	O3	C9	217.9	60.0
C11	C10	H102	O3	240.5	120.0
C11	C10	H102	H101	120.3	240.1
H102	C10	C11	H111	117.4	179.9
H102	C10	C11	H112	357.4	300.0
H102	C10	C11	H113	237.4	60.0
O3	C10	H102	H101	239.7	120.1
H102	C10	O3	C9	337.6	300.0
H111	C11	C10	O3	357.4	300.0
H111	C11	C10	H101	237.1	60.0
H111	C11	C10	H102	117.4	179.9
C10	C11	H111	H112	240.0	120.0
C10	C11	H111	H113	120.0	240.1
H112	C11	H111	H113	240.0	120.0
H112	C11	C10	O3	237.3	60.0
H112	C11	C10	H101	117.1	180.1
H112	C11	C10	H102	357.4	300.0
C10	C11	H112	H111	120.0	240.0
C10	C11	H112	H113	240.0	120.0
H111	C11	H112	H113	120.0	240.0
H113	C11	C10	O3	117.4	180.0
H113	C11	C10	H101	357.1	300.0
H113	C11	C10	H102	237.4	60.0
C10	C11	H113	H111	240.0	119.9
C10	C11	H113	H112	120.0	240.0
H111	C11	H113	H112	240.0	120.1
O1	C3	C2	C4	59.3	106.8
O1	C3	C2	H3	217.3	253.2
C2	C3	O1	C2	-0.0	-0.0
C4	C3	C2	H3	157.9	146.4
C2	C3	C4	O4	294.8	112.4
C2	C3	C4	N1	115.0	292.4
O1	C2	C3	C9	121.8	106.9
O1	C2	C3	H2	239.7	253.1
C9	C2	C3	H2	117.9	146.2
C3	C2	C9	O2	241.3	113.6
C3	C2	C9	O3	61.0	293.7
C2	C3	O1	C4	231.7	253.1
C2	C3	O1	H3	86.2	106.8
O1	C3	C2	O1	-0.0	-0.0
O1	C3	C2	C9	238.2	253.1
O1	C3	C2	H2	120.3	106.9
C4	C3	O1	H3	214.4	213.7
O1	C3	C4	O4	265.6	46.4
O1	C3	C4	N1	85.8	226.4
C3	O1	C2	C9	122.8	106.9
C3	O1	C2	H2	240.7	253.2
C2	C3	C4	O1	29.1	66.0
C2	C3	C4	H3	195.3	212.9
C4	C3	C2	O1	300.7	253.2
C4	C3	C2	C9	178.8	146.3
C4	C3	C2	H2	61.0	0.1
O1	C3	C4	H3	166.1	146.9
C4	C3	O1	C2	128.3	106.9
O4	C4	C3	N1	179.8	180.0
C3	C4	N1	C5	219.6	180.0
C3	C4	N1	HN1	39.7	0.1
C2	C3	H3	O1	303.5	294.0
C2	C3	H3	C4	159.2	147.1
H3	C3	C2	O1	142.7	106.8
H3	C3	C2	C9	20.9	359.9
H3	C3	C2	H2	263.0	213.7
O1	C3	H3	C4	215.7	213.0
H3	C3	O1	C2	273.8	253.2
H3	C3	C4	O4	99.5	259.5
H3	C3	C4	N1	279.7	79.4
O1	C2	C3	O1	360.0	360.0
O1	C2	C3	C4	300.7	253.2
O1	C2	C3	H3	142.7	106.8
C3	C2	O1	C9	237.2	253.1
C3	C2	O1	H2	119.3	106.8
C2	O1	C3	C4	128.3	106.9
C2	O1	C3	H3	273.8	253.2
C9	C2	O1	H2	242.1	213.7
O1	C2	C9	O2	120.7	47.5
O1	C2	C9	O3	300.4	227.5
C10	O3	C9	C2	181.9	180.0
C9	C2	C3	O1	238.2	253.1
C9	C2	C3	C4	178.8	146.3
C9	C2	C3	H3	20.9	359.9
C3	C2	C9	O1	120.6	66.1
C3	C2	C9	H2	240.8	213.1
O1	C2	C9	H2	120.2	147.0
O2	C9	C2	O3	180.3	180.0
H2	C2	C3	O1	120.3	106.9
H2	C2	C3	C4	61.0	0.1
H2	C2	C3	H3	263.0	213.7
C3	C2	H2	O1	241.2	293.9
C3	C2	H2	C9	121.1	146.9
O1	C2	H2	C9	239.9	213.0
H2	C2	C9	O2	0.5	260.5
H2	C2	C9	O3	180.2	80.6
O4	C4	C3	H3	99.5	259.5
C3	C4	O4	N1	180.2	180.0
O4	C4	N1	C5	39.8	360.0
O4	C4	N1	HN1	219.9	180.0
N1	C4	C3	H3	279.7	79.4
C3	C4	N1	O4	179.8	180.0
C5	N1	C4	HN1	180.0	179.9
C4	N1	C5	C6	273.2	205.0
C4	N1	C5	C12	149.2	85.0
C4	N1	C5	H5	30.3	325.0
C4	N1	C5	HN1	180.0	180.1
C6	C5	N1	C12	123.9	120.0
C6	C5	N1	H5	242.9	240.0
N1	C5	C6	O5	359.4	0.1
N1	C5	C6	N2	179.2	180.0
C12	C5	N1	H5	119.0	120.0
N1	C5	C12	O8	48.2	65.0
N1	C5	C12	C13	289.4	305.0
N1	C5	C12	H12	170.0	185.0
C4	N1	HN1	C5	180.0	179.9
HN1	N1	C5	C6	93.2	24.9
HN1	N1	C5	C12	329.2	264.9
HN1	N1	C5	H5	210.3	145.0
C6	C5	N1	HN1	93.2	24.9
N1	C5	C6	C12	238.4	240.0
N1	C5	C6	H5	119.7	120.0
C12	C5	C6	H5	241.3	240.0
C6	C5	C12	O8	285.1	305.0
C6	C5	C12	C13	166.3	185.0
C6	C5	C12	H12	46.9	65.0
O5	C6	C5	N2	180.2	180.1
C5	C6	N2	C7	191.4	180.0
C5	C6	N2	HN2	11.4	0.1
C12	C5	N1	HN1	329.2	264.9
N1	C5	C12	C6	123.1	120.0
N1	C5	C12	H5	240.2	240.0
C6	C5	C12	H5	117.0	120.0
C12	C5	C6	O5	121.0	120.1
C12	C5	C6	N2	300.8	299.9
O8	C12	C5	C13	118.8	120.0
O8	C12	C5	H12	238.2	240.0
C5	C12	O8	HO8	199.7	300.0
C13	C12	C5	H12	119.4	120.0
C5	C12	C13	H131	187.4	60.0
C5	C12	C13	H132	67.4	180.0
C5	C12	C13	H133	307.3	300.0
H5	C5	N1	HN1	210.3	145.0
N1	C5	H5	C6	239.8	240.0
N1	C5	H5	C12	118.7	120.0
C6	C5	H5	C12	238.9	240.0
H5	C5	C6	O5	239.8	240.1
H5	C5	C6	N2	59.5	60.0
H5	C5	C12	O8	168.0	185.0
H5	C5	C12	C13	49.2	65.0
H5	C5	C12	H12	289.8	305.0
O5	C6	C5	C12	121.0	120.1
O5	C6	C5	H5	239.8	240.1
C5	C6	O5	N2	179.8	179.9
O5	C6	N2	C7	11.1	359.9
O5	C6	N2	HN2	191.2	180.0
N2	C6	C5	C12	300.8	299.9
N2	C6	C5	H5	59.5	60.0
C5	C6	N2	O5	180.2	180.1
C7	N2	C6	HN2	180.0	179.9
C6	N2	C7	C8	256.8	275.0
C6	N2	C7	C14	133.6	155.0
C6	N2	C7	H7	16.2	35.1
O8	C12	C5	H5	168.0	185.0
C5	C12	O8	C13	235.2	240.0
C5	C12	O8	H12	115.4	120.0
C13	C12	O8	H12	240.2	240.0
O8	C12	C13	H131	64.7	300.0
O8	C12	C13	H132	304.7	60.1
O8	C12	C13	H133	184.7	180.0
C13	C12	C5	H5	49.2	65.0
C5	C12	C13	O8	122.6	120.0
C5	C12	C13	H12	244.7	240.0
O8	C12	C13	H12	122.1	120.0
C13	C12	O8	HO8	324.5	60.0
H131	C13	C12	H132	120.0	239.9
H131	C13	C12	H133	240.0	120.0
H132	C13	C12	H133	120.0	240.1
H12	C12	C5	H5	289.8	305.0
C5	C12	H12	O8	239.5	240.0
C5	C12	H12	C13	122.8	120.0
O8	C12	H12	C13	243.3	240.0
H12	C12	O8	HO8	84.3	180.0
H12	C12	C13	H131	302.7	180.0
H12	C12	C13	H132	182.6	300.1
H12	C12	C13	H133	62.6	60.0
HO8	O8	C12	C13	324.5	60.0
HO8	O8	C12	H12	84.3	180.0
H131	C13	C12	H12	302.7	180.0
C12	C13	H131	H132	240.0	120.0
C12	C13	H131	H133	120.0	240.0
H132	C13	H131	H133	240.0	120.0
H132	C13	C12	H12	182.6	300.1
C12	C13	H132	H131	120.0	240.0
C12	C13	H132	H133	240.0	119.9
H131	C13	H132	H133	120.0	240.0
H133	C13	C12	H12	62.6	60.0
C12	C13	H133	H131	240.0	120.0
C12	C13	H133	H132	120.0	240.0
H131	C13	H133	H132	240.0	120.1
C6	N2	C7	HN2	180.0	180.1
C8	C7	N2	C14	123.3	120.0
C8	C7	N2	H7	240.6	240.0
N2	C7	C8	O7	341.2	180.0
N2	C7	C8	O6	160.3	0.0
C14	C7	N2	H7	117.3	120.0
N2	C7	C14	C16	309.7	185.0
N2	C7	C14	C15	188.7	65.0
N2	C7	C14	H14	68.6	305.0
C6	N2	HN2	C7	180.0	179.9
HN2	N2	C7	C8	76.8	94.9
HN2	N2	C7	C14	313.5	335.0
HN2	N2	C7	H7	196.2	215.0
C8	C7	N2	HN2	76.8	94.9
N2	C7	C8	C14	240.6	240.0
N2	C7	C8	H7	123.3	120.1
C14	C7	C8	H7	242.7	240.1
C8	C7	C14	C16	192.5	65.0
C8	C7	C14	C15	71.5	305.0
C8	C7	C14	H14	311.3	185.0
O7	C8	C7	O6	180.9	180.0
C7	C8	O7	HO7	179.0	180.0
C14	C7	N2	HN2	313.5	335.0
N2	C7	C14	C8	117.3	120.0
N2	C7	C14	H7	236.7	240.0
C8	C7	C14	H7	119.4	119.9
C14	C7	C8	O7	100.5	300.0
C14	C7	C8	O6	279.6	120.1
C16	C14	C7	C15	121.0	120.0
C16	C14	C7	H14	241.1	240.0
C7	C14	C16	C17	100.4	175.0
C7	C14	C16	H161	343.3	295.0
C7	C14	C16	H162	220.4	55.0
C15	C14	C7	H14	120.1	119.9
C7	C14	C15	H151	160.4	180.0
C7	C14	C15	H152	40.4	300.1
C7	C14	C15	H153	280.4	60.0
H7	C7	N2	HN2	196.2	215.0
N2	C7	H7	C8	242.7	240.0
N2	C7	H7	C14	119.4	120.0
C8	C7	H7	C14	236.7	240.1
H7	C7	C8	O7	217.9	60.0
H7	C7	C8	O6	37.0	240.0
H7	C7	C14	C16	73.0	305.0
H7	C7	C14	C15	312.0	185.0
H7	C7	C14	H14	191.9	65.1
O7	C8	C7	C14	100.5	300.0
O7	C8	C7	H7	217.9	60.0
C7	C8	O7	O6	179.0	180.0
O6	C8	C7	C14	279.6	120.1
O6	C8	C7	H7	37.0	240.0
C7	C8	O6	O7	180.9	180.0
O6	C8	O7	HO7	360.0	360.0
HO7	O7	C8	O6	360.0	360.0
C16	C14	C7	H7	73.0	305.0
C7	C14	C16	C15	236.2	240.0
C7	C14	C16	H14	115.8	120.0
C15	C14	C16	H14	239.6	240.0
C16	C14	C15	H151	35.6	60.0
C16	C14	C15	H152	275.6	180.0
C16	C14	C15	H153	155.5	300.0
C17	C16	C14	H161	117.2	239.9
C17	C16	C14	H162	240.0	120.0
C14	C16	C17	H171	9.3	300.0
C14	C16	C17	H172	249.3	60.0
C14	C16	C17	H173	129.3	180.0
H161	C16	C14	H162	122.8	240.0
C15	C14	C7	H7	312.0	185.0
C7	C14	C15	C16	124.8	120.0
C7	C14	C15	H14	244.1	240.1
C16	C14	C15	H14	119.3	120.0
C15	C14	C16	C17	224.3	295.0
C15	C14	C16	H161	107.1	55.0
C15	C14	C16	H162	344.3	175.0
H151	C15	C14	H152	120.0	240.0
H151	C15	C14	H153	240.0	120.0
H152	C15	C14	H153	120.0	240.1
H14	C14	C7	H7	191.9	65.1
C7	C14	H14	C16	238.3	240.0
C7	C14	H14	C15	120.6	119.9
C16	C14	H14	C15	242.3	240.0
H14	C14	C16	C17	344.7	55.0
H14	C14	C16	H161	227.5	175.0
H14	C14	C16	H162	104.7	295.0
H14	C14	C15	H151	276.3	300.0
H14	C14	C15	H152	156.3	60.0
H14	C14	C15	H153	36.2	179.9
C17	C16	C14	C15	224.3	295.0
C17	C16	C14	H14	344.7	55.0
C14	C16	C17	H161	242.8	120.0
C14	C16	C17	H162	120.0	240.0
H161	C16	C17	H162	237.2	120.0
H171	C17	C16	H172	120.0	239.9
H171	C17	C16	H173	240.0	120.0
H172	C17	C16	H173	120.0	240.0
H161	C16	C14	C15	107.1	55.0
H161	C16	C14	H14	227.5	175.0
C14	C16	H161	C17	123.5	240.0
C14	C16	H161	H162	241.8	119.9
C17	C16	H161	H162	118.3	240.0
H161	C16	C17	H171	126.5	180.0
H161	C16	C17	H172	6.5	300.0
H161	C16	C17	H173	246.5	60.0
H162	C16	C14	C15	344.3	175.0
H162	C16	C14	H14	104.7	295.0
C14	C16	H162	C17	234.9	120.0
C14	C16	H162	H161	117.4	240.0
C17	C16	H162	H161	242.6	120.1
H162	C16	C17	H171	249.3	59.9
H162	C16	C17	H172	129.3	180.0
H162	C16	C17	H173	9.3	300.0
H151	C15	C14	H14	276.3	300.0
C14	C15	H151	H152	240.0	120.0
C14	C15	H151	H153	120.0	240.0
H152	C15	H151	H153	240.0	120.0
H152	C15	C14	H14	156.3	60.0
C14	C15	H152	H151	120.0	240.0
C14	C15	H152	H153	239.9	120.0
H151	C15	H152	H153	120.0	240.0
H153	C15	C14	H14	36.2	179.9
C14	C15	H153	H151	240.0	120.0
C14	C15	H153	H152	120.0	240.0
H151	C15	H153	H152	240.0	120.1
H171	C17	C16	H161	126.5	180.0
H171	C17	C16	H162	249.3	59.9
C16	C17	H171	H172	240.0	120.0
C16	C17	H171	H173	120.0	240.0
H172	C17	H171	H173	240.0	120.0
H172	C17	C16	H161	6.5	300.0
H172	C17	C16	H162	129.3	180.0
C16	C17	H172	H171	120.0	240.0
C16	C17	H172	H173	240.0	120.0
H171	C17	H172	H173	120.0	240.0
H173	C17	C16	H161	246.5	60.0
H173	C17	C16	H162	9.3	300.0
C16	C17	H173	H171	240.0	120.0
C16	C17	H173	H172	120.0	240.0
H171	C17	H173	H172	240.0	120.0
C10	O3	C9	O2	1.5	0.0
O2	C9	C2	H2	0.5	260.5
C2	C9	O2	O3	179.6	180.0
C9	O3	C10	H101	217.9	60.0
C9	O3	C10	H102	337.6	300.0
O3	C9	C2	H2	180.2	80.6
C2	C9	O3	O2	180.3	180.0